Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0006094

Physical Location & Seq

Genomic Coordinates Reverse (-)

50047132 .. 50246282

Gene Structure 199151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG383600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGCGCGGCATGGGTGGCTTAACGGTGTGGTTCTGGGCGCTGACGTCAGCAGCAGCTATATTGGAGGCGTCAGTGTCGTCGTCGTCGTCTTGGGTGGCTGACGGGACGGTGCTGGAGCTGGACGATTCCAACTTCGAATCAGCGATTTCAGCGCTCGACTTGGTCTTGGTGGACTTCCACGCCCCATGGTGCCCCCACAGCAAGAGTCTCTCTCCTCAGTTGGACGCGGCTGCGCCGATGCTTGCTTCATTGAAGAAACCAATAGTGATAGCAAAAGTTGATGCTGACAAGTCTACATCTCTAGCTTGCAAATGCGGAGTCGATGGATATCCTACGCTGAAGCTCTTTATACATGGTGTCCCCCAAGAGTATAAAGGGCCGAGGAAAGCCGATTTGCTTGTTAGTTATCTCAAGAAATTCGCAGCTCCCGATGTTACCCTACTTGATTCAGACTCTGCTGTTACTGATTTTGTTGGAGCAGCAGGCACATTCTTCCCTATTTATGTTGGTTTTGGCTTAGATGAGTCCCTGATATCTGAGTTGGGATTGAAGTACAAAAGGAAGGCCTGGTTTTCTGTTGCAAAGGATTTCTCTGAGGATGTAATGATGTTGTATGATTTTGACAAGGTTCCTGCTTTGGTATCCCTTCATCCAAGTTACGATGAGCGCCACGTCTTTTACGGCCCCTTTGAAGAGGAATTTTTGGAAGATTTCATAAAACAAAGTTTGTTACCTTTGGCCATACCCATCAACTATGACACATTAAAATCATTGGACGATGATGAAAGAAAAATTGTGTTGACAATTGTGGAGGATGAGGATGAAGGGAAGTCAAAGAACTTGATCAAGATTTTGAAATCTGCTGCATCCGCTAATCGAGACCTTGTATTTGGTTATGTCGGGATCAAACAATGGGAAGATTTTGCTGAAACATTCGGAGCGAACAAGAAGACAAAACTACCAAAAATGGTTGTTTGGGATCGAATGGAGGAGTACTTAACAGTCAACGGCTCAGAAAGCATTGACGGTGAAGATCAGGCATCTCAAGTCTCACAGTTTCTTGAAGGATATAAGGAAGGAAGAACGATTAAAGAAAAAGTTGGTGGCAGTGTGTCGCTTACTGCCTTTATATCTTCATTTATTGGGATTGGAACTGTGTATATATTAGTTTTTGTGGTAGCGACGATAATTCTTATTAGAAAAGCCACTGAGGAAGAACCTCTCAGGGTTGGTAGGGGAGATAAGGTTGATCCTGCTACAAGTTCTACTGCCGAGGCTGAAAGCAGTGAGCATAAAGCTGGAGAAAAGGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005911 GO:0006457 GO:0006950 GO:0008150 GO:0009505 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0030054 GO:0030312 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0071944 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

438

Amino Acids

48.07

Weight (kDa)

4.78

Isoelectric Point (pI)

