Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004426.1

Orthogroup ID

OG0006094

Physical Location & Seq

Genomic Coordinates Reverse (-)

10931 .. 12808

Gene Structure 1878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004426.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atgcgcggcatgggtggcttaacgatgtggttctgggcgctgacgtcagcagcagctatattggaggcgtcagtgtcgtcgtcgtcgtcgtcgtcttgggtggctgacgggacggtgctggagctggacgattccaacttcgaatcggcgatttcagcgctcgacttggtcttggtggacttccacgccccatggtgcccccacagcaagagtctctctcctcagttggacgcggctgcgccgatgcttgcttcattgaagaaaccaatagtgatagcaaaagttgatgctgacaagtctacatctctagcttgcaaatacggagtcgatggatatcctacgctgaagctctttatacatggtgtcccccaagagtatatggggccaaggaaagccgatttgcttgttcgttatctcaagaaatttgcagctcccgatgttaccctacttgattcagactctgctattgctgattttgttggagcggcaggcacattcttccccatatatgttggttttggcttagatgagtccgtgatatcgaagttggcattgaagtacaaaaggaaggcctggttttcggttgcaaaggatttctctgaggatgtaatgctattgtatgattttgacaaggttcctgctctggtatcccttcatccaagttgcgatgagcgctacgtcttttacggcccctttgaagaggaattcttggaagatttcattaaacaaagtttgttacctttggccatgcccatcaaccatgacacattaaaatcattggacgatgatgaaaggaaaattatgttgacaattgtggaggatgaggatgaagaaagtcaaagaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005911 GO:0006457 GO:0006950 GO:0008150 GO:0009505 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0030054 GO:0030312 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0071944 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

282

Amino Acids

31.17

Weight (kDa)

4.62

Isoelectric Point (pI)

