Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006094

Physical Location & Seq

Genomic Coordinates Forward (+)

18843463 .. 18848234

Gene Structure 4772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00233030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGCGCGGCTTAACGGTGTGGTTCTGGGCGCTGACGTCAGCAGCAGCTATATTGGGGGCGGCAGTGTCGTCGTCGTCGTGGGTGGCGGACGGGACGGTGTTGGAGCTGGACGATTCCAACTTCGAATCGGCGATTTCAACGCTGGACTTGGTCTTGGTTGACTTCCACGCCCCCTGGTGCGGCCACTGCAAGCGTCTCTCTCCTCAGTTGGATGCGGCTGCGCCGGTGCTTGCTTCATTGAAGAACCCAATTGTGATAGCAAAAGTTAATGCTGACAAGTATACATCTTTAGCTCGCAAATATGGAGTCGATGGATATCCTACATTGAAGCTCTTTATACATGGTGTCCCCCAAGAGTATAAAGGGCCGAGGAAAGCTGATTTGCTTGTTAGTTATCTCAAGAAATTTGCAGCTCCCGATGTTACCCTACTTGATTCAGACTCTGCTGTTGCTGATTTTGTTGGAGCAGCAGGCACATTCTTCCCTATTTATGTTGGTTTTGGCTTGGATGAGTCCGTGATATCTCAGTTGGGATTGAAGTACAAAAGGAAGGCCTGGTTTTCTGTTGCAAAGGATTTCTCTGAGGATCTAATGATGTTGTATGATTTTGACAAGGTTCCTGCTTTGGTATCCCTTCATCCAAGTTATGATGAGCGCCACGTCTTTTACGGCCCCTTTGAAGAGGAATTTTTGGAAGATTTCATAAAACAAAGTTTGTTACCTTTGGCCATGCCCATCAACTATGACACATTAAAATCATTGGAGGATGATGAAAGAAAAATTGTGTTGACAATTGTGGAGGATGAGGATGAAGAGAAGTCAAAGAACTTGATCAAGATTTTGAAATCTGCTGCATCCGCTAATCGAGACCTTGTATTTGGTTATGTCGGGATCAAACAATGGGAAGATTTTGCTGAAACATTTGGAGCGAACAAGAAGACAAAATTACCGAAAATGGTTGTCTGGGATCGAATGGAGGAGTACTTAACAGTCAACGGCTCAGAAAGCATTGACGGGGAAGATCAGGCATCTCAAGTCTCGCAGTTTCTTGAAGGATATAAGGAAGGAAGAACAATTAAAGAAAAAGTTGGTGGCAGTGTGTCGCTTACTGCCTTTATATCTTCATTTATTGGGATTGGAACTGTGTATATATTAGTTTTTGTGGTAGCGACGATAATTCTTATTAGAAAAGCCACTGAGGAAGAACCTCTCAGGGTTGGTAGGGGAGATCAAGTTGATCATGCTACAAGCTCTACTGGCGCCGCTGAAAGCAGTGAGCATAAAGCTGGAGAAAAGGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005911 GO:0006457 GO:0006950 GO:0008150 GO:0009505 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0030054 GO:0030312 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0071944 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

434

Amino Acids

47.91

Weight (kDa)

4.91

Isoelectric Point (pI)