31.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	37 - 139	2.8e-22	Thioredoxin
Thioredoxin_6	PF13848	197 - 354	4.4e-10	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35620
fragaria_vesca	FvH4_5g30970 FvH4_5g30970
malus_domestica	MD08G1220700.v1.1 MD09G1249700.v1.1 MD15G1411400.v1.1
prunus_persica	Prupe.1G557400_v2.0.a1
pyrus_communis	pycom08g19150 pycom15g36620
rosa_chinensis	RchiOBHm_Chr7g0226321 RchiOBHm_Chr7g0226361
rosa_laevigata	RLG00000001746 RLG00000001751
rosa_multiflora	Rmu_sc0001044.1_g000026 Rmu_sc0004322.1_g000024 Rmu_sc0004426.1_g000003 Rmu_sc0004426.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233030 Rroxscaffold_5G00366610
rosa_rugosa	Rorug07G0236600
rosa_samantha	Rh7AG383600 Rh7BG370400 Rh7CG403200 Rh7DG382000
rosa_wichuraiana	Rw7G032130 Rw7G032150 Rw7G032210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	189
AccI	GTMKAC	1 cut(s)	293
AccII	CGCG	2 cut(s)	6, 227
AciI	CCGC	4 cut(s)	6, 227, 315, 870
AclWI	GGATC	3 cut(s)	911, 987, 1244
AcoI	YGGCCR	1 cut(s)	738
AcsI	RAATTY	2 cut(s)	416, 698
AcuI	CTGAAG	1 cut(s)	359
AcyI	GRCGYC	2 cut(s)	44, 68
AfaI	GTAC	2 cut(s)	554, 995
AfeI	AGCGCT	1 cut(s)	153
AgsI	TTSAA	5 cut(s)	253, 550, 692, 856, 1064
AjiI	CACGTC	1 cut(s)	673
AjnI	CCWGG	1 cut(s)	566
AluBI	AGCT	6 cut(s)	56, 118, 305, 343, 425, 1298
AluI	AGCT	6 cut(s)	56, 118, 305, 343, 425, 1298
Alw26I	GTCTC	3 cut(s)	212, 873, 1054
AlwI	GGATC	3 cut(s)	911, 987, 1244
AlwNI	CAGNNNCTG	1 cut(s)	455
Aor51HI	AGCGCT	1 cut(s)	153
AoxI	GGCC	4 cut(s)	377, 564, 682, 738
ApeKI	GCWGC	6 cut(s)	50, 53, 230, 422, 479, 863
ApoI	RAATTY	2 cut(s)	416, 698
ArsI	GACNNNNNNTTYG	4 cut(s)	303, 335, 872, 904
AspLEI	GCGC	5 cut(s)	6, 40, 154, 235, 669
AspS9I	GGNCC	2 cut(s)	377, 683
AsuHPI	GGTGA	1 cut(s)	1040
AsuII	TTCGAA	1 cut(s)	135
BaeGI	GKGCMC	1 cut(s)	194
BalI	TGGCCA	1 cut(s)	740
BanI	GGYRCC	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	956
BbvI	GCAGC	6 cut(s)	62, 65, 217, 434, 491, 850
BccI	CCATC	2 cut(s)	317, 755
BceAI	ACGGC	2 cut(s)	697, 1024
BciT130I	CCWGG	1 cut(s)	568
BciVI	GTATCC	1 cut(s)	652
BclI	TGATCA	1 cut(s)	843
BcoDI	GTCTC	3 cut(s)	212, 873, 1054
BfaI	CTAG	1 cut(s)	302
BfoI	RGCGCY	3 cut(s)	41, 155, 670
BfuI	GTATCC	1 cut(s)	652
BisI	GCNGC	8 cut(s)	7, 51, 54, 228, 231, 423, 480, 864
BlsI	GCNGC	8 cut(s)	8, 52, 55, 229, 232, 424, 481, 865
BmcAI	AGTACT	1 cut(s)	995
Bme1390I	CCNGG	1 cut(s)	568
BmgBI	CACGTC	1 cut(s)	673
BmgT120I	GGNCC	2 cut(s)	377, 683
BmiI	GGNNCC	3 cut(s)	191, 630, 685
BmrFI	CCNGG	1 cut(s)	568
BmsI	GCATC	4 cut(s)	228, 271, 875, 1049
BpiI	GAAGAC	1 cut(s)	956
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
