Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006094

Physical Location & Seq

Genomic Coordinates Reverse (-)

45511624 .. 45515590

Gene Structure 3967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G557400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGAAGTCAGAATGGAAAGAAAAAACAAGTTGGAGAAGAAAGACGGAGAGAGAGAAAGAAAGAAATACAATGATGCGTATGAGCGAAAGAGTGTCGTGGTGTTGGGCGCTGATAGTATTATTGGCACTAGATTGTAGTGGTGTTGTGTATTCTTCGTCGTCGTCTTGGGCTGTAGATGGGAAGGTGTTGGAGCTGGACGACTCCAACTTCGATTCGGCCATTTCGGCCCTGGACTTGGTCTTGGTTGATTTCTACGCCCCATGGTGCGGCCACTGCAAGCGCCTCTCTCCTCAGTTGGATGAAGCTGCTCCCTTGCTTGCTGACTTGAAACAGCCAATAGTGATAGCAAAACTTAATGCTGACAAGTTTACCTCTCTAGCTCGAAAATATGAAATTGATGCATATCCTACCCTGAAGCTCTTTATGCATGGCGTCCCCATAGAATATAATGGACCCAGGAAAGCAGATTCGCTTGTTCGTTATCTGAAAAAGTTTGCGGCTCCTGATGTTTCTATACTTGATTCAGACTCTGCTATTAGCGACTTTGTCCAAGCAGCTGGAACTTACTTTCCTATATACATCGGTTTTGGCTTGAATGAGTCATTGATATCAAAGTTAGCTATAAAGTACAAAAAGAAGGCCTGGTTTTCAGTTGCAAAGGATTTCTCTGAGGATGTAATGGTATTGTATGATTTTGACAAACTTCCTGCTTTGGCATCCCTTCATCCAACTTACAATGAGCACAACATCTTCTATGGCCCCTATGAAGAGGAGTTTTTGGAAGAGTTTATAAGACACAGTTTGTTCCCTTTGGCCATGCCCATAAATTATGAGACATTAAAATTGTTGAACGATGATGAAAGGAAAATTGTTTTGACAATTGTGGAGGATGAGGATGAAGAGAAGTCAAAAAAACTTATCAAGATTTTGAAATCAGCTGCATCTGCAAATCGGGATTTTGTCTTTGGTTATGTTGGGATCAAACAGTGGGAAGACTTTGCTGATACATTTGGAGCCAACAAGAAGACAAGACTTCCAAAAATGGTTGTTTGGGATAGAATGGAGGAGTACTTTACTGTGAATGGTTCAGAAAGCATTGATGAAGAAGATCAGGCATCTCAAGTCTCACAGTTCCTGGAAGGATATAAGGAAGGAAGAATAATAAAGGAAAGAATTGGTGGTCCATCGTTTATGGGCTTTATGTCTTCATTTATTGGGATTGGAACTGTATACATAATTGGTTTTGTGGTTGTGGTAATGATGCTTATTAGATCAATCAATAAAGGAGATGATGAACATCCTGCGGTCGCTACTGGTGACCAGATTGATCATGCTAGCAGTGAGGCCGAAAACAGAGAGCATAAATCTGGAGAAAAGGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005911 GO:0006457 GO:0006950 GO:0008150 GO:0009505 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0030054 GO:0030312 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0071944 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

462

Amino Acids

52.46

Weight (kDa)