32.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	33 - 135	1.6e-25	Thioredoxin
Thioredoxin_6	PF13848	193 - 350	4.8e-11	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35620
fragaria_vesca	FvH4_5g30970 FvH4_5g30970
malus_domestica	MD08G1220700.v1.1 MD09G1249700.v1.1 MD15G1411400.v1.1
prunus_persica	Prupe.1G557400_v2.0.a1
pyrus_communis	pycom08g19150 pycom15g36620
rosa_chinensis	RchiOBHm_Chr7g0226321 RchiOBHm_Chr7g0226361
rosa_laevigata	RLG00000001746 RLG00000001751
rosa_multiflora	Rmu_sc0001044.1_g000026 Rmu_sc0004322.1_g000024 Rmu_sc0004426.1_g000003 Rmu_sc0004426.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233030 Rroxscaffold_5G00366610
rosa_rugosa	Rorug07G0236600
rosa_samantha	Rh7AG383600 Rh7BG370400 Rh7CG403200 Rh7DG382000
rosa_wichuraiana	Rw7G032130 Rw7G032150 Rw7G032210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	38
AccB1I	GGYRCC	1 cut(s)	1259
AccI	GTMKAC	1 cut(s)	281
AccII	CGCG	1 cut(s)	6
AciI	CCGC	7 cut(s)	6, 59, 86, 180, 215, 858, 1263
AclWI	GGATC	3 cut(s)	594, 899, 975
AcoI	YGGCCR	2 cut(s)	181, 726
AcsI	RAATTY	2 cut(s)	404, 686
AcyI	GRCGYC	2 cut(s)	35, 1260
AfaI	GTAC	2 cut(s)	542, 983
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgsI	TTSAA	7 cut(s)	138, 241, 328, 538, 680, 844, 1052
AjiI	CACGTC	1 cut(s)	661
AjnI	CCWGG	2 cut(s)	173, 554
AluBI	AGCT	8 cut(s)	47, 106, 293, 331, 377, 413, 1251, 1286
AluI	AGCT	8 cut(s)	47, 106, 293, 331, 377, 413, 1251, 1286
Alw26I	GTCTC	3 cut(s)	200, 861, 1042
AlwI	GGATC	3 cut(s)	594, 899, 975
AlwNI	CAGNNNCTG	1 cut(s)	443
AoxI	GGCC	5 cut(s)	181, 365, 552, 670, 726
ApeKI	GCWGC	6 cut(s)	41, 44, 218, 410, 467, 851
ApoI	RAATTY	2 cut(s)	404, 686
ArsI	GACNNNNNNTTYG	4 cut(s)	291, 323, 860, 892
AspLEI	GCGC	5 cut(s)	6, 31, 223, 657, 1262
AspS9I	GGNCC	2 cut(s)	365, 671
AsuII	TTCGAA	1 cut(s)	123
BalI	TGGCCA	1 cut(s)	728
BanI	GGYRCC	1 cut(s)	1259
BbsI	GAAGAC	1 cut(s)	944
BbvI	GCAGC	6 cut(s)	53, 56, 205, 422, 479, 838
BccI	CCATC	2 cut(s)	305, 743
BceAI	ACGGC	2 cut(s)	685, 1012
BcgI	CGANNNNNNTGC	2 cut(s)	51, 85
BciT130I	CCWGG	2 cut(s)	175, 556
BciVI	GTATCC	1 cut(s)	640
BclI	TGATCA	2 cut(s)	831, 1237
BcoDI	GTCTC	3 cut(s)	200, 861, 1042
BfoI	RGCGCY	3 cut(s)	32, 658, 1263
BfuI	GTATCC	1 cut(s)	640
BmcAI	AGTACT	1 cut(s)	983
Bme1390I	CCNGG	2 cut(s)	175, 556
BmgBI	CACGTC	1 cut(s)	661
BmgT120I	GGNCC	2 cut(s)	365, 671
BmiI	GGNNCC	3 cut(s)	618, 673, 1261
BmrFI	CCNGG	2 cut(s)	175, 556
BmsI	GCATC	3 cut(s)	202, 863, 1037
BpiI	GAAGAC	1 cut(s)	944
Bpu14I	TTCGAA	1 cut(s)	123
BpuEI	CTTGAG	2 cut(s)	383, 1017
BsaBI	GATNNNNATC	1 cut(s)	315
BsaHI	GRCGYC	2 cut(s)	35, 1260
BsaI	GGTCTC	1 cut(s)	861
BsaJI	CCNNGG	2 cut(s)	173, 368
BsaXI	ACNNNNNCTCC	2 cut(s)	1218, 1248
