Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006094

Physical Location & Seq

Genomic Coordinates Forward (+)

20029649 .. 20031557

Gene Structure 1909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001746

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGCGCGGCATGGGTGGCTTAACGGTGTGGTTCTGGGCGCTGACGTCAGCAGCAGCTATATTGGGGGCGGCAGTGTCGTCATCGTCGTCGTCGTCGTCGTCGTTGTCTTGGGTGGCTGACGGGACGGTGCTGGAGCTGGACGATTCCAACTTCGAATCGACGATTTCAGCGCTCGAGTTGGTCTTGGTGGACTTCCACGCCCCATGGTGCCCCCACAGCAAGAGTCTCTCTCCTCAGTTGGAAGCGGCTGCCCCGATGCTTGCTTCATTGAAGAAACCAATAGTGATAGCAAAAGTTGATGCTGACAAGTCTACATCTCTAGCTTGCAAATACGGAGTCGATGGATATCCTACGCTGAAGCTCTTTATACATGGTGTCCCCCAAGAGTATATAGGGCCAAGGAAAGCCGATTTACTTGTTCGTTATCTCAAGAAATTTGCAGCTCCCGATGTTACCCTACTTGATTCAGACTCTGCTATTGCTGATTTTGTTGGAGCGGCAGGCACATTCTTCCCCATATATGTTGGTTTTGGCGTAGATGAGTCCGTGATATCTAAGTTGGCTTTGAAGTACAAAAGGAAGGCCTGGTTTTCTGTTGCAGAGGATTTCTCTGAGGATGTAATGCTATTGTATGATTTTGACATGGTTCCTGCTCTGGTATCCCTTCATCCAAGTTGCGATGAGCGCTACATCTTTTACGGCCCCTTTGAAGAGGAATTTTTGGAGGATTTCATAAAACAAAGTTTGTTACCTTTGGCCATGCCCATCAACCATGACACATTAAAATCATTGGACGATGATGAAAGGAAAATTATGTTGACAATTCTGGAGGATGAGGATGAAGAAAGTCAAAGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005911 GO:0006457 GO:0006950 GO:0008150 GO:0009505 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0030054 GO:0030312 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0071944 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

287

Amino Acids

31.48

Weight (kDa)

