Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004426.1

Orthogroup ID

OG0006094

Physical Location & Seq

Genomic Coordinates Forward (+)

13024 .. 14892

Gene Structure 1869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004426.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atgcgcggcatgggtggcttaacgatgtggttctgggcgctgacgtcagcagcagctatattggaggcgtcagtgtcgtcgtcgtcttgggtggctgacgggacggtgctggagctggacgattccaacttcgaatcggcgatttcagcgctcgacttggtcttggtggacttccacgccccatggtgcccccacagcaagagtctctctcctcagttggacgcggctgcgccgatgcttgcttcattgaagaaaccaatagtgatagcaaaagttgatgctgacaagtctacatctctagcttgcaaatacggagtcgatggatatcctacgctgaagctctttatacatggtgtcccccaagagtatatggggccaaggaaagccgatttgcttgttcgttatctcaagaaatttgcagctcccgatgttaccctacttgattcagactctgctattgctgattttgttggagcggcaggcacattcttccccatatatgttggttttggcttagatgagtccgtgatatcgaagttggcattgaagtacaaaaggaaggcctggttttcggttgcaaaggatttctctgaggatgtaatgctattgtatgattttgacaaggttcctgctctggtatcccttcatccaagttgcgatgagcgctacgtcttttacggcccctttgaagaggaattcttggaagatttcattaaacaaagtttgttacctttggccatgcccatcaaccatgacacattaaaatcattggacgatgatgaaaggaaaattatgttgacaattgtggaggatgaggatgaagaaagtcaaagaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005911 GO:0006457 GO:0006950 GO:0008150 GO:0009505 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0030054 GO:0030312 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0071944 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

279

Amino Acids

30.91

Weight (kDa)

4.62

Isoelectric Point (pI)