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse118I	RCCGGY	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	1261
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	2 cut(s)	175, 556
BseDI	CCNNGG	2 cut(s)	173, 368
BseGI	GGATG	7 cut(s)	217, 514, 637, 772, 808, 814, 854
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMII	CTCAG	6 cut(s)	218, 539, 573, 1014, 1188, 1225
BseNI	ACTGG	1 cut(s)	1261
BseRI	GAGGAG	2 cut(s)	192, 992
BseXI	GCAGC	6 cut(s)	53, 56, 205, 422, 479, 838
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	5 cut(s)	183, 367, 554, 672, 728
BshNI	GGYRCC	1 cut(s)	1259
BsiSI	CCGG	1 cut(s)	224
BslFI	GGGAC	2 cut(s)	106, 332
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	3 cut(s)	200, 861, 1042
BsmBI	CGTCTC	1 cut(s)	200
BsmFI	GGGAC	2 cut(s)	106, 332
BsnI	GGCC	5 cut(s)	183, 367, 554, 672, 728
Bso31I	GGTCTC	1 cut(s)	861
Bsp119I	TTCGAA	1 cut(s)	123
Bsp143I	GATC	7 cut(s)	586, 831, 891, 967, 1021, 1228, 1237
BspACI	CCGC	7 cut(s)	6, 59, 86, 180, 215, 858, 1263
BspANI	GGCC	5 cut(s)	183, 367, 554, 672, 728
BspCNI	CTCAG	6 cut(s)	217, 538, 574, 1013, 1189, 1224
BspFNI	CGCG	1 cut(s)	6
BspLI	GGNNCC	3 cut(s)	618, 673, 1261
BspPI	GGATC	3 cut(s)	594, 899, 975
BspT104I	TTCGAA	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	1259
BspTNI	GGTCTC	1 cut(s)	861
BsrFI	RCCGGY	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	1261
BssAI	RCCGGY	1 cut(s)	223
BssECI	CCNNGG	2 cut(s)	173, 368
BssMI	GATC	7 cut(s)	586, 831, 891, 967, 1021, 1228, 1237
BssNAI	GTATAC	1 cut(s)	282
BssNI	GRCGYC	2 cut(s)	35, 1260
Bst1107I	GTATAC	1 cut(s)	282
Bst2UI	CCWGG	2 cut(s)	175, 556
Bst4CI	ACNGT	4 cut(s)	16, 97, 991, 1144
Bst6I	CTCTTC	2 cut(s)	675, 807
BstACI	GRCGYC	2 cut(s)	35, 1260
BstBI	TTCGAA	1 cut(s)	123
BstC8I	GCNNGC	4 cut(s)	191, 231, 295, 472
BstDEI	CTNAG	6 cut(s)	204, 525, 582, 1000, 1197, 1211
BstF5I	GGATG	7 cut(s)	217, 514, 637, 772, 808, 814, 854
BstFNI	CGCG	1 cut(s)	6
BstH2I	RGCGCY	3 cut(s)	32, 658, 1263
BstHHI	GCGC	5 cut(s)	6, 31, 223, 657, 1262
BstKTI	GATC	7 cut(s)	589, 834, 894, 970, 1024, 1231, 1240
BstMAI	GTCTC	3 cut(s)	200, 861, 1042
BstMBI	GATC	7 cut(s)	586, 831, 891, 967, 1021, 1228, 1237
BstMWI	GCNNNNNNNGC	4 cut(s)	186, 857, 1005, 1257
BstNI	CCWGG	2 cut(s)	175, 556
BstSCI	CCNGG	2 cut(s)	173, 554
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	6 cut(s)	53, 56, 205, 422, 479, 838
BstV2I	GAAGAC	1 cut(s)	944
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
BstZ17I	GTATAC	1 cut(s)	282
BsuI	GTATCC	1 cut(s)	640
BsuRI	GGCC	5 cut(s)	183, 367, 554, 672, 728
BtrI	CACGTC	1 cut(s)	661
BtsCI	GGATG	7 cut(s)	217, 514, 637, 772, 808, 814, 854
BtsI	GCAGTG	4 cut(s)	69, 184, 1102, 1279
BtsIMutI	CAGTG	5 cut(s)	69, 184, 1102, 1194, 1279