35.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35620
fragaria_vesca	FvH4_5g30970 FvH4_5g30970
malus_domestica	MD08G1220700.v1.1 MD09G1249700.v1.1 MD15G1411400.v1.1
prunus_persica	Prupe.1G557400_v2.0.a1
pyrus_communis	pycom08g19150 pycom15g36620
rosa_chinensis	RchiOBHm_Chr7g0226321 RchiOBHm_Chr7g0226361
rosa_laevigata	RLG00000001746 RLG00000001751
rosa_multiflora	Rmu_sc0001044.1_g000026 Rmu_sc0004322.1_g000024 Rmu_sc0004426.1_g000003 Rmu_sc0004426.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233030 Rroxscaffold_5G00366610
rosa_rugosa	Rorug07G0236600
rosa_samantha	Rh7AG383600 Rh7BG370400 Rh7CG403200 Rh7DG382000
rosa_wichuraiana	Rw7G032130 Rw7G032150 Rw7G032210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	195
AccBSI	CCGCTC	1 cut(s)	485
AccI	GTMKAC	1 cut(s)	299
AccII	CGCG	2 cut(s)	6, 233
AciI	CCGC	3 cut(s)	6, 233, 485
AcoI	YGGCCR	1 cut(s)	744
AcsI	RAATTY	2 cut(s)	422, 704
AcuI	CTGAAG	1 cut(s)	365
AcyI	GRCGYC	2 cut(s)	44, 68
AfaI	GTAC	1 cut(s)	560
AfeI	AGCGCT	2 cut(s)	159, 674
AgsI	TTSAA	3 cut(s)	259, 556, 698
AjnI	CCWGG	1 cut(s)	572
AluBI	AGCT	5 cut(s)	56, 124, 311, 349, 431
AluI	AGCT	5 cut(s)	56, 124, 311, 349, 431
Alw26I	GTCTC	1 cut(s)	218
AlwNI	CAGNNNCTG	1 cut(s)	461
Aor51HI	AGCGCT	2 cut(s)	159, 674
AoxI	GGCC	4 cut(s)	383, 570, 688, 744
ApeKI	GCWGC	4 cut(s)	50, 53, 236, 428
ApoI	RAATTY	2 cut(s)	422, 704
ArsI	GACNNNNNNTTYG	2 cut(s)	309, 341
AspLEI	GCGC	5 cut(s)	6, 40, 160, 241, 675
AspS9I	GGNCC	2 cut(s)	383, 689
AsuII	TTCGAA	1 cut(s)	141
BaeGI	GKGCMC	1 cut(s)	200
BalI	TGGCCA	1 cut(s)	746
BanI	GGYRCC	1 cut(s)	195
BbvI	GCAGC	4 cut(s)	62, 65, 223, 440
BccI	CCATC	2 cut(s)	323, 761
BceAI	ACGGC	1 cut(s)	703
BciT130I	CCWGG	1 cut(s)	574
BciVI	GTATCC	1 cut(s)	658
BcoDI	GTCTC	1 cut(s)	218
BfaI	CTAG	1 cut(s)	308
BfoI	RGCGCY	3 cut(s)	41, 161, 676
BfuI	GTATCC	1 cut(s)	658
BisI	GCNGC	7 cut(s)	7, 51, 54, 234, 237, 429, 486
BlsI	GCNGC	7 cut(s)	8, 52, 55, 235, 238, 430, 487
Bme1390I	CCNGG	1 cut(s)	574
BmgT120I	GGNCC	2 cut(s)	383, 689
BmiI	GGNNCC	4 cut(s)	197, 384, 636, 691
BmrFI	CCNGG	1 cut(s)	574
BmsI	GCATC	2 cut(s)	234, 277
BplI	GAGNNNNNCTC	2 cut(s)	202, 234
BpmI	CTGGAG	1 cut(s)	140
Bpu14I	TTCGAA	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	401
BsaBI	GATNNNNATC	1 cut(s)	333
BsaHI	GRCGYC	2 cut(s)	44, 68
BsaJI	CCNNGG	2 cut(s)	191, 386
Bse8I	GATNNNNATC	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	574
BseDI	CCNNGG	2 cut(s)	191, 386
BseGI	GGATG	4 cut(s)	610, 655, 826, 832
BseJI	GATNNNNATC	1 cut(s)	333
BseMII	CTCAG	2 cut(s)	236, 591
BseRI	GAGGAG	1 cut(s)	210
BseSI	GKGCMC	1 cut(s)	200
BseXI	GCAGC	4 cut(s)	62, 65, 223, 440
Bsh1236I	CGCG	2 cut(s)	6, 233
BshFI	GGCC	4 cut(s)	385, 572, 690, 746
BshNI	GGYRCC	1 cut(s)	195
BslFI	GGGAC	2 cut(s)	124, 350
BsmAI	GTCTC	1 cut(s)	218
BsmFI	GGGAC	2 cut(s)	124, 350
BsnI	GGCC	4 cut(s)	385, 572, 690, 746
Bsp119I	TTCGAA	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp19I	CCATGG	1 cut(s)	191
BspACI	CCGC	3 cut(s)	6, 233, 485
