Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006094

Physical Location & Seq

Genomic Coordinates Reverse (-)

39612213 .. 39617216

Gene Structure 5004 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG370400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGCGCGGCTTAACGGTGTGGTTCTGGGCGCTGACGTCAGCAGCAGCTATATTGGGGGCGGCAGTGTCGCCATCGTCATCGTCGTCGTCGTGGGTGGCGGACGGGACGGTGCTGGAGCTGGACGATTCCAACTTCGAATCGGCGATTTCAGCGCTGGACTTGGTCTTGGTGGACTTCCACGCCCCCTGGTGCGGCCACTGCAAGCGTCTCTCTCCTCAGTTGGACGCGGCTGCGCCGAAGCTTGCTTCATTGAAGAACCCAATTGTGATCGCAAAAGTTAATGCTGACAAGTATACATCTTTAGCTCGCAAATATGAAGTCGATGGATATCCTACGCTGAAGCTCTTTATACATGGTGTCCCCCAAGAGTATAACGGGCCGAGGAAAGCCGATTTGCTTGTTAGTTATCTCAAGAAATTTGCAGCTCCCGATGTTACCCTACTTGATTCAGACTCTGCTGTTGCTGATTTTGTTGGAGCAGCAGGCACATTCTTCCCTATTTATGTTGGTTTTGGCTTAGATGAGTCCCTGATATCTAAGTTGGCATTGAAGTACAAAAAGAAGGCCTGGTTTTCGGTTGCAAAGGATTTCTCTGAGGATCTAATGATGTTGTATGATTTTGACAAGGTTCCTGCTTTGGTATCCCTTCATCCAAGTTACGATGAGCGCCACGTCTTTTACGGCCCCTTTGAAGAGGAATTTTTGGAAGATTTCATAAAACAAAGTTTGTTACCTTTGGCCATACCCATCAACTATGACACATTAAAATCATTGGACGATGATGAAAGAAAAATTGTGTTGACAATTGTGGAGGATGAGGATGAAGAGAAGTCAAAGAACTTGATCAAGATTTTGAAATCTGCTGCATCCGCTAATCGAGACCTTGTATTTGGTTATGTCGGGATCAAACAATGGGAAGATTTTGCTGAAACATTCGGAGCAAACAAGAAGACAAAATTACCAAAAATGGTTGTTTGGGATCGAATGGAGGAGTACTTAACAGTAAGTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005911 GO:0006457 GO:0006950 GO:0008150 GO:0009505 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0030054 GO:0030312 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0071944 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

337

Amino Acids

37.55

Weight (kDa)

4.99

Isoelectric Point (pI)

