Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0006094

Physical Location & Seq

Genomic Coordinates Reverse (-)

46394885 .. 46399857

Gene Structure 4973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G032130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGCGCGGCTTAACGGTGTGGTTCTGGGCGCTGACGTCAGCAGCAGCCGCTATATTGGGGGCGTGGGCGTCATCGTCATCGTCATCGTCATCGTCGTGGGTGGCGGACGGGACGGTGCTGGAGCTGGACGATTCCAACTTCGAATCGGCGATTTCAGCGCTGGACTTGGTCTTGGTGGACTTCCACGCCCCCTGGTGCGGCCACTGCAAGCGTCTCTCTCCTCAGTTGGATGCGGCTGCGCCGGTGCTTGCTTCATTGAAGAACCCAATAGTGATAGCAAAAGTTAATGCTGACAAGTACACATCTCTAGCTCGCAAATATGGAGTCGATGGATATCCTACGCTGAAGCTGTTTATACATGGTGTCCCCCAAGAGTATAAAGGGCCGAGGAAAGCCGATTTGCTTGTTAGTTATCTCAAGAAATTTGCAGCTCCCGATGTTACCCTACTTGATTCAGACTCTGCTGTTGCTGACTTTGTTGGAGCAGCGGGCACATTCTTCCCTATTTATGTTGGTTTTGGCTTAGATGAGTCCCTGATATCTGCGTTGGGATTGAAGTACAAAAGGAAGGCCTGGTTTTCTGTTGCAAAGGATTTCTCGGAGGATCTAATGATGTTGTACGATTTTGACAAGGTTCCTGCCTTGGTATCCCTTCATCCAAGTTACGATGAGCGCCACGTCTTTTACGGCCCCTTTGAAGAGGAATTTTTGGAAGATTTCATAAAACAAAGTTTGTTACCTTTGGCCATACCCATCAACTATGACACATTAAAATCATTGGACGATGATGAAAGAAAAATTGTGTTGACAATTGTGGAGGATGAGGATGAAGAGAAGTCAAAGAACTTGATCAAGATTTTGAAATCTGCTGCATCCGCTAATCGAGACCTTGTATTTGGTTATGTCGGGATCAAACAATGGGAAGATTTTGCTGAAACATTCGGAGCGAACAAGAAGACAAAACTACCAAAAATGGTTGTTTGGGATCGAATGGAGGAGTACTTAACAGTCAACGGCTCAGAAAGTATTGACGGGGAAGATCAGGCATCTCAAGTCTCGCAGTTTCTTGAAGGATATAAGGAAGGAAGAACGATTAAAGAAAAAGTTGGTGGCAGTGTGTCGCTTACTGCCTTTATATCTTCATTTATTGGGATTGGAACTGTGTATATATTAGTTTTTGTGGTAGCGACGATAATTCTTATTAGAAAAGCCACTGAGGAAGAACCTCTCAGGGTTGGTAGGGGAGATAAGGTTGATCATGCTACAAGCTCTACTGCCGAGGCTGAAATCAGTGAGCATAAAGCTGGAGAAAAGGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005911 GO:0006457 GO:0006950 GO:0008150 GO:0009505 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0030054 GO:0030312 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0071944 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

440

Amino Acids

48.49

Weight (kDa)

4.91

Isoelectric Point (pI)