BspANI	GGCC	4 cut(s)	385, 572, 690, 746
BspCNI	CTCAG	2 cut(s)	235, 592
BspFNI	CGCG	2 cut(s)	6, 233
BspLI	GGNNCC	4 cut(s)	197, 384, 636, 691
BspT104I	TTCGAA	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	195
BsrBI	CCGCTC	1 cut(s)	485
BssECI	CCNNGG	2 cut(s)	191, 386
BssNI	GRCGYC	2 cut(s)	44, 68
BssT1I	CCWWGG	2 cut(s)	191, 386
Bst2UI	CCWGG	1 cut(s)	574
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	693
BstACI	GRCGYC	2 cut(s)	44, 68
BstBI	TTCGAA	1 cut(s)	141
BstC8I	GCNNGC	3 cut(s)	249, 313, 490
BstDEI	CTNAG	3 cut(s)	222, 523, 600
BstDSI	CCRYGG	1 cut(s)	191
BstF5I	GGATG	4 cut(s)	610, 655, 826, 832
BstFNI	CGCG	2 cut(s)	6, 233
BstH2I	RGCGCY	3 cut(s)	41, 161, 676
BstHHI	GCGC	5 cut(s)	6, 40, 160, 241, 675
BstMAI	GTCTC	1 cut(s)	218
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 155, 204, 672
BstNI	CCWGG	1 cut(s)	574
BstSCI	CCNGG	1 cut(s)	572
BstSLI	GKGCMC	1 cut(s)	200
BstUI	CGCG	2 cut(s)	6, 233
BstV1I	GCAGC	4 cut(s)	62, 65, 223, 440
BsuI	GTATCC	1 cut(s)	658
BsuRI	GGCC	4 cut(s)	385, 572, 690, 746
BtgI	CCRYGG	1 cut(s)	191
BtgZI	GCGATG	1 cut(s)	681
BtsCI	GGATG	4 cut(s)	610, 655, 826, 832
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	3 cut(s)	249, 313, 490
CaiI	CAGNNNCTG	1 cut(s)	461
CfoI	GCGC	5 cut(s)	6, 40, 160, 241, 675
Cfr13I	GGNCC	2 cut(s)	383, 689
CseI	GACGC	2 cut(s)	57, 239
Csp6I	GTAC	1 cut(s)	559
CviAII	CATG	5 cut(s)	10, 192, 359, 748, 761
CviQI	GTAC	1 cut(s)	559
DdeI	CTNAG	3 cut(s)	222, 523, 600
EaeI	YGGCCR	1 cut(s)	744
Eam1104I	CTCTTC	1 cut(s)	693
EarI	CTCTTC	1 cut(s)	693
Eco130I	CCWWGG	2 cut(s)	191, 386
Eco147I	AGGCCT	1 cut(s)	572
Eco32I	GATATC	2 cut(s)	335, 540
Eco47III	AGCGCT	2 cut(s)	159, 674
Eco57I	CTGAAG	1 cut(s)	365
EcoRI	GAATTC	1 cut(s)	704
EcoRII	CCWGG	1 cut(s)	572
EcoRV	GATATC	2 cut(s)	335, 540
EcoT14I	CCWWGG	2 cut(s)	191, 386
ErhI	CCWWGG	2 cut(s)	191, 386
FaeI	CATG	5 cut(s)	13, 195, 362, 751, 764
FaqI	GGGAC	2 cut(s)	124, 350
FatI	CATG	5 cut(s)	9, 191, 358, 747, 760
FblI	GTMKAC	1 cut(s)	299
Fnu4HI	GCNGC	7 cut(s)	7, 51, 54, 234, 237, 429, 486
FokI	GGATG	4 cut(s)	617, 642, 833, 839
Fsp4HI	GCNGC	7 cut(s)	7, 51, 54, 234, 237, 429, 486
FspBI	CTAG	1 cut(s)	308
GlaI	GCGC	5 cut(s)	5, 39, 159, 240, 674
GluI	GCNGC	7 cut(s)	7, 51, 54, 234, 237, 429, 486
GsuI	CTGGAG	1 cut(s)	140
HaeII	RGCGCY	3 cut(s)	41, 161, 676
HaeIII	GGCC	4 cut(s)	385, 572, 690, 746
HgaI	GACGC	2 cut(s)	57, 239
HhaI	GCGC	5 cut(s)	6, 40, 160, 241, 675
Hin1I	GRCGYC	2 cut(s)	44, 68
Hin1II	CATG	5 cut(s)	13, 195, 362, 751, 764
Hin6I	GCGC	5 cut(s)	4, 38, 158, 239, 673
HinP1I	GCGC	5 cut(s)	4, 38, 158, 239, 673
HincII	GTYRAC	1 cut(s)	807
HindII	GTYRAC	1 cut(s)	807
HinfI	GANTC	7 cut(s)	131, 143, 211, 324, 452, 458, 530
Hpy166II	GTNNAC	3 cut(s)	178, 300, 807
Hpy188I	TCNGA	2 cut(s)	457, 601
Hpy188III	TCNNGA	2 cut(s)	418, 434
Hpy8I	GTNNAC	3 cut(s)	178, 300, 807
Hpy99I	CGWCG	5 cut(s)	82, 85, 88, 91, 94
HpyAV	CCTTC	2 cut(s)	562, 662
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	2 cut(s)	44, 678