30.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	37 - 139	1.5e-26	Thioredoxin
Thioredoxin_6	PF13848	196 - 330	8.9e-10	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35620
fragaria_vesca	FvH4_5g30970 FvH4_5g30970
malus_domestica	MD08G1220700.v1.1 MD09G1249700.v1.1 MD15G1411400.v1.1
prunus_persica	Prupe.1G557400_v2.0.a1
pyrus_communis	pycom08g19150 pycom15g36620
rosa_chinensis	RchiOBHm_Chr7g0226321 RchiOBHm_Chr7g0226361
rosa_laevigata	RLG00000001746 RLG00000001751
rosa_multiflora	Rmu_sc0001044.1_g000026 Rmu_sc0004322.1_g000024 Rmu_sc0004426.1_g000003 Rmu_sc0004426.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233030 Rroxscaffold_5G00366610
rosa_rugosa	Rorug07G0236600
rosa_samantha	Rh7AG383600 Rh7BG370400 Rh7CG403200 Rh7DG382000
rosa_wichuraiana	Rw7G032130 Rw7G032150 Rw7G032210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	293
AccII	CGCG	2 cut(s)	6, 227
AciI	CCGC	6 cut(s)	6, 59, 98, 192, 227, 870
AclWI	GGATC	3 cut(s)	606, 911, 987
AcoI	YGGCCR	2 cut(s)	193, 738
AcsI	RAATTY	2 cut(s)	416, 698
AcuI	CTGAAG	1 cut(s)	359
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	2 cut(s)	554, 995
AfeI	AGCGCT	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	4 cut(s)	253, 550, 692, 856
AjiI	CACGTC	1 cut(s)	673
AjnI	CCWGG	2 cut(s)	185, 566
AluBI	AGCT	6 cut(s)	47, 118, 241, 305, 343, 425
AluI	AGCT	6 cut(s)	47, 118, 241, 305, 343, 425
Alw26I	GTCTC	2 cut(s)	212, 873
AlwI	GGATC	3 cut(s)	606, 911, 987
AlwNI	CAGNNNCTG	1 cut(s)	455
Aor51HI	AGCGCT	1 cut(s)	153
AoxI	GGCC	5 cut(s)	193, 377, 564, 682, 738
ApeKI	GCWGC	6 cut(s)	41, 44, 230, 422, 479, 863
ApoI	RAATTY	2 cut(s)	416, 698
ArsI	GACNNNNNNTTYG	4 cut(s)	303, 335, 872, 904
AspLEI	GCGC	5 cut(s)	6, 31, 154, 235, 669
AspS9I	GGNCC	2 cut(s)	377, 683
AsuII	TTCGAA	1 cut(s)	135
BalI	TGGCCA	1 cut(s)	740
BbsI	GAAGAC	1 cut(s)	956
BbvI	GCAGC	6 cut(s)	53, 56, 217, 434, 491, 850
BccI	CCATC	3 cut(s)	79, 317, 755
BceAI	ACGGC	1 cut(s)	697
BciT130I	CCWGG	2 cut(s)	187, 568
BciVI	GTATCC	1 cut(s)	652
BclI	TGATCA	1 cut(s)	843
BcoDI	GTCTC	2 cut(s)	212, 873
BfoI	RGCGCY	3 cut(s)	32, 155, 670
BfuI	GTATCC	1 cut(s)	652
BmcAI	AGTACT	1 cut(s)	995
Bme1390I	CCNGG	2 cut(s)	187, 568
BmgBI	CACGTC	1 cut(s)	673
BmgT120I	GGNCC	2 cut(s)	377, 683
BmiI	GGNNCC	2 cut(s)	630, 685
BmrFI	CCNGG	2 cut(s)	187, 568
BmsI	GCATC	1 cut(s)	875
BpiI	GAAGAC	1 cut(s)	956
BpmI	CTGGAG	1 cut(s)	134
Bpu14I	TTCGAA	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	395
BsaBI	GATNNNNATC	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	35
BsaI	GGTCTC	1 cut(s)	873
BsaJI	CCNNGG	2 cut(s)	185, 380
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	2 cut(s)	187, 568
BseDI	CCNNGG	2 cut(s)	185, 380
BseGI	GGATG	4 cut(s)	649, 820, 826, 866
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMII	CTCAG	2 cut(s)	230, 585
BseRI	GAGGAG	2 cut(s)	204, 1004
BseXI	GCAGC	6 cut(s)	53, 56, 217, 434, 491, 850
Bsh1236I	CGCG	2 cut(s)	6, 227
BshFI	GGCC	5 cut(s)	195, 379, 566, 684, 740
BslFI	GGGAC	3 cut(s)	118, 344, 511
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	2 cut(s)	212, 873
BsmBI	CGTCTC	1 cut(s)	212
BsmFI	GGGAC	3 cut(s)	118, 344, 511
BsnI	GGCC	5 cut(s)	195, 379, 566, 684, 740