31.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	39 - 141	1.5e-25	Thioredoxin
Thioredoxin_6	PF13848	199 - 356	2e-10	Thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35620
fragaria_vesca	FvH4_5g30970 FvH4_5g30970
malus_domestica	MD08G1220700.v1.1 MD09G1249700.v1.1 MD15G1411400.v1.1
prunus_persica	Prupe.1G557400_v2.0.a1
pyrus_communis	pycom08g19150 pycom15g36620
rosa_chinensis	RchiOBHm_Chr7g0226321 RchiOBHm_Chr7g0226361
rosa_laevigata	RLG00000001746 RLG00000001751
rosa_multiflora	Rmu_sc0001044.1_g000026 Rmu_sc0004322.1_g000024 Rmu_sc0004426.1_g000003 Rmu_sc0004426.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233030 Rroxscaffold_5G00366610
rosa_rugosa	Rorug07G0236600
rosa_samantha	Rh7AG383600 Rh7BG370400 Rh7CG403200 Rh7DG382000
rosa_wichuraiana	Rw7G032130 Rw7G032150 Rw7G032210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	38
AccII	CGCG	1 cut(s)	6
AciI	CCGC	7 cut(s)	6, 48, 104, 198, 233, 488, 876
AclWI	GGATC	3 cut(s)	612, 917, 993
AcoI	YGGCCR	2 cut(s)	199, 744
AcsI	RAATTY	2 cut(s)	422, 704
AcuI	CTGAAG	1 cut(s)	365
AcyI	GRCGYC	2 cut(s)	35, 68
AfaI	GTAC	4 cut(s)	299, 560, 620, 1001
AfeI	AGCGCT	1 cut(s)	159
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	5 cut(s)	259, 556, 698, 862, 1070
AjiI	CACGTC	1 cut(s)	679
AjnI	CCWGG	2 cut(s)	191, 572
AluBI	AGCT	6 cut(s)	124, 311, 349, 431, 1269, 1304
AluI	AGCT	6 cut(s)	124, 311, 349, 431, 1269, 1304
Alw26I	GTCTC	3 cut(s)	218, 879, 1060
AlwI	GGATC	3 cut(s)	612, 917, 993
AlwNI	CAGNNNCTG	1 cut(s)	461
Aor51HI	AGCGCT	1 cut(s)	159
AoxI	GGCC	5 cut(s)	199, 383, 570, 688, 744
ApeKI	GCWGC	6 cut(s)	41, 44, 236, 428, 485, 869
ApoI	RAATTY	2 cut(s)	422, 704
ArsI	GACNNNNNNTTYG	4 cut(s)	309, 341, 878, 910
AspLEI	GCGC	5 cut(s)	6, 31, 160, 241, 675
AspS9I	GGNCC	2 cut(s)	383, 689
AsuII	TTCGAA	1 cut(s)	141
BaeGI	GKGCMC	1 cut(s)	494
BalI	TGGCCA	1 cut(s)	746
BbsI	GAAGAC	1 cut(s)	962
BbvI	GCAGC	6 cut(s)	53, 56, 223, 440, 497, 856
BccI	CCATC	2 cut(s)	323, 761
BceAI	ACGGC	2 cut(s)	703, 1030
BciT130I	CCWGG	2 cut(s)	193, 574
BciVI	GTATCC	1 cut(s)	658
BclI	TGATCA	2 cut(s)	849, 1255
BcoDI	GTCTC	3 cut(s)	218, 879, 1060
BfaI	CTAG	1 cut(s)	308
BfoI	RGCGCY	3 cut(s)	32, 161, 676
BfuI	GTATCC	1 cut(s)	658
BmcAI	AGTACT	1 cut(s)	1001
Bme1390I	CCNGG	2 cut(s)	193, 574
BmgBI	CACGTC	1 cut(s)	679
BmgT120I	GGNCC	2 cut(s)	383, 689
BmiI	GGNNCC	2 cut(s)	636, 691
BmrFI	CCNGG	2 cut(s)	193, 574
BmsI	GCATC	3 cut(s)	220, 881, 1055
BpiI	GAAGAC	1 cut(s)	962
BpmI	CTGGAG	1 cut(s)	140
Bpu14I	TTCGAA	1 cut(s)	141
BpuEI	CTTGAG	2 cut(s)	401, 1035
BsaBI	GATNNNNATC	1 cut(s)	333
BsaHI	GRCGYC	2 cut(s)	35, 68
BsaI	GGTCTC	1 cut(s)	879
BsaJI	CCNNGG	4 cut(s)	191, 386, 642, 1278