4.54

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	43 - 145	1e-22	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35620
fragaria_vesca	FvH4_5g30970 FvH4_5g30970
malus_domestica	MD08G1220700.v1.1 MD09G1249700.v1.1 MD15G1411400.v1.1
prunus_persica	Prupe.1G557400_v2.0.a1
pyrus_communis	pycom08g19150 pycom15g36620
rosa_chinensis	RchiOBHm_Chr7g0226321 RchiOBHm_Chr7g0226361
rosa_laevigata	RLG00000001746 RLG00000001751
rosa_multiflora	Rmu_sc0001044.1_g000026 Rmu_sc0004322.1_g000024 Rmu_sc0004426.1_g000003 Rmu_sc0004426.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233030 Rroxscaffold_5G00366610
rosa_rugosa	Rorug07G0236600
rosa_samantha	Rh7AG383600 Rh7BG370400 Rh7CG403200 Rh7DG382000
rosa_wichuraiana	Rw7G032130 Rw7G032150 Rw7G032210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	207
AccBSI	CCGCTC	1 cut(s)	497
AccI	GTMKAC	1 cut(s)	311
AccII	CGCG	1 cut(s)	6
AciI	CCGC	4 cut(s)	6, 68, 245, 497
AcoI	YGGCCR	1 cut(s)	756
AcsI	RAATTY	2 cut(s)	434, 716
AcuI	CTGAAG	1 cut(s)	377
AcyI	GRCGYC	1 cut(s)	44
AfaI	GTAC	1 cut(s)	572
AfeI	AGCGCT	2 cut(s)	171, 686
AgsI	TTSAA	3 cut(s)	271, 568, 710
AjnI	CCWGG	1 cut(s)	584
AluBI	AGCT	5 cut(s)	56, 136, 323, 361, 443
AluI	AGCT	5 cut(s)	56, 136, 323, 361, 443
Alw26I	GTCTC	1 cut(s)	230
AlwNI	CAGNNNCTG	1 cut(s)	473
Ama87I	CYCGRG	1 cut(s)	173
Aor51HI	AGCGCT	2 cut(s)	171, 686
AoxI	GGCC	4 cut(s)	395, 582, 700, 756
ApeKI	GCWGC	4 cut(s)	50, 53, 248, 440
ApoI	RAATTY	2 cut(s)	434, 716
ArsI	GACNNNNNNTTYG	2 cut(s)	321, 353
AspLEI	GCGC	4 cut(s)	6, 40, 172, 687
AspS9I	GGNCC	2 cut(s)	395, 701
AsuII	TTCGAA	1 cut(s)	153
AvaI	CYCGRG	1 cut(s)	173
BaeGI	GKGCMC	1 cut(s)	212
BalI	TGGCCA	1 cut(s)	758
BanI	GGYRCC	1 cut(s)	207
BbvI	GCAGC	4 cut(s)	62, 65, 235, 452
BccI	CCATC	2 cut(s)	335, 773
BceAI	ACGGC	1 cut(s)	715
BciT130I	CCWGG	1 cut(s)	586
BciVI	GTATCC	1 cut(s)	670
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	1 cut(s)	320
BfoI	RGCGCY	3 cut(s)	41, 173, 688
BfuI	GTATCC	1 cut(s)	670
BisI	GCNGC	8 cut(s)	7, 51, 54, 69, 246, 249, 441, 498
BlsI	GCNGC	8 cut(s)	8, 52, 55, 70, 247, 250, 442, 499
Bme1390I	CCNGG	1 cut(s)	586
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	2 cut(s)	395, 701
BmiI	GGNNCC	3 cut(s)	209, 648, 703
BmrFI	CCNGG	1 cut(s)	586
BmsI	GCATC	2 cut(s)	246, 289
BplI	GAGNNNNNCTC	4 cut(s)	214, 246, 593, 625
BpmI	CTGGAG	2 cut(s)	152, 848
Bpu14I	TTCGAA	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	413
BsaBI	GATNNNNATC	1 cut(s)	345
BsaHI	GRCGYC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	203, 398
Bse8I	GATNNNNATC	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	586
BseDI	CCNNGG	2 cut(s)	203, 398
BseGI	GGATG	4 cut(s)	622, 667, 838, 844
BseJI	GATNNNNATC	1 cut(s)	345
BseMII	CTCAG	2 cut(s)	248, 603
BseRI	GAGGAG	1 cut(s)	222
BseSI	GKGCMC	1 cut(s)	212
BseXI	GCAGC	4 cut(s)	62, 65, 235, 452
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	4 cut(s)	397, 584, 702, 758
BshNI	GGYRCC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	173
BslFI	GGGAC	2 cut(s)	136, 362
BsmAI	GTCTC	1 cut(s)	230
BsmFI	GGGAC	2 cut(s)	136, 362