Bso31I	GGTCTC	1 cut(s)	873
Bsp119I	TTCGAA	1 cut(s)	135
Bsp143I	GATC	5 cut(s)	267, 598, 843, 903, 979
BspACI	CCGC	6 cut(s)	6, 59, 98, 192, 227, 870
BspANI	GGCC	5 cut(s)	195, 379, 566, 684, 740
BspCNI	CTCAG	2 cut(s)	229, 586
BspFNI	CGCG	2 cut(s)	6, 227
BspLI	GGNNCC	2 cut(s)	630, 685
BspPI	GGATC	3 cut(s)	606, 911, 987
BspT104I	TTCGAA	1 cut(s)	135
BspTNI	GGTCTC	1 cut(s)	873
BssECI	CCNNGG	2 cut(s)	185, 380
BssMI	GATC	5 cut(s)	267, 598, 843, 903, 979
BssNAI	GTATAC	1 cut(s)	294
BssNI	GRCGYC	1 cut(s)	35
Bst1107I	GTATAC	1 cut(s)	294
Bst2UI	CCWGG	2 cut(s)	187, 568
Bst4CI	ACNGT	3 cut(s)	16, 109, 1003
Bst6I	CTCTTC	2 cut(s)	687, 819
BstACI	GRCGYC	1 cut(s)	35
BstBI	TTCGAA	1 cut(s)	135
BstC8I	GCNNGC	4 cut(s)	203, 243, 307, 484
BstDEI	CTNAG	4 cut(s)	216, 517, 537, 594
BstF5I	GGATG	4 cut(s)	649, 820, 826, 866
BstFNI	CGCG	2 cut(s)	6, 227
BstH2I	RGCGCY	3 cut(s)	32, 155, 670
BstHHI	GCGC	5 cut(s)	6, 31, 154, 235, 669
BstKTI	GATC	5 cut(s)	270, 601, 846, 906, 982
BstMAI	GTCTC	2 cut(s)	212, 873
BstMBI	GATC	5 cut(s)	267, 598, 843, 903, 979
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 198, 869
BstNI	CCWGG	2 cut(s)	187, 568
BstSCI	CCNGG	2 cut(s)	185, 566
BstUI	CGCG	2 cut(s)	6, 227
BstV1I	GCAGC	6 cut(s)	53, 56, 217, 434, 491, 850
BstV2I	GAAGAC	1 cut(s)	956
BstX2I	RGATCY	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	598
BstZ17I	GTATAC	1 cut(s)	294
BsuI	GTATCC	1 cut(s)	652
BsuRI	GGCC	5 cut(s)	195, 379, 566, 684, 740
BtrI	CACGTC	1 cut(s)	673
BtsCI	GGATG	4 cut(s)	649, 820, 826, 866
BtsI	GCAGTG	2 cut(s)	69, 196
BtsIMutI	CAGTG	2 cut(s)	69, 196
Cac8I	GCNNGC	4 cut(s)	203, 243, 307, 484
CaiI	CAGNNNCTG	1 cut(s)	455
CfoI	GCGC	5 cut(s)	6, 31, 154, 235, 669
Cfr13I	GGNCC	2 cut(s)	377, 683
CseI	GACGC	2 cut(s)	194, 233
Csp6I	GTAC	2 cut(s)	553, 994
CviAII	CATG	1 cut(s)	353
CviQI	GTAC	2 cut(s)	553, 994
DdeI	CTNAG	4 cut(s)	216, 517, 537, 594
DpnI	GATC	5 cut(s)	269, 600, 845, 905, 981
DpnII	GATC	5 cut(s)	267, 598, 843, 903, 979
EaeI	YGGCCR	2 cut(s)	193, 738
Eam1104I	CTCTTC	2 cut(s)	687, 819
EarI	CTCTTC	2 cut(s)	687, 819
EciI	GGCGGA	1 cut(s)	113
Eco147I	AGGCCT	1 cut(s)	566
Eco31I	GGTCTC	1 cut(s)	873
Eco32I	GATATC	2 cut(s)	329, 534
Eco47III	AGCGCT	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	359
EcoRII	CCWGG	2 cut(s)	185, 566
EcoRV	GATATC	2 cut(s)	329, 534
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	1 cut(s)	356
FaqI	GGGAC	3 cut(s)	118, 344, 511
FatI	CATG	1 cut(s)	352
FbaI	TGATCA	1 cut(s)	843
FblI	GTMKAC	1 cut(s)	293
FokI	GGATG	4 cut(s)	636, 827, 833, 853
GlaI	GCGC	5 cut(s)	5, 30, 153, 234, 668
GsuI	CTGGAG	1 cut(s)	134
HaeII	RGCGCY	3 cut(s)	32, 155, 670
HaeIII	GGCC	5 cut(s)	195, 379, 566, 684, 740
HgaI	GACGC	2 cut(s)	194, 233
HhaI	GCGC	5 cut(s)	6, 31, 154, 235, 669
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	1 cut(s)	356
Hin6I	GCGC	5 cut(s)	4, 29, 152, 233, 667
HinP1I	GCGC	5 cut(s)	4, 29, 152, 233, 667
HincII	GTYRAC	1 cut(s)	801
HindII	GTYRAC	1 cut(s)	801
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	5 cut(s)	125, 137, 446, 452, 524
Hpy166II	GTNNAC	3 cut(s)	172, 294, 801
Hpy188I	TCNGA	3 cut(s)	451, 595, 938
Hpy188III	TCNNGA	5 cut(s)	412, 428, 847, 878, 901