BsaXI	ACNNNNNCTCC	2 cut(s)	1236, 1266
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse118I	RCCGGY	1 cut(s)	241
Bse8I	GATNNNNATC	1 cut(s)	333
BseBI	CCWGG	2 cut(s)	193, 574
BseDI	CCNNGG	4 cut(s)	191, 386, 642, 1278
BseGI	GGATG	5 cut(s)	235, 655, 826, 832, 872
BseJI	GATNNNNATC	1 cut(s)	333
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMII	CTCAG	4 cut(s)	236, 1032, 1206, 1243
BseRI	GAGGAG	2 cut(s)	210, 1010
BseSI	GKGCMC	1 cut(s)	494
BseXI	GCAGC	6 cut(s)	53, 56, 223, 440, 497, 856
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	5 cut(s)	201, 385, 572, 690, 746
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	3 cut(s)	124, 350, 517
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	3 cut(s)	218, 879, 1060
BsmBI	CGTCTC	1 cut(s)	218
BsmFI	GGGAC	3 cut(s)	124, 350, 517
BsnI	GGCC	5 cut(s)	201, 385, 572, 690, 746
Bso31I	GGTCTC	1 cut(s)	879
Bsp119I	TTCGAA	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	494
Bsp143I	GATC	6 cut(s)	604, 849, 909, 985, 1039, 1255
BspACI	CCGC	7 cut(s)	6, 48, 104, 198, 233, 488, 876
BspANI	GGCC	5 cut(s)	201, 385, 572, 690, 746
BspCNI	CTCAG	4 cut(s)	235, 1031, 1207, 1242
BspFNI	CGCG	1 cut(s)	6
BspLI	GGNNCC	2 cut(s)	636, 691
BspPI	GGATC	3 cut(s)	612, 917, 993
BspT104I	TTCGAA	1 cut(s)	141
BspTNI	GGTCTC	1 cut(s)	879
BsrFI	RCCGGY	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	4 cut(s)	191, 386, 642, 1278
BssMI	GATC	6 cut(s)	604, 849, 909, 985, 1039, 1255
BssNI	GRCGYC	2 cut(s)	35, 68
BssT1I	CCWWGG	1 cut(s)	642
Bst2UI	CCWGG	2 cut(s)	193, 574
Bst4CI	ACNGT	4 cut(s)	16, 115, 1009, 1162
Bst6I	CTCTTC	2 cut(s)	693, 825
BstACI	GRCGYC	2 cut(s)	35, 68
BstBI	TTCGAA	1 cut(s)	141
BstC8I	GCNNGC	4 cut(s)	209, 249, 313, 490
BstDEI	CTNAG	5 cut(s)	222, 523, 1018, 1215, 1229
BstF5I	GGATG	5 cut(s)	235, 655, 826, 832, 872
BstFNI	CGCG	1 cut(s)	6
BstH2I	RGCGCY	3 cut(s)	32, 161, 676
BstHHI	GCGC	5 cut(s)	6, 31, 160, 241, 675
BstKTI	GATC	6 cut(s)	607, 852, 912, 988, 1042, 1258
BstMAI	GTCTC	3 cut(s)	218, 879, 1060
BstMBI	GATC	6 cut(s)	604, 849, 909, 985, 1039, 1255
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 155, 204, 875
BstNI	CCWGG	2 cut(s)	193, 574
BstSCI	CCNGG	2 cut(s)	191, 572
BstSLI	GKGCMC	1 cut(s)	494
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	6 cut(s)	53, 56, 223, 440, 497, 856
BstV2I	GAAGAC	1 cut(s)	962
BstX2I	RGATCY	1 cut(s)	604
BstYI	RGATCY	1 cut(s)	604
BsuI	GTATCC	1 cut(s)	658
BsuRI	GGCC	5 cut(s)	201, 385, 572, 690, 746
BtrI	CACGTC	1 cut(s)	679
BtsCI	GGATG	5 cut(s)	235, 655, 826, 832, 872
BtsI	GCAGTG	2 cut(s)	202, 1120
BtsIMutI	CAGTG	4 cut(s)	202, 1120, 1212, 1297
Cac8I	GCNNGC	4 cut(s)	209, 249, 313, 490
CaiI	CAGNNNCTG	1 cut(s)	461