BpmI	CTGGAG	1 cut(s)	134
Bpu14I	TTCGAA	1 cut(s)	135
BpuEI	CTTGAG	2 cut(s)	395, 1029
BsaBI	GATNNNNATC	1 cut(s)	327
BsaHI	GRCGYC	2 cut(s)	44, 68
BsaI	GGTCTC	1 cut(s)	873
BsaJI	CCNNGG	3 cut(s)	185, 380, 1272
BsaXI	ACNNNNNCTCC	2 cut(s)	1230, 1260
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	568
BseDI	CCNNGG	3 cut(s)	185, 380, 1272
BseGI	GGATG	5 cut(s)	604, 649, 820, 826, 866
BseJI	GATNNNNATC	1 cut(s)	327
BseMII	CTCAG	6 cut(s)	230, 528, 585, 1026, 1200, 1237
BseRI	GAGGAG	2 cut(s)	204, 1004
BseSI	GKGCMC	1 cut(s)	194
BseXI	GCAGC	6 cut(s)	62, 65, 217, 434, 491, 850
Bsh1236I	CGCG	2 cut(s)	6, 227
BshFI	GGCC	4 cut(s)	379, 566, 684, 740
BshNI	GGYRCC	1 cut(s)	189
BslFI	GGGAC	3 cut(s)	118, 344, 511
BsmAI	GTCTC	3 cut(s)	212, 873, 1054
BsmFI	GGGAC	3 cut(s)	118, 344, 511
BsnI	GGCC	4 cut(s)	379, 566, 684, 740
Bso31I	GGTCTC	1 cut(s)	873
Bsp119I	TTCGAA	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	194
Bsp143I	GATC	5 cut(s)	843, 903, 979, 1033, 1249
Bsp19I	CCATGG	1 cut(s)	185
BspACI	CCGC	4 cut(s)	6, 227, 315, 870
BspANI	GGCC	4 cut(s)	379, 566, 684, 740
BspCNI	CTCAG	6 cut(s)	229, 529, 586, 1025, 1201, 1236
BspFNI	CGCG	2 cut(s)	6, 227
BspLI	GGNNCC	3 cut(s)	191, 630, 685
BspPI	GGATC	3 cut(s)	911, 987, 1244
BspT104I	TTCGAA	1 cut(s)	135
BspT107I	GGYRCC	1 cut(s)	189
BspTNI	GGTCTC	1 cut(s)	873
BssECI	CCNNGG	3 cut(s)	185, 380, 1272
BssMI	GATC	5 cut(s)	843, 903, 979, 1033, 1249
BssNI	GRCGYC	2 cut(s)	44, 68
BssT1I	CCWWGG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	568
Bst4CI	ACNGT	6 cut(s)	25, 109, 1003, 1028, 1056, 1156
Bst6I	CTCTTC	1 cut(s)	687
BstACI	GRCGYC	2 cut(s)	44, 68
BstBI	TTCGAA	1 cut(s)	135
BstC8I	GCNNGC	3 cut(s)	243, 307, 484
BstDEI	CTNAG	7 cut(s)	216, 517, 537, 594, 1012, 1209, 1223
BstDSI	CCRYGG	1 cut(s)	185
BstF5I	GGATG	5 cut(s)	604, 649, 820, 826, 866
BstFNI	CGCG	2 cut(s)	6, 227
BstH2I	RGCGCY	3 cut(s)	41, 155, 670
BstHHI	GCGC	5 cut(s)	6, 40, 154, 235, 669
BstKTI	GATC	5 cut(s)	846, 906, 982, 1036, 1252
BstMAI	GTCTC	3 cut(s)	212, 873, 1054
BstMBI	GATC	5 cut(s)	843, 903, 979, 1033, 1249
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 149, 198, 869, 1017
BstNI	CCWGG	1 cut(s)	568
BstSCI	CCNGG	1 cut(s)	566
BstSLI	GKGCMC	1 cut(s)	194
BstUI	CGCG	2 cut(s)	6, 227
BstV1I	GCAGC	6 cut(s)	62, 65, 217, 434, 491, 850
BstV2I	GAAGAC	1 cut(s)	956
BsuI	GTATCC	1 cut(s)	652
BsuRI	GGCC	4 cut(s)	379, 566, 684, 740
BtgI	CCRYGG	1 cut(s)	185
BtrI	CACGTC	1 cut(s)	673
BtsCI	GGATG	5 cut(s)	604, 649, 820, 826, 866
BtsI	GCAGTG	2 cut(s)	1114, 1291
BtsIMutI	CAGTG	4 cut(s)	78, 1114, 1206, 1291
Cac8I	GCNNGC	3 cut(s)	243, 307, 484
CaiI	CAGNNNCTG	1 cut(s)	455