BsnI	GGCC	4 cut(s)	397, 584, 702, 758
BsoBI	CYCGRG	1 cut(s)	173
Bsp119I	TTCGAA	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp19I	CCATGG	1 cut(s)	203
BspACI	CCGC	4 cut(s)	6, 68, 245, 497
BspANI	GGCC	4 cut(s)	397, 584, 702, 758
BspCNI	CTCAG	2 cut(s)	247, 604
BspFNI	CGCG	1 cut(s)	6
BspLI	GGNNCC	3 cut(s)	209, 648, 703
BspT104I	TTCGAA	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	207
BsrBI	CCGCTC	1 cut(s)	497
BssECI	CCNNGG	2 cut(s)	203, 398
BssNI	GRCGYC	1 cut(s)	44
BssT1I	CCWWGG	2 cut(s)	203, 398
Bst2UI	CCWGG	1 cut(s)	586
Bst4CI	ACNGT	2 cut(s)	25, 127
Bst6I	CTCTTC	1 cut(s)	705
BstACI	GRCGYC	1 cut(s)	44
BstBI	TTCGAA	1 cut(s)	153
BstC8I	GCNNGC	3 cut(s)	261, 325, 502
BstDEI	CTNAG	3 cut(s)	234, 555, 612
BstDSI	CCRYGG	1 cut(s)	203
BstF5I	GGATG	4 cut(s)	622, 667, 838, 844
BstFNI	CGCG	1 cut(s)	6
BstH2I	RGCGCY	3 cut(s)	41, 173, 688
BstHHI	GCGC	4 cut(s)	6, 40, 172, 687
BstMAI	GTCTC	1 cut(s)	230
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 216, 684
BstNI	CCWGG	1 cut(s)	586
BstSCI	CCNGG	1 cut(s)	584
BstSLI	GKGCMC	1 cut(s)	212
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	4 cut(s)	62, 65, 235, 452
BsuI	GTATCC	1 cut(s)	670
BsuRI	GGCC	4 cut(s)	397, 584, 702, 758
BtgI	CCRYGG	1 cut(s)	203
BtgZI	GCGATG	1 cut(s)	693
BtsCI	GGATG	4 cut(s)	622, 667, 838, 844
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	3 cut(s)	261, 325, 502
CaiI	CAGNNNCTG	1 cut(s)	473
CfoI	GCGC	4 cut(s)	6, 40, 172, 687
Cfr13I	GGNCC	2 cut(s)	395, 701
Csp6I	GTAC	1 cut(s)	571
CviAII	CATG	6 cut(s)	10, 204, 371, 643, 760, 773
CviQI	GTAC	1 cut(s)	571
DdeI	CTNAG	3 cut(s)	234, 555, 612
EaeI	YGGCCR	1 cut(s)	756
Eam1104I	CTCTTC	1 cut(s)	705
EarI	CTCTTC	1 cut(s)	705
Eco130I	CCWWGG	2 cut(s)	203, 398
Eco147I	AGGCCT	1 cut(s)	584
Eco32I	GATATC	2 cut(s)	347, 552
Eco47III	AGCGCT	2 cut(s)	171, 686
Eco57I	CTGAAG	1 cut(s)	377
Eco88I	CYCGRG	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	584
EcoRV	GATATC	2 cut(s)	347, 552
EcoT14I	CCWWGG	2 cut(s)	203, 398
ErhI	CCWWGG	2 cut(s)	203, 398
FaeI	CATG	6 cut(s)	13, 207, 374, 646, 763, 776
FaqI	GGGAC	2 cut(s)	136, 362
FatI	CATG	6 cut(s)	9, 203, 370, 642, 759, 772
FblI	GTMKAC	1 cut(s)	311
Fnu4HI	GCNGC	8 cut(s)	7, 51, 54, 69, 246, 249, 441, 498
FokI	GGATG	4 cut(s)	629, 654, 845, 851
Fsp4HI	GCNGC	8 cut(s)	7, 51, 54, 69, 246, 249, 441, 498
FspBI	CTAG	1 cut(s)	320
GlaI	GCGC	4 cut(s)	5, 39, 171, 686
GluI	GCNGC	8 cut(s)	7, 51, 54, 69, 246, 249, 441, 498
GsuI	CTGGAG	2 cut(s)	152, 848
HaeII	RGCGCY	3 cut(s)	41, 173, 688
HaeIII	GGCC	4 cut(s)	397, 584, 702, 758
HhaI	GCGC	4 cut(s)	6, 40, 172, 687
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	6 cut(s)	13, 207, 374, 646, 763, 776
Hin6I	GCGC	4 cut(s)	4, 38, 170, 685
HinP1I	GCGC	4 cut(s)	4, 38, 170, 685
HincII	GTYRAC	1 cut(s)	819
HindII	GTYRAC	1 cut(s)	819
HinfI	GANTC	7 cut(s)	143, 155, 223, 336, 464, 470, 542
Hpy166II	GTNNAC	3 cut(s)	190, 312, 819
Hpy188I	TCNGA	2 cut(s)	469, 613
Hpy188III	TCNNGA	3 cut(s)	430, 446, 827
Hpy8I	GTNNAC	3 cut(s)	190, 312, 819
Hpy99I	CGWCG	7 cut(s)	88, 91, 94, 97, 100, 103, 163
HpyAV	CCTTC	2 cut(s)	574, 674