33.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35620
fragaria_vesca	FvH4_5g30970 FvH4_5g30970
malus_domestica	MD08G1220700.v1.1 MD09G1249700.v1.1 MD15G1411400.v1.1
prunus_persica	Prupe.1G557400_v2.0.a1
pyrus_communis	pycom08g19150 pycom15g36620
rosa_chinensis	RchiOBHm_Chr7g0226321 RchiOBHm_Chr7g0226361
rosa_laevigata	RLG00000001746 RLG00000001751
rosa_multiflora	Rmu_sc0001044.1_g000026 Rmu_sc0004322.1_g000024 Rmu_sc0004426.1_g000003 Rmu_sc0004426.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233030 Rroxscaffold_5G00366610
rosa_rugosa	Rorug07G0236600
rosa_samantha	Rh7AG383600 Rh7BG370400 Rh7CG403200 Rh7DG382000
rosa_wichuraiana	Rw7G032130 Rw7G032150 Rw7G032210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	186
AccBSI	CCGCTC	1 cut(s)	476
AccI	GTMKAC	1 cut(s)	290
AccII	CGCG	2 cut(s)	6, 224
AciI	CCGC	3 cut(s)	6, 224, 476
AcoI	YGGCCR	1 cut(s)	735
AcsI	RAATTY	2 cut(s)	413, 695
AcuI	CTGAAG	1 cut(s)	356
AcyI	GRCGYC	2 cut(s)	44, 68
AfaI	GTAC	1 cut(s)	551
AfeI	AGCGCT	2 cut(s)	150, 665
AgsI	TTSAA	3 cut(s)	250, 547, 689
AjnI	CCWGG	1 cut(s)	563
AluBI	AGCT	5 cut(s)	56, 115, 302, 340, 422
AluI	AGCT	5 cut(s)	56, 115, 302, 340, 422
Alw26I	GTCTC	1 cut(s)	209
AlwNI	CAGNNNCTG	1 cut(s)	452
Aor51HI	AGCGCT	2 cut(s)	150, 665
AoxI	GGCC	4 cut(s)	374, 561, 679, 735
ApeKI	GCWGC	4 cut(s)	50, 53, 227, 419
ApoI	RAATTY	2 cut(s)	413, 695
ArsI	GACNNNNNNTTYG	2 cut(s)	300, 332
AspLEI	GCGC	5 cut(s)	6, 40, 151, 232, 666
AspS9I	GGNCC	2 cut(s)	374, 680
AsuII	TTCGAA	1 cut(s)	132
BaeGI	GKGCMC	1 cut(s)	191
BalI	TGGCCA	1 cut(s)	737
BanI	GGYRCC	1 cut(s)	186
BbvI	GCAGC	4 cut(s)	62, 65, 214, 431
BccI	CCATC	2 cut(s)	314, 752
BceAI	ACGGC	1 cut(s)	694
BciT130I	CCWGG	1 cut(s)	565
BciVI	GTATCC	1 cut(s)	649
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	1 cut(s)	299
BfoI	RGCGCY	3 cut(s)	41, 152, 667
BfuI	GTATCC	1 cut(s)	649
BisI	GCNGC	7 cut(s)	7, 51, 54, 225, 228, 420, 477
BlsI	GCNGC	7 cut(s)	8, 52, 55, 226, 229, 421, 478
Bme1390I	CCNGG	1 cut(s)	565
BmgT120I	GGNCC	2 cut(s)	374, 680
BmiI	GGNNCC	4 cut(s)	188, 375, 627, 682
BmrFI	CCNGG	1 cut(s)	565
BmsI	GCATC	2 cut(s)	225, 268
BplI	GAGNNNNNCTC	2 cut(s)	193, 225
BpmI	CTGGAG	1 cut(s)	131
Bpu14I	TTCGAA	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	392
BsaBI	GATNNNNATC	1 cut(s)	324
BsaHI	GRCGYC	2 cut(s)	44, 68
BsaJI	CCNNGG	2 cut(s)	182, 377
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	565
BseDI	CCNNGG	2 cut(s)	182, 377
BseGI	GGATG	4 cut(s)	601, 646, 817, 823
BseJI	GATNNNNATC	1 cut(s)	324
BseMII	CTCAG	2 cut(s)	227, 582
BseRI	GAGGAG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	191
BseXI	GCAGC	4 cut(s)	62, 65, 214, 431
Bsh1236I	CGCG	2 cut(s)	6, 224
BshFI	GGCC	4 cut(s)	376, 563, 681, 737
BshNI	GGYRCC	1 cut(s)	186
BslFI	GGGAC	2 cut(s)	115, 341
BsmAI	GTCTC	1 cut(s)	209
BsmFI	GGGAC	2 cut(s)	115, 341
BsnI	GGCC	4 cut(s)	376, 563, 681, 737
Bsp119I	TTCGAA	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp19I	CCATGG	1 cut(s)	182
BspACI	CCGC	3 cut(s)	6, 224, 476