CfoI	GCGC	5 cut(s)	6, 40, 154, 235, 669
Cfr13I	GGNCC	2 cut(s)	377, 683
CseI	GACGC	2 cut(s)	57, 233
Csp6I	GTAC	2 cut(s)	553, 994
CviAII	CATG	3 cut(s)	10, 186, 353
CviQI	GTAC	2 cut(s)	553, 994
DdeI	CTNAG	7 cut(s)	216, 517, 537, 594, 1012, 1209, 1223
DpnI	GATC	5 cut(s)	845, 905, 981, 1035, 1251
DpnII	GATC	5 cut(s)	843, 903, 979, 1033, 1249
EaeI	YGGCCR	1 cut(s)	738
Eam1104I	CTCTTC	1 cut(s)	687
EarI	CTCTTC	1 cut(s)	687
Eco130I	CCWWGG	1 cut(s)	185
Eco147I	AGGCCT	1 cut(s)	566
Eco31I	GGTCTC	1 cut(s)	873
Eco32I	GATATC	2 cut(s)	329, 534
Eco47III	AGCGCT	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	566
EcoRV	GATATC	2 cut(s)	329, 534
EcoT14I	CCWWGG	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	3 cut(s)	13, 189, 356
FaqI	GGGAC	3 cut(s)	118, 344, 511
FatI	CATG	3 cut(s)	9, 185, 352
FbaI	TGATCA	1 cut(s)	843
FblI	GTMKAC	1 cut(s)	293
Fnu4HI	GCNGC	8 cut(s)	7, 51, 54, 228, 231, 423, 480, 864
FokI	GGATG	5 cut(s)	611, 636, 827, 833, 853
Fsp4HI	GCNGC	8 cut(s)	7, 51, 54, 228, 231, 423, 480, 864
FspBI	CTAG	1 cut(s)	302
GlaI	GCGC	5 cut(s)	5, 39, 153, 234, 668
GluI	GCNGC	8 cut(s)	7, 51, 54, 228, 231, 423, 480, 864
GsuI	CTGGAG	1 cut(s)	134
HaeII	RGCGCY	3 cut(s)	41, 155, 670
HaeIII	GGCC	4 cut(s)	379, 566, 684, 740
HgaI	GACGC	2 cut(s)	57, 233
HhaI	GCGC	5 cut(s)	6, 40, 154, 235, 669
Hin1I	GRCGYC	2 cut(s)	44, 68
Hin1II	CATG	3 cut(s)	13, 189, 356
Hin6I	GCGC	5 cut(s)	4, 38, 152, 233, 667
HinP1I	GCGC	5 cut(s)	4, 38, 152, 233, 667
HincII	GTYRAC	2 cut(s)	801, 1006
HindII	GTYRAC	2 cut(s)	801, 1006
HinfI	GANTC	7 cut(s)	125, 137, 205, 318, 446, 452, 524
HphI	GGTGA	1 cut(s)	1040
Hpy166II	GTNNAC	4 cut(s)	172, 294, 801, 1006
Hpy188I	TCNGA	5 cut(s)	451, 538, 595, 938, 1015
Hpy188III	TCNNGA	6 cut(s)	412, 428, 847, 878, 901, 1061
Hpy8I	GTNNAC	4 cut(s)	172, 294, 801, 1006
Hpy99I	CGWCG	4 cut(s)	82, 85, 88, 1186
HpyAV	CCTTC	5 cut(s)	556, 656, 818, 1058, 1070
HpyCH4III	ACNGT	6 cut(s)	25, 109, 1003, 1028, 1056, 1156
HpyCH4IV	ACGT	2 cut(s)	44, 672
HpyCH4V	TGCA	3 cut(s)	309, 581, 866
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 149, 198, 869, 1017
HpyF3I	CTNAG	7 cut(s)	216, 517, 537, 594, 1012, 1209, 1223
HpySE526I	ACGT	2 cut(s)	44, 672
Hsp92I	GRCGYC	2 cut(s)	44, 68
Hsp92II	CATG	3 cut(s)	13, 189, 356
HspAI	GCGC	5 cut(s)	4, 38, 152, 233, 667
Ksp22I	TGATCA	1 cut(s)	843
Kzo9I	GATC	5 cut(s)	843, 903, 979, 1033, 1249
LmnI	GCTCC	4 cut(s)	115, 430, 476, 938
Lsp1109I	GCAGC	6 cut(s)	62, 65, 217, 434, 491, 850
LweI	GCATC	4 cut(s)	228, 271, 875, 1049
MaeI	CTAG	1 cut(s)	302
MaeII	ACGT	2 cut(s)	44, 672
MaeIII	GTNAC	4 cut(s)	433, 460, 656, 729
MalI	GATC	5 cut(s)	845, 905, 981, 1035, 1251