HpyCH4III	ACNGT	2 cut(s)	25, 127
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	3 cut(s)	327, 440, 599
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 216, 684
HpyF3I	CTNAG	3 cut(s)	234, 555, 612
HpySE526I	ACGT	1 cut(s)	44
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	6 cut(s)	13, 207, 374, 646, 763, 776
HspAI	GCGC	4 cut(s)	4, 38, 170, 685
LmnI	GCTCC	3 cut(s)	133, 448, 494
LpnPI	CCDG	9 cut(s)	19, 116, 122, 486, 571, 598, 641, 663, 812
Lsp1109I	GCAGC	4 cut(s)	62, 65, 235, 452
LweI	GCATC	2 cut(s)	246, 289
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	2 cut(s)	451, 747
MbiI	CCGCTC	1 cut(s)	497
MboII	GAAGA	4 cut(s)	283, 502, 722, 854
MhlI	GDGCHC	1 cut(s)	212
MlsI	TGGCCA	1 cut(s)	758
MluCI	AATT	4 cut(s)	434, 716, 810, 822
MluNI	TGGCCA	1 cut(s)	758
MlyI	GAGTC	4 cut(s)	232, 345, 464, 551
MmeI	TCCRAC	3 cut(s)	171, 219, 472
MnlI	CCTC	7 cut(s)	243, 595, 607, 706, 718, 823, 829
Mox20I	TGGCCA	1 cut(s)	758
MscI	TGGCCA	1 cut(s)	758
MseI	TTAA	2 cut(s)	20, 782
Msp20I	TGGCCA	1 cut(s)	758
MspR9I	CCNGG	1 cut(s)	586
MvaI	CCWGG	1 cut(s)	586
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	3 cut(s)	15, 216, 684
NcoI	CCATGG	1 cut(s)	203
NlaIII	CATG	6 cut(s)	13, 207, 374, 646, 763, 776
NlaIV	GGNNCC	3 cut(s)	209, 648, 703
NspV	TTCGAA	1 cut(s)	153
PaeR7I	CTCGAG	1 cut(s)	173
PceI	AGGCCT	1 cut(s)	584
PcsI	WCGNNNNNNNCGW	5 cut(s)	83, 89, 92, 95, 98
PfeI	GAWTC	3 cut(s)	143, 155, 464
PkrI	GCNGC	8 cut(s)	8, 52, 55, 70, 247, 250, 442, 499
PleI	GAGTC	4 cut(s)	231, 344, 464, 550
PpsI	GAGTC	4 cut(s)	231, 344, 464, 550
Psp6I	CCWGG	1 cut(s)	584
PspGI	CCWGG	1 cut(s)	584
PspN4I	GGNNCC	3 cut(s)	209, 648, 703
PspPI	GGNCC	2 cut(s)	395, 701
PspXI	VCTCGAGB	1 cut(s)	173
PstNI	CAGNNNCTG	1 cut(s)	473
RsaI	GTAC	1 cut(s)	572
RsaNI	GTAC	1 cut(s)	571
SaqAI	TTAA	2 cut(s)	20, 782
SatI	GCNGC	8 cut(s)	7, 51, 54, 69, 246, 249, 441, 498
Sau96I	GGNCC	2 cut(s)	395, 701
SchI	GAGTC	4 cut(s)	232, 345, 464, 551
ScrFI	CCNGG	1 cut(s)	586
SduI	GDGCHC	1 cut(s)	212
SetI	ASST	7 cut(s)	47, 58, 138, 325, 363, 445, 754
SfaNI	GCATC	2 cut(s)	246, 289
Sfr274I	CTCGAG	1 cut(s)	173
SfuI	TTCGAA	1 cut(s)	153
SlaI	CTCGAG	1 cut(s)	173
SmlI	CTYRAG	2 cut(s)	173, 428
SmoI	CTYRAG	2 cut(s)	173, 428
Sse9I	AATT	4 cut(s)	434, 716, 810, 822
SseBI	AGGCCT	1 cut(s)	584
SsiI	CCGC	4 cut(s)	6, 68, 245, 497
SspMI	CTAG	1 cut(s)	320
StuI	AGGCCT	1 cut(s)	584
StyD4I	CCNGG	1 cut(s)	584
StyI	CCWWGG	2 cut(s)	203, 398
TaaI	ACNGT	2 cut(s)	25, 127
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	4 cut(s)	153, 158, 174, 339
TasI	AATT	4 cut(s)	434, 716, 810, 822
TatI	WGTACW	1 cut(s)	570
TauI	GCSGC	4 cut(s)	9, 71, 248, 500
TfiI	GAWTC	3 cut(s)	143, 155, 464
Tru1I	TTAA	2 cut(s)	20, 782
Tru9I	TTAA	2 cut(s)	20, 782
TscAI	CASTG	1 cut(s)	78
TseI	GCWGC	4 cut(s)	50, 53, 248, 440
TspDTI	ATGAA	5 cut(s)	255, 656, 721, 816, 855
TspGWI	ACGGA	2 cut(s)	348, 535
TspRI	CASTG	1 cut(s)	78
XapI	RAATTY	2 cut(s)	434, 716
XhoI	CTCGAG	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	311
XspI	CTAG	1 cut(s)	320
ZraI	GACGTC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.