Cac8I	GCNNGC	4 cut(s)	191, 231, 295, 472
CaiI	CAGNNNCTG	1 cut(s)	443
CfoI	GCGC	5 cut(s)	6, 31, 223, 657, 1262
Cfr10I	RCCGGY	1 cut(s)	223
Cfr13I	GGNCC	2 cut(s)	365, 671
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	2 cut(s)	541, 982
CviAII	CATG	3 cut(s)	341, 730, 1241
CviQI	GTAC	2 cut(s)	541, 982
DdeI	CTNAG	6 cut(s)	204, 525, 582, 1000, 1197, 1211
DinI	GGCGCC	1 cut(s)	1261
DpnI	GATC	7 cut(s)	588, 833, 893, 969, 1023, 1230, 1239
DpnII	GATC	7 cut(s)	586, 831, 891, 967, 1021, 1228, 1237
EaeI	YGGCCR	2 cut(s)	181, 726
Eam1104I	CTCTTC	2 cut(s)	675, 807
EarI	CTCTTC	2 cut(s)	675, 807
EciI	GGCGGA	1 cut(s)	101
Eco147I	AGGCCT	1 cut(s)	554
Eco31I	GGTCTC	1 cut(s)	861
Eco32I	GATATC	2 cut(s)	317, 522
EcoRII	CCWGG	2 cut(s)	173, 554
EcoRV	GATATC	2 cut(s)	317, 522
EgeI	GGCGCC	1 cut(s)	1261
EheI	GGCGCC	1 cut(s)	1261
Esp3I	CGTCTC	1 cut(s)	200
FaeI	CATG	3 cut(s)	344, 733, 1244
FaqI	GGGAC	2 cut(s)	106, 332
FatI	CATG	3 cut(s)	340, 729, 1240
FbaI	TGATCA	2 cut(s)	831, 1237
FblI	GTMKAC	1 cut(s)	281
FokI	GGATG	7 cut(s)	224, 521, 624, 779, 815, 821, 841
GlaI	GCGC	5 cut(s)	5, 30, 222, 656, 1261
HaeII	RGCGCY	3 cut(s)	32, 658, 1263
HaeIII	GGCC	5 cut(s)	183, 367, 554, 672, 728
HapII	CCGG	1 cut(s)	224
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	5 cut(s)	6, 31, 223, 657, 1262
Hin1I	GRCGYC	2 cut(s)	35, 1260
Hin1II	CATG	3 cut(s)	344, 733, 1244
Hin6I	GCGC	5 cut(s)	4, 29, 221, 655, 1260
HinP1I	GCGC	5 cut(s)	4, 29, 221, 655, 1260
HincII	GTYRAC	3 cut(s)	160, 789, 994
HindII	GTYRAC	3 cut(s)	160, 789, 994
HinfI	GANTC	6 cut(s)	113, 125, 306, 434, 440, 512
HpaII	CCGG	1 cut(s)	224
Hpy166II	GTNNAC	4 cut(s)	160, 282, 789, 994
Hpy188I	TCNGA	3 cut(s)	439, 583, 1003
Hpy188III	TCNNGA	6 cut(s)	400, 416, 835, 866, 889, 1049
Hpy8I	GTNNAC	4 cut(s)	160, 282, 789, 994
Hpy99I	CGWCG	4 cut(s)	73, 76, 79, 1174
HpyAV	CCTTC	4 cut(s)	544, 644, 1046, 1058
HpyCH4III	ACNGT	4 cut(s)	16, 97, 991, 1144
HpyCH4IV	ACGT	2 cut(s)	35, 660
HpyCH4V	TGCA	4 cut(s)	189, 410, 569, 854
HpyF10VI	GCNNNNNNNGC	4 cut(s)	186, 857, 1005, 1257
HpyF3I	CTNAG	6 cut(s)	204, 525, 582, 1000, 1197, 1211
HpySE526I	ACGT	2 cut(s)	35, 660
Hsp92I	GRCGYC	2 cut(s)	35, 1260
Hsp92II	CATG	3 cut(s)	344, 733, 1244
HspAI	GCGC	5 cut(s)	4, 29, 221, 655, 1260
KasI	GGCGCC	1 cut(s)	1259
Ksp22I	TGATCA	2 cut(s)	831, 1237
Kzo9I	GATC	7 cut(s)	586, 831, 891, 967, 1021, 1228, 1237
LmnI	GCTCC	4 cut(s)	103, 418, 464, 926
Lsp1109I	GCAGC	6 cut(s)	53, 56, 205, 422, 479, 838
LweI	GCATC	3 cut(s)	202, 863, 1037
MaeII	ACGT	2 cut(s)	35, 660
MaeIII	GTNAC	2 cut(s)	421, 717
MalI	GATC	7 cut(s)	588, 833, 893, 969, 1023, 1230, 1239
MboI	GATC	7 cut(s)	586, 831, 891, 967, 1021, 1228, 1237
MfeI	CAATTG	2 cut(s)	249, 792
MflI	RGATCY	1 cut(s)	586