BspANI	GGCC	4 cut(s)	376, 563, 681, 737
BspCNI	CTCAG	2 cut(s)	226, 583
BspFNI	CGCG	2 cut(s)	6, 224
BspLI	GGNNCC	4 cut(s)	188, 375, 627, 682
BspT104I	TTCGAA	1 cut(s)	132
BspT107I	GGYRCC	1 cut(s)	186
BsrBI	CCGCTC	1 cut(s)	476
BssECI	CCNNGG	2 cut(s)	182, 377
BssNI	GRCGYC	2 cut(s)	44, 68
BssT1I	CCWWGG	2 cut(s)	182, 377
Bst2UI	CCWGG	1 cut(s)	565
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	684
BstACI	GRCGYC	2 cut(s)	44, 68
BstBI	TTCGAA	1 cut(s)	132
BstC8I	GCNNGC	3 cut(s)	240, 304, 481
BstDEI	CTNAG	3 cut(s)	213, 514, 591
BstDSI	CCRYGG	1 cut(s)	182
BstF5I	GGATG	4 cut(s)	601, 646, 817, 823
BstFNI	CGCG	2 cut(s)	6, 224
BstH2I	RGCGCY	3 cut(s)	41, 152, 667
BstHHI	GCGC	5 cut(s)	6, 40, 151, 232, 666
BstMAI	GTCTC	1 cut(s)	209
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 146, 195, 663
BstNI	CCWGG	1 cut(s)	565
BstSCI	CCNGG	1 cut(s)	563
BstSLI	GKGCMC	1 cut(s)	191
BstUI	CGCG	2 cut(s)	6, 224
BstV1I	GCAGC	4 cut(s)	62, 65, 214, 431
BsuI	GTATCC	1 cut(s)	649
BsuRI	GGCC	4 cut(s)	376, 563, 681, 737
BtgI	CCRYGG	1 cut(s)	182
BtgZI	GCGATG	1 cut(s)	672
BtsCI	GGATG	4 cut(s)	601, 646, 817, 823
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	3 cut(s)	240, 304, 481
CaiI	CAGNNNCTG	1 cut(s)	452
CfoI	GCGC	5 cut(s)	6, 40, 151, 232, 666
Cfr13I	GGNCC	2 cut(s)	374, 680
CseI	GACGC	2 cut(s)	57, 230
Csp6I	GTAC	1 cut(s)	550
CviAII	CATG	5 cut(s)	10, 183, 350, 739, 752
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	3 cut(s)	213, 514, 591
EaeI	YGGCCR	1 cut(s)	735
Eam1104I	CTCTTC	1 cut(s)	684
EarI	CTCTTC	1 cut(s)	684
Eco130I	CCWWGG	2 cut(s)	182, 377
Eco147I	AGGCCT	1 cut(s)	563
Eco32I	GATATC	2 cut(s)	326, 531
Eco47III	AGCGCT	2 cut(s)	150, 665
Eco57I	CTGAAG	1 cut(s)	356
EcoRI	GAATTC	1 cut(s)	695
EcoRII	CCWGG	1 cut(s)	563
EcoRV	GATATC	2 cut(s)	326, 531
EcoT14I	CCWWGG	2 cut(s)	182, 377
ErhI	CCWWGG	2 cut(s)	182, 377
FaeI	CATG	5 cut(s)	13, 186, 353, 742, 755
FaqI	GGGAC	2 cut(s)	115, 341
FatI	CATG	5 cut(s)	9, 182, 349, 738, 751
FblI	GTMKAC	1 cut(s)	290
Fnu4HI	GCNGC	7 cut(s)	7, 51, 54, 225, 228, 420, 477
FokI	GGATG	4 cut(s)	608, 633, 824, 830
Fsp4HI	GCNGC	7 cut(s)	7, 51, 54, 225, 228, 420, 477
FspBI	CTAG	1 cut(s)	299
GlaI	GCGC	5 cut(s)	5, 39, 150, 231, 665
GluI	GCNGC	7 cut(s)	7, 51, 54, 225, 228, 420, 477
GsuI	CTGGAG	1 cut(s)	131
HaeII	RGCGCY	3 cut(s)	41, 152, 667
HaeIII	GGCC	4 cut(s)	376, 563, 681, 737
HgaI	GACGC	2 cut(s)	57, 230
HhaI	GCGC	5 cut(s)	6, 40, 151, 232, 666
Hin1I	GRCGYC	2 cut(s)	44, 68
Hin1II	CATG	5 cut(s)	13, 186, 353, 742, 755
Hin6I	GCGC	5 cut(s)	4, 38, 149, 230, 664
HinP1I	GCGC	5 cut(s)	4, 38, 149, 230, 664
HincII	GTYRAC	1 cut(s)	798
HindII	GTYRAC	1 cut(s)	798
HinfI	GANTC	7 cut(s)	122, 134, 202, 315, 443, 449, 521
Hpy166II	GTNNAC	3 cut(s)	169, 291, 798
Hpy188I	TCNGA	2 cut(s)	448, 592
Hpy188III	TCNNGA	2 cut(s)	409, 425
Hpy8I	GTNNAC	3 cut(s)	169, 291, 798
Hpy99I	CGWCG	2 cut(s)	82, 85
HpyAV	CCTTC	2 cut(s)	553, 653
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	2 cut(s)	44, 669