HpyCH4V	TGCA	3 cut(s)	315, 428, 587
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 155, 204, 672
HpyF3I	CTNAG	3 cut(s)	222, 523, 600
HpySE526I	ACGT	2 cut(s)	44, 678
Hsp92I	GRCGYC	2 cut(s)	44, 68
Hsp92II	CATG	5 cut(s)	13, 195, 362, 751, 764
HspAI	GCGC	5 cut(s)	4, 38, 158, 239, 673
LmnI	GCTCC	3 cut(s)	121, 436, 482
LpnPI	CCDG	8 cut(s)	19, 104, 110, 474, 559, 586, 629, 651
Lsp1109I	GCAGC	4 cut(s)	62, 65, 223, 440
LweI	GCATC	2 cut(s)	234, 277
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	2 cut(s)	44, 678
MaeIII	GTNAC	2 cut(s)	439, 735
MbiI	CCGCTC	1 cut(s)	485
MboII	GAAGA	5 cut(s)	271, 490, 710, 725, 842
MfeI	CAATTG	1 cut(s)	810
MhlI	GDGCHC	1 cut(s)	200
MlsI	TGGCCA	1 cut(s)	746
MluCI	AATT	4 cut(s)	422, 704, 798, 810
MluNI	TGGCCA	1 cut(s)	746
MlyI	GAGTC	4 cut(s)	220, 333, 452, 539
MmeI	TCCRAC	3 cut(s)	159, 207, 460
MnlI	CCTC	6 cut(s)	58, 231, 595, 694, 811, 817
Mox20I	TGGCCA	1 cut(s)	746
MscI	TGGCCA	1 cut(s)	746
MseI	TTAA	3 cut(s)	20, 723, 770
Msp20I	TGGCCA	1 cut(s)	746
MspR9I	CCNGG	1 cut(s)	574
MunI	CAATTG	1 cut(s)	810
MvaI	CCWGG	1 cut(s)	574
MvnI	CGCG	2 cut(s)	6, 233
MwoI	GCNNNNNNNGC	4 cut(s)	15, 155, 204, 672
NcoI	CCATGG	1 cut(s)	191
NlaIII	CATG	5 cut(s)	13, 195, 362, 751, 764
NlaIV	GGNNCC	4 cut(s)	197, 384, 636, 691
NspV	TTCGAA	1 cut(s)	141
PceI	AGGCCT	1 cut(s)	572
PcsI	WCGNNNNNNNCGW	3 cut(s)	83, 86, 89
PfeI	GAWTC	3 cut(s)	131, 143, 452
PflFI	GACNNNGTC	1 cut(s)	167
PkrI	GCNGC	7 cut(s)	8, 52, 55, 235, 238, 430, 487
PleI	GAGTC	4 cut(s)	219, 332, 452, 538
PpsI	GAGTC	4 cut(s)	219, 332, 452, 538
Psp6I	CCWGG	1 cut(s)	572
PspGI	CCWGG	1 cut(s)	572
PspN4I	GGNNCC	4 cut(s)	197, 384, 636, 691
PspPI	GGNCC	2 cut(s)	383, 689
PstNI	CAGNNNCTG	1 cut(s)	461
PsyI	GACNNNGTC	1 cut(s)	167
RsaI	GTAC	1 cut(s)	560
RsaNI	GTAC	1 cut(s)	559
SaqAI	TTAA	3 cut(s)	20, 723, 770
SatI	GCNGC	7 cut(s)	7, 51, 54, 234, 237, 429, 486
Sau96I	GGNCC	2 cut(s)	383, 689
SchI	GAGTC	4 cut(s)	220, 333, 452, 539
ScrFI	CCNGG	1 cut(s)	574
SduI	GDGCHC	1 cut(s)	200
SetI	ASST	9 cut(s)	47, 58, 126, 313, 351, 433, 636, 681, 742
SfaNI	GCATC	2 cut(s)	234, 277
SfuI	TTCGAA	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
Sse9I	AATT	4 cut(s)	422, 704, 798, 810
SseBI	AGGCCT	1 cut(s)	572
SsiI	CCGC	3 cut(s)	6, 233, 485
SspMI	CTAG	1 cut(s)	308
StuI	AGGCCT	1 cut(s)	572
StyD4I	CCNGG	1 cut(s)	572
StyI	CCWWGG	2 cut(s)	191, 386
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	2 cut(s)	47, 681
TaqI	TCGA	4 cut(s)	141, 162, 327, 542
TasI	AATT	4 cut(s)	422, 704, 798, 810
TatI	WGTACW	1 cut(s)	558
TauI	GCSGC	3 cut(s)	9, 236, 488
TfiI	GAWTC	3 cut(s)	131, 143, 452
Tru1I	TTAA	3 cut(s)	20, 723, 770
Tru9I	TTAA	3 cut(s)	20, 723, 770
TscAI	CASTG	1 cut(s)	78
TseI	GCWGC	4 cut(s)	50, 53, 236, 428
TspDTI	ATGAA	5 cut(s)	243, 644, 709, 804, 843
TspGWI	ACGGA	2 cut(s)	336, 523
TspRI	CASTG	1 cut(s)	78
Tth111I	GACNNNGTC	1 cut(s)	167
XapI	RAATTY	2 cut(s)	422, 704
XmiI	GTMKAC	1 cut(s)	299
XspI	CTAG	1 cut(s)	308
ZraI	GACGTC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.