MboI	GATC	5 cut(s)	843, 903, 979, 1033, 1249
MfeI	CAATTG	1 cut(s)	804
MhlI	GDGCHC	1 cut(s)	194
MlsI	TGGCCA	1 cut(s)	740
MluCI	AATT	5 cut(s)	416, 698, 792, 804, 1188
MluNI	TGGCCA	1 cut(s)	740
MlyI	GAGTC	4 cut(s)	214, 327, 446, 533
MmeI	TCCRAC	3 cut(s)	153, 201, 454
Mox20I	TGGCCA	1 cut(s)	740
MscI	TGGCCA	1 cut(s)	740
MseI	TTAA	4 cut(s)	20, 764, 998, 1089
Msp20I	TGGCCA	1 cut(s)	740
MspR9I	CCNGG	1 cut(s)	568
MunI	CAATTG	1 cut(s)	804
MvaI	CCWGG	1 cut(s)	568
MvnI	CGCG	2 cut(s)	6, 227
MwoI	GCNNNNNNNGC	5 cut(s)	15, 149, 198, 869, 1017
NcoI	CCATGG	1 cut(s)	185
NdeII	GATC	5 cut(s)	843, 903, 979, 1033, 1249
NlaIII	CATG	3 cut(s)	13, 189, 356
NlaIV	GGNNCC	3 cut(s)	191, 630, 685
NmeAIII	GCCGAG	2 cut(s)	405, 1297
NspV	TTCGAA	1 cut(s)	135
PceI	AGGCCT	1 cut(s)	566
PcsI	WCGNNNNNNNCGW	2 cut(s)	83, 426
PfeI	GAWTC	3 cut(s)	125, 137, 446
PflFI	GACNNNGTC	1 cut(s)	161
PkrI	GCNGC	8 cut(s)	8, 52, 55, 229, 232, 424, 481, 865
PleI	GAGTC	4 cut(s)	213, 326, 446, 532
PpsI	GAGTC	4 cut(s)	213, 326, 446, 532
Psp6I	CCWGG	1 cut(s)	566
PspGI	CCWGG	1 cut(s)	566
PspN4I	GGNNCC	3 cut(s)	191, 630, 685
PspPI	GGNCC	2 cut(s)	377, 683
PstNI	CAGNNNCTG	1 cut(s)	455
PsyI	GACNNNGTC	1 cut(s)	161
RsaI	GTAC	2 cut(s)	554, 995
RsaNI	GTAC	2 cut(s)	553, 994
SaqAI	TTAA	4 cut(s)	20, 764, 998, 1089
SatI	GCNGC	8 cut(s)	7, 51, 54, 228, 231, 423, 480, 864
Sau3AI	GATC	5 cut(s)	843, 903, 979, 1033, 1249
Sau96I	GGNCC	2 cut(s)	377, 683
ScaI	AGTACT	1 cut(s)	995
SchI	GAGTC	4 cut(s)	214, 327, 446, 533
ScrFI	CCNGG	1 cut(s)	568
SduI	GDGCHC	1 cut(s)	194
SfaNI	GCATC	4 cut(s)	228, 271, 875, 1049
SfuI	TTCGAA	1 cut(s)	135
SmlI	CTYRAG	2 cut(s)	410, 1044
SmoI	CTYRAG	2 cut(s)	410, 1044
Sse9I	AATT	5 cut(s)	416, 698, 792, 804, 1188
SseBI	AGGCCT	1 cut(s)	566
SsiI	CCGC	4 cut(s)	6, 227, 315, 870
SspMI	CTAG	1 cut(s)	302
StuI	AGGCCT	1 cut(s)	566
StyD4I	CCNGG	1 cut(s)	566
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	6 cut(s)	25, 109, 1003, 1028, 1056, 1156
TaiI	ACGT	2 cut(s)	47, 675
TaqI	TCGA	5 cut(s)	135, 156, 321, 877, 982
TasI	AATT	5 cut(s)	416, 698, 792, 804, 1188
TatI	WGTACW	2 cut(s)	552, 993
TauI	GCSGC	2 cut(s)	9, 230
TfiI	GAWTC	3 cut(s)	125, 137, 446
Tru1I	TTAA	4 cut(s)	20, 764, 998, 1089
Tru9I	TTAA	4 cut(s)	20, 764, 998, 1089
TscAI	CASTG	4 cut(s)	78, 1114, 1213, 1291
TseI	GCWGC	6 cut(s)	50, 53, 230, 422, 479, 863
TspDTI	ATGAA	6 cut(s)	237, 638, 703, 798, 837, 1125
TspRI	CASTG	4 cut(s)	78, 1114, 1213, 1291
Tth111I	GACNNNGTC	1 cut(s)	161
XapI	RAATTY	2 cut(s)	416, 698
XmiI	GTMKAC	1 cut(s)	293
XspI	CTAG	1 cut(s)	302
ZraI	GACGTC	1 cut(s)	45
ZrmI	AGTACT	1 cut(s)	995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.