Hpy8I	GTNNAC	3 cut(s)	172, 294, 801
Hpy99I	CGWCG	3 cut(s)	85, 88, 91
HpyAV	CCTTC	2 cut(s)	556, 656
HpyCH4III	ACNGT	3 cut(s)	16, 109, 1003
HpyCH4IV	ACGT	2 cut(s)	35, 672
HpyCH4V	TGCA	4 cut(s)	201, 422, 581, 866
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 198, 869
HpyF3I	CTNAG	4 cut(s)	216, 517, 537, 594
HpySE526I	ACGT	2 cut(s)	35, 672
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	356
HspAI	GCGC	5 cut(s)	4, 29, 152, 233, 667
Ksp22I	TGATCA	1 cut(s)	843
Kzo9I	GATC	5 cut(s)	267, 598, 843, 903, 979
LmnI	GCTCC	4 cut(s)	115, 430, 476, 938
Lsp1109I	GCAGC	6 cut(s)	53, 56, 217, 434, 491, 850
LweI	GCATC	1 cut(s)	875
MaeII	ACGT	2 cut(s)	35, 672
MaeIII	GTNAC	3 cut(s)	433, 656, 729
MalI	GATC	5 cut(s)	269, 600, 845, 905, 981
MboI	GATC	5 cut(s)	267, 598, 843, 903, 979
MboII	GAAGA	7 cut(s)	265, 484, 704, 719, 836, 929, 961
MfeI	CAATTG	2 cut(s)	261, 804
MflI	RGATCY	1 cut(s)	598
MlsI	TGGCCA	1 cut(s)	740
MluCI	AATT	6 cut(s)	261, 416, 698, 792, 804, 956
MluNI	TGGCCA	1 cut(s)	740
MlyI	GAGTC	2 cut(s)	446, 533
MmeI	TCCRAC	3 cut(s)	153, 201, 454
MnlI	CCTC	7 cut(s)	225, 375, 589, 688, 805, 811, 982
Mox20I	TGGCCA	1 cut(s)	740
MscI	TGGCCA	1 cut(s)	740
MseI	TTAA	5 cut(s)	11, 279, 764, 998, 1012
Msp20I	TGGCCA	1 cut(s)	740
MspR9I	CCNGG	2 cut(s)	187, 568
MunI	CAATTG	2 cut(s)	261, 804
MvaI	CCWGG	2 cut(s)	187, 568
MvnI	CGCG	2 cut(s)	6, 227
MwoI	GCNNNNNNNGC	3 cut(s)	149, 198, 869
NdeII	GATC	5 cut(s)	267, 598, 843, 903, 979
NlaIII	CATG	1 cut(s)	356
NlaIV	GGNNCC	2 cut(s)	630, 685
NmeAIII	GCCGAG	1 cut(s)	405
NspV	TTCGAA	1 cut(s)	135
PceI	AGGCCT	1 cut(s)	566
PcsI	WCGNNNNNNNCGW	2 cut(s)	80, 86
PfeI	GAWTC	3 cut(s)	125, 137, 446
PflFI	GACNNNGTC	1 cut(s)	161
PleI	GAGTC	2 cut(s)	446, 532
PpsI	GAGTC	2 cut(s)	446, 532
Psp6I	CCWGG	2 cut(s)	185, 566
PspGI	CCWGG	2 cut(s)	185, 566
PspN4I	GGNNCC	2 cut(s)	630, 685
PspPI	GGNCC	2 cut(s)	377, 683
PstNI	CAGNNNCTG	1 cut(s)	455
PsuI	RGATCY	1 cut(s)	598
PsyI	GACNNNGTC	1 cut(s)	161
RsaI	GTAC	2 cut(s)	554, 995
RsaNI	GTAC	2 cut(s)	553, 994
SaqAI	TTAA	5 cut(s)	11, 279, 764, 998, 1012
Sau3AI	GATC	5 cut(s)	267, 598, 843, 903, 979
Sau96I	GGNCC	2 cut(s)	377, 683
ScaI	AGTACT	1 cut(s)	995
SchI	GAGTC	2 cut(s)	446, 533
ScrFI	CCNGG	2 cut(s)	187, 568
SfaNI	GCATC	1 cut(s)	875
SfuI	TTCGAA	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	6 cut(s)	261, 416, 698, 792, 804, 956
SseBI	AGGCCT	1 cut(s)	566
SsiI	CCGC	6 cut(s)	6, 59, 98, 192, 227, 870
StuI	AGGCCT	1 cut(s)	566
StyD4I	CCNGG	2 cut(s)	185, 566
TaaI	ACNGT	3 cut(s)	16, 109, 1003
TaiI	ACGT	2 cut(s)	38, 675
TaqI	TCGA	4 cut(s)	135, 321, 877, 982
TasI	AATT	6 cut(s)	261, 416, 698, 792, 804, 956
TatI	WGTACW	2 cut(s)	552, 993
TauI	GCSGC	4 cut(s)	9, 62, 195, 230
TfiI	GAWTC	3 cut(s)	125, 137, 446
Tru1I	TTAA	5 cut(s)	11, 279, 764, 998, 1012
Tru9I	TTAA	5 cut(s)	11, 279, 764, 998, 1012
TscAI	CASTG	2 cut(s)	69, 203
TseI	GCWGC	6 cut(s)	41, 44, 230, 422, 479, 863
TspDTI	ATGAA	6 cut(s)	237, 330, 638, 703, 798, 837
TspRI	CASTG	2 cut(s)	69, 203
Tth111I	GACNNNGTC	1 cut(s)	161
XapI	RAATTY	2 cut(s)	416, 698
XmiI	GTMKAC	1 cut(s)	293
ZraI	GACGTC	1 cut(s)	36
ZrmI	AGTACT	1 cut(s)	995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.