CfoI	GCGC	5 cut(s)	6, 31, 160, 241, 675
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	383, 689
CseI	GACGC	2 cut(s)	57, 200
Csp6I	GTAC	4 cut(s)	298, 559, 619, 1000
CviAII	CATG	2 cut(s)	359, 1259
CviQI	GTAC	4 cut(s)	298, 559, 619, 1000
DdeI	CTNAG	5 cut(s)	222, 523, 1018, 1215, 1229
DpnI	GATC	6 cut(s)	606, 851, 911, 987, 1041, 1257
DpnII	GATC	6 cut(s)	604, 849, 909, 985, 1039, 1255
EaeI	YGGCCR	2 cut(s)	199, 744
Eam1104I	CTCTTC	2 cut(s)	693, 825
EarI	CTCTTC	2 cut(s)	693, 825
EciI	GGCGGA	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	642
Eco147I	AGGCCT	1 cut(s)	572
Eco31I	GGTCTC	1 cut(s)	879
Eco32I	GATATC	2 cut(s)	335, 540
Eco47III	AGCGCT	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	191, 572
EcoRV	GATATC	2 cut(s)	335, 540
EcoT14I	CCWWGG	1 cut(s)	642
ErhI	CCWWGG	1 cut(s)	642
Esp3I	CGTCTC	1 cut(s)	218
FaeI	CATG	2 cut(s)	362, 1262
FaqI	GGGAC	3 cut(s)	124, 350, 517
FatI	CATG	2 cut(s)	358, 1258
FauI	CCCGC	1 cut(s)	481
FbaI	TGATCA	2 cut(s)	849, 1255
FokI	GGATG	5 cut(s)	242, 642, 833, 839, 859
FspBI	CTAG	1 cut(s)	308
GlaI	GCGC	5 cut(s)	5, 30, 159, 240, 674
GsuI	CTGGAG	1 cut(s)	140
HaeII	RGCGCY	3 cut(s)	32, 161, 676
HaeIII	GGCC	5 cut(s)	201, 385, 572, 690, 746
HapII	CCGG	1 cut(s)	242
HgaI	GACGC	2 cut(s)	57, 200
HhaI	GCGC	5 cut(s)	6, 31, 160, 241, 675
Hin1I	GRCGYC	2 cut(s)	35, 68
Hin1II	CATG	2 cut(s)	362, 1262
Hin6I	GCGC	5 cut(s)	4, 29, 158, 239, 673
HinP1I	GCGC	5 cut(s)	4, 29, 158, 239, 673
HincII	GTYRAC	2 cut(s)	807, 1012
HindII	GTYRAC	2 cut(s)	807, 1012
HinfI	GANTC	6 cut(s)	131, 143, 324, 452, 458, 530
HpaII	CCGG	1 cut(s)	242
Hpy166II	GTNNAC	4 cut(s)	178, 300, 807, 1012
Hpy188I	TCNGA	4 cut(s)	457, 601, 944, 1021
Hpy188III	TCNNGA	6 cut(s)	418, 434, 853, 884, 907, 1067
Hpy8I	GTNNAC	4 cut(s)	178, 300, 807, 1012
Hpy99I	CGWCG	2 cut(s)	97, 1192
HpyAV	CCTTC	4 cut(s)	562, 662, 1064, 1076
HpyCH4III	ACNGT	4 cut(s)	16, 115, 1009, 1162
HpyCH4IV	ACGT	2 cut(s)	35, 678
HpyCH4V	TGCA	4 cut(s)	207, 428, 587, 872
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 155, 204, 875
HpyF3I	CTNAG	5 cut(s)	222, 523, 1018, 1215, 1229
HpySE526I	ACGT	2 cut(s)	35, 678
Hsp92I	GRCGYC	2 cut(s)	35, 68
Hsp92II	CATG	2 cut(s)	362, 1262
HspAI	GCGC	5 cut(s)	4, 29, 158, 239, 673
Ksp22I	TGATCA	2 cut(s)	849, 1255
Kzo9I	GATC	6 cut(s)	604, 849, 909, 985, 1039, 1255
LmnI	GCTCC	4 cut(s)	121, 436, 482, 944
Lsp1109I	GCAGC	6 cut(s)	53, 56, 223, 440, 497, 856
LweI	GCATC	3 cut(s)	220, 881, 1055
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	2 cut(s)	35, 678
MaeIII	GTNAC	3 cut(s)	439, 662, 735
MalI	GATC	6 cut(s)	606, 851, 911, 987, 1041, 1257
MboI	GATC	6 cut(s)	604, 849, 909, 985, 1039, 1255
MfeI	CAATTG	1 cut(s)	810