MlsI	TGGCCA	1 cut(s)	728
MluCI	AATT	8 cut(s)	249, 404, 686, 780, 792, 944, 1074, 1176
MluNI	TGGCCA	1 cut(s)	728
Mly113I	GGCGCC	1 cut(s)	1260
MlyI	GAGTC	3 cut(s)	315, 434, 521
MmeI	TCCRAC	4 cut(s)	81, 141, 189, 442
Mox20I	TGGCCA	1 cut(s)	728
MscI	TGGCCA	1 cut(s)	728
MseI	TTAA	5 cut(s)	11, 267, 752, 986, 1077
Msp20I	TGGCCA	1 cut(s)	728
MspA1I	CMGCKG	1 cut(s)	1265
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	2 cut(s)	175, 556
MunI	CAATTG	2 cut(s)	249, 792
MvaI	CCWGG	2 cut(s)	175, 556
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	4 cut(s)	186, 857, 1005, 1257
NarI	GGCGCC	1 cut(s)	1260
NdeII	GATC	7 cut(s)	586, 831, 891, 967, 1021, 1228, 1237
NlaIII	CATG	3 cut(s)	344, 733, 1244
NlaIV	GGNNCC	3 cut(s)	618, 673, 1261
NmeAIII	GCCGAG	1 cut(s)	393
NspV	TTCGAA	1 cut(s)	123
PceI	AGGCCT	1 cut(s)	554
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PfeI	GAWTC	3 cut(s)	113, 125, 434
PflFI	GACNNNGTC	1 cut(s)	149
PleI	GAGTC	3 cut(s)	314, 434, 520
PluTI	GGCGCC	1 cut(s)	1263
PpsI	GAGTC	3 cut(s)	314, 434, 520
Psp6I	CCWGG	2 cut(s)	173, 554
PspGI	CCWGG	2 cut(s)	173, 554
PspN4I	GGNNCC	3 cut(s)	618, 673, 1261
PspPI	GGNCC	2 cut(s)	365, 671
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	586
PsyI	GACNNNGTC	1 cut(s)	149
RsaI	GTAC	2 cut(s)	542, 983
RsaNI	GTAC	2 cut(s)	541, 982
SaqAI	TTAA	5 cut(s)	11, 267, 752, 986, 1077
Sau3AI	GATC	7 cut(s)	586, 831, 891, 967, 1021, 1228, 1237
Sau96I	GGNCC	2 cut(s)	365, 671
ScaI	AGTACT	1 cut(s)	983
SchI	GAGTC	3 cut(s)	315, 434, 521
ScrFI	CCNGG	2 cut(s)	175, 556
SfaNI	GCATC	3 cut(s)	202, 863, 1037
SfoI	GGCGCC	1 cut(s)	1261
SfuI	TTCGAA	1 cut(s)	123
SgrAI	CRCCGGYG	1 cut(s)	223
SmlI	CTYRAG	2 cut(s)	398, 1032
SmoI	CTYRAG	2 cut(s)	398, 1032
Sse9I	AATT	8 cut(s)	249, 404, 686, 780, 792, 944, 1074, 1176
SseBI	AGGCCT	1 cut(s)	554
SsiI	CCGC	7 cut(s)	6, 59, 86, 180, 215, 858, 1263
SspDI	GGCGCC	1 cut(s)	1259
StuI	AGGCCT	1 cut(s)	554
StyD4I	CCNGG	2 cut(s)	173, 554
TaaI	ACNGT	4 cut(s)	16, 97, 991, 1144
TaiI	ACGT	2 cut(s)	38, 663
TaqI	TCGA	4 cut(s)	123, 309, 865, 970
TasI	AATT	8 cut(s)	249, 404, 686, 780, 792, 944, 1074, 1176
TatI	WGTACW	2 cut(s)	540, 981
TauI	GCSGC	5 cut(s)	9, 62, 183, 218, 1265
TfiI	GAWTC	3 cut(s)	113, 125, 434
Tru1I	TTAA	5 cut(s)	11, 267, 752, 986, 1077
Tru9I	TTAA	5 cut(s)	11, 267, 752, 986, 1077
TscAI	CASTG	5 cut(s)	69, 191, 1102, 1201, 1279
TseI	GCWGC	6 cut(s)	41, 44, 218, 410, 467, 851
TspDTI	ATGAA	6 cut(s)	225, 626, 691, 786, 825, 1113
TspGWI	ACGGA	1 cut(s)	505
TspRI	CASTG	5 cut(s)	69, 191, 1102, 1201, 1279
Tth111I	GACNNNGTC	1 cut(s)	149
XapI	RAATTY	2 cut(s)	404, 686
XmiI	GTMKAC	1 cut(s)	281
ZraI	GACGTC	1 cut(s)	36
ZrmI	AGTACT	1 cut(s)	983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.