HpyCH4V	TGCA	3 cut(s)	306, 419, 578
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 146, 195, 663
HpyF3I	CTNAG	3 cut(s)	213, 514, 591
HpySE526I	ACGT	2 cut(s)	44, 669
Hsp92I	GRCGYC	2 cut(s)	44, 68
Hsp92II	CATG	5 cut(s)	13, 186, 353, 742, 755
HspAI	GCGC	5 cut(s)	4, 38, 149, 230, 664
LmnI	GCTCC	3 cut(s)	112, 427, 473
LpnPI	CCDG	8 cut(s)	19, 95, 101, 465, 550, 577, 620, 642
Lsp1109I	GCAGC	4 cut(s)	62, 65, 214, 431
LweI	GCATC	2 cut(s)	225, 268
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	2 cut(s)	44, 669
MaeIII	GTNAC	2 cut(s)	430, 726
MbiI	CCGCTC	1 cut(s)	476
MboII	GAAGA	5 cut(s)	262, 481, 701, 716, 833
MfeI	CAATTG	1 cut(s)	801
MhlI	GDGCHC	1 cut(s)	191
MlsI	TGGCCA	1 cut(s)	737
MluCI	AATT	4 cut(s)	413, 695, 789, 801
MluNI	TGGCCA	1 cut(s)	737
MlyI	GAGTC	4 cut(s)	211, 324, 443, 530
MmeI	TCCRAC	3 cut(s)	150, 198, 451
MnlI	CCTC	6 cut(s)	58, 222, 586, 685, 802, 808
Mox20I	TGGCCA	1 cut(s)	737
MscI	TGGCCA	1 cut(s)	737
MseI	TTAA	3 cut(s)	20, 714, 761
Msp20I	TGGCCA	1 cut(s)	737
MspR9I	CCNGG	1 cut(s)	565
MunI	CAATTG	1 cut(s)	801
MvaI	CCWGG	1 cut(s)	565
MvnI	CGCG	2 cut(s)	6, 224
MwoI	GCNNNNNNNGC	4 cut(s)	15, 146, 195, 663
NcoI	CCATGG	1 cut(s)	182
NlaIII	CATG	5 cut(s)	13, 186, 353, 742, 755
NlaIV	GGNNCC	4 cut(s)	188, 375, 627, 682
NspV	TTCGAA	1 cut(s)	132
PceI	AGGCCT	1 cut(s)	563
PfeI	GAWTC	3 cut(s)	122, 134, 443
PflFI	GACNNNGTC	1 cut(s)	158
PkrI	GCNGC	7 cut(s)	8, 52, 55, 226, 229, 421, 478
PleI	GAGTC	4 cut(s)	210, 323, 443, 529
PpsI	GAGTC	4 cut(s)	210, 323, 443, 529
Psp6I	CCWGG	1 cut(s)	563
PspGI	CCWGG	1 cut(s)	563
PspN4I	GGNNCC	4 cut(s)	188, 375, 627, 682
PspPI	GGNCC	2 cut(s)	374, 680
PstNI	CAGNNNCTG	1 cut(s)	452
PsyI	GACNNNGTC	1 cut(s)	158
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
SaqAI	TTAA	3 cut(s)	20, 714, 761
SatI	GCNGC	7 cut(s)	7, 51, 54, 225, 228, 420, 477
Sau96I	GGNCC	2 cut(s)	374, 680
SchI	GAGTC	4 cut(s)	211, 324, 443, 530
ScrFI	CCNGG	1 cut(s)	565
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	9 cut(s)	47, 58, 117, 304, 342, 424, 627, 672, 733
SfaNI	GCATC	2 cut(s)	225, 268
SfuI	TTCGAA	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	4 cut(s)	413, 695, 789, 801
SseBI	AGGCCT	1 cut(s)	563
SsiI	CCGC	3 cut(s)	6, 224, 476
SspMI	CTAG	1 cut(s)	299
StuI	AGGCCT	1 cut(s)	563
StyD4I	CCNGG	1 cut(s)	563
StyI	CCWWGG	2 cut(s)	182, 377
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	2 cut(s)	47, 672
TaqI	TCGA	4 cut(s)	132, 153, 318, 533
TasI	AATT	4 cut(s)	413, 695, 789, 801
TatI	WGTACW	1 cut(s)	549
TauI	GCSGC	3 cut(s)	9, 227, 479
TfiI	GAWTC	3 cut(s)	122, 134, 443
Tru1I	TTAA	3 cut(s)	20, 714, 761
Tru9I	TTAA	3 cut(s)	20, 714, 761
TscAI	CASTG	1 cut(s)	78
TseI	GCWGC	4 cut(s)	50, 53, 227, 419
TspDTI	ATGAA	5 cut(s)	234, 635, 700, 795, 834
TspGWI	ACGGA	2 cut(s)	327, 514
TspRI	CASTG	1 cut(s)	78
Tth111I	GACNNNGTC	1 cut(s)	158
XapI	RAATTY	2 cut(s)	413, 695
XmiI	GTMKAC	1 cut(s)	290
XspI	CTAG	1 cut(s)	299
ZraI	GACGTC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.