MflI	RGATCY	1 cut(s)	604
MhlI	GDGCHC	1 cut(s)	494
MlsI	TGGCCA	1 cut(s)	746
MluCI	AATT	5 cut(s)	422, 704, 798, 810, 1194
MluNI	TGGCCA	1 cut(s)	746
MlyI	GAGTC	3 cut(s)	333, 452, 539
MmeI	TCCRAC	3 cut(s)	159, 207, 460
Mox20I	TGGCCA	1 cut(s)	746
MscI	TGGCCA	1 cut(s)	746
MseI	TTAA	5 cut(s)	11, 285, 770, 1004, 1095
MslI	CAYNNNNRTG	1 cut(s)	94
Msp20I	TGGCCA	1 cut(s)	746
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	2 cut(s)	193, 574
MunI	CAATTG	1 cut(s)	810
MvaI	CCWGG	2 cut(s)	193, 574
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	4 cut(s)	47, 155, 204, 875
NdeII	GATC	6 cut(s)	604, 849, 909, 985, 1039, 1255
NlaIII	CATG	2 cut(s)	362, 1262
NlaIV	GGNNCC	2 cut(s)	636, 691
NmeAIII	GCCGAG	2 cut(s)	411, 1303
NspV	TTCGAA	1 cut(s)	141
PceI	AGGCCT	1 cut(s)	572
PcsI	WCGNNNNNNNCGW	1 cut(s)	92
PfeI	GAWTC	3 cut(s)	131, 143, 452
PflFI	GACNNNGTC	1 cut(s)	167
PleI	GAGTC	3 cut(s)	332, 452, 538
PpsI	GAGTC	3 cut(s)	332, 452, 538
Psp6I	CCWGG	2 cut(s)	191, 572
PspGI	CCWGG	2 cut(s)	191, 572
PspN4I	GGNNCC	2 cut(s)	636, 691
PspPI	GGNCC	2 cut(s)	383, 689
PstNI	CAGNNNCTG	1 cut(s)	461
PsuI	RGATCY	1 cut(s)	604
PsyI	GACNNNGTC	1 cut(s)	167
RsaI	GTAC	4 cut(s)	299, 560, 620, 1001
RsaNI	GTAC	4 cut(s)	298, 559, 619, 1000
RseI	CAYNNNNRTG	1 cut(s)	94
SaqAI	TTAA	5 cut(s)	11, 285, 770, 1004, 1095
Sau3AI	GATC	6 cut(s)	604, 849, 909, 985, 1039, 1255
Sau96I	GGNCC	2 cut(s)	383, 689
ScaI	AGTACT	1 cut(s)	1001
SchI	GAGTC	3 cut(s)	333, 452, 539
ScrFI	CCNGG	2 cut(s)	193, 574
SduI	GDGCHC	1 cut(s)	494
SfaNI	GCATC	3 cut(s)	220, 881, 1055
SfuI	TTCGAA	1 cut(s)	141
SgrAI	CRCCGGYG	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	94
SmlI	CTYRAG	2 cut(s)	416, 1050
SmoI	CTYRAG	2 cut(s)	416, 1050
Sse9I	AATT	5 cut(s)	422, 704, 798, 810, 1194
SseBI	AGGCCT	1 cut(s)	572
SsiI	CCGC	7 cut(s)	6, 48, 104, 198, 233, 488, 876
SspMI	CTAG	1 cut(s)	308
StuI	AGGCCT	1 cut(s)	572
StyD4I	CCNGG	2 cut(s)	191, 572
StyI	CCWWGG	1 cut(s)	642
TaaI	ACNGT	4 cut(s)	16, 115, 1009, 1162
TaiI	ACGT	2 cut(s)	38, 681
TaqI	TCGA	4 cut(s)	141, 327, 883, 988
TasI	AATT	5 cut(s)	422, 704, 798, 810, 1194
TatI	WGTACW	3 cut(s)	297, 558, 999
TauI	GCSGC	4 cut(s)	9, 50, 201, 236
TfiI	GAWTC	3 cut(s)	131, 143, 452
Tru1I	TTAA	5 cut(s)	11, 285, 770, 1004, 1095
Tru9I	TTAA	5 cut(s)	11, 285, 770, 1004, 1095
TscAI	CASTG	4 cut(s)	209, 1120, 1219, 1297
TseI	GCWGC	6 cut(s)	41, 44, 236, 428, 485, 869
TspDTI	ATGAA	6 cut(s)	243, 644, 709, 804, 843, 1131
TspRI	CASTG	4 cut(s)	209, 1120, 1219, 1297
Tth111I	GACNNNGTC	1 cut(s)	167
XapI	RAATTY	2 cut(s)	422, 704
XspI	CTAG	1 cut(s)	308
ZraI	GACGTC	1 cut(s)	36
ZrmI	AGTACT	1 cut(s)	1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.