5.11

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35620
fragaria_vesca	FvH4_5g30970 FvH4_5g30970
malus_domestica	MD08G1220700.v1.1 MD09G1249700.v1.1 MD15G1411400.v1.1
prunus_persica	Prupe.1G557400_v2.0.a1
pyrus_communis	pycom08g19150 pycom15g36620
rosa_chinensis	RchiOBHm_Chr7g0226321 RchiOBHm_Chr7g0226361
rosa_laevigata	RLG00000001746 RLG00000001751
rosa_multiflora	Rmu_sc0001044.1_g000026 Rmu_sc0004322.1_g000024 Rmu_sc0004426.1_g000003 Rmu_sc0004426.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233030 Rroxscaffold_5G00366610
rosa_rugosa	Rorug07G0236600
rosa_samantha	Rh7AG383600 Rh7BG370400 Rh7CG403200 Rh7DG382000
rosa_wichuraiana	Rw7G032130 Rw7G032150 Rw7G032210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	791
AccI	GTMKAC	1 cut(s)	1230
AciI	CCGC	3 cut(s)	267, 497, 1304
AclWI	GGATC	1 cut(s)	986
AcoI	YGGCCR	3 cut(s)	216, 268, 813
AcuI	CTGAAG	1 cut(s)	434
AcyI	GRCGYC	1 cut(s)	432
AfaI	GTAC	2 cut(s)	629, 1070
AfiI	CCNNNNNNNGG	2 cut(s)	235, 266
AgsI	TTSAA	4 cut(s)	328, 595, 850, 931
AjnI	CCWGG	4 cut(s)	228, 455, 641, 1134
AloI	GAACNNNNNNTCC	2 cut(s)	553, 585
AluBI	AGCT	7 cut(s)	193, 305, 380, 418, 557, 620, 938
AluI	AGCT	7 cut(s)	193, 305, 380, 418, 557, 620, 938
Alw21I	GWGCWC	1 cut(s)	744
Alw26I	GTCTC	2 cut(s)	827, 1129
AlwI	GGATC	1 cut(s)	986
AlwNI	CAGNNNCTG	2 cut(s)	530, 1135
AoxI	GGCC	7 cut(s)	216, 225, 268, 639, 757, 813, 1344
ApeKI	GCWGC	3 cut(s)	305, 554, 938
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AspLEI	GCGC	2 cut(s)	109, 282
AspS9I	GGNCC	4 cut(s)	226, 452, 758, 1181
AsuHPI	GGTGA	1 cut(s)	1328
AsuNHI	GCTAGC	1 cut(s)	1334
AvaII	GGWCC	2 cut(s)	452, 1181
BalI	TGGCCA	1 cut(s)	815
BbsI	GAAGAC	3 cut(s)	999, 1031, 1197
Bbv12I	GWGCWC	1 cut(s)	744
BbvI	GCAGC	3 cut(s)	292, 566, 925
BccI	CCATC	2 cut(s)	170, 1192
BciT130I	CCWGG	4 cut(s)	230, 457, 643, 1136
BclI	TGATCA	1 cut(s)	1327
BcoDI	GTCTC	2 cut(s)	827, 1129
BfaI	CTAG	3 cut(s)	128, 377, 1335
BfmI	CTRYAG	1 cut(s)	171
BfoI	RGCGCY	2 cut(s)	110, 283
BglI	GCCNNNNNGGC	1 cut(s)	224
BisI	GCNGC	5 cut(s)	268, 306, 498, 555, 939
BlsI	GCNGC	5 cut(s)	269, 307, 499, 556, 940
BmcAI	AGTACT	1 cut(s)	1070
Bme1390I	CCNGG	4 cut(s)	230, 457, 643, 1136
Bme18I	GGWCC	2 cut(s)	452, 1181
BmgT120I	GGNCC	4 cut(s)	226, 452, 758, 1181
BmiI	GGNNCC	4 cut(s)	454, 501, 760, 1015
BmrFI	CCNGG	4 cut(s)	230, 457, 643, 1136
BmsI	GCATC	6 cut(s)	63, 388, 725, 950, 1124, 1251
BmtI	GCTAGC	1 cut(s)	1338
BpiI	GAAGAC	3 cut(s)	999, 1031, 1197
BpuEI	CTTGAG	1 cut(s)	1104
BsaBI	GATNNNNATC	2 cut(s)	402, 1296
BsaHI	GRCGYC	1 cut(s)	432
BsaJI	CCNNGG	3 cut(s)	228, 260, 455
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 266
Bse1I	ACTGG	1 cut(s)	1318
Bse8I	GATNNNNATC	2 cut(s)	402, 1296
BseBI	CCWGG	4 cut(s)	230, 457, 643, 1136
BseDI	CCNNGG	3 cut(s)	228, 260, 455
BseGI	GGATG	7 cut(s)	304, 679, 716, 724, 895, 901, 1297
BseJI	GATNNNNATC	2 cut(s)	402, 1296
BseLI	CCNNNNNNNGG	2 cut(s)	235, 266
BseMII	CTCAG	2 cut(s)	305, 660
BseNI	ACTGG	1 cut(s)	1318
BseRI	GAGGAG	3 cut(s)	279, 785, 1079
BseXI	GCAGC	3 cut(s)	292, 566, 925
Bsh1285I	CGRYCG	1 cut(s)	1308
BshFI	GGCC	7 cut(s)	218, 227, 270, 641, 759, 815, 1346
BsiEI	CGRYCG	1 cut(s)	1308
BsiHKAI	GWGCWC	1 cut(s)	744
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	2 cut(s)	235, 266
BsmAI	GTCTC	2 cut(s)	827, 1129
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	7 cut(s)	218, 227, 270, 641, 759, 815, 1346
Bsp1286I	GDGCHC	1 cut(s)	744
Bsp143I	GATC	4 cut(s)	978, 1108, 1271, 1327
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	3 cut(s)	267, 497, 1304
BspANI	GGCC	7 cut(s)	218, 227, 270, 641, 759, 815, 1346
BspCNI	CTCAG	2 cut(s)	304, 661
BspLI	GGNNCC	4 cut(s)	454, 501, 760, 1015
BspOI	GCTAGC	1 cut(s)	1338
BspPI	GGATC	1 cut(s)	986
BsrI	ACTGG	1 cut(s)	1318
BssECI	CCNNGG	3 cut(s)	228, 260, 455
BssMI	GATC	4 cut(s)	978, 1108, 1271, 1327
BssNAI	GTATAC	1 cut(s)	1231
BssNI	GRCGYC	1 cut(s)	432
BssT1I	CCWWGG	1 cut(s)	260
Bst1107I	GTATAC	1 cut(s)	1231
Bst2UI	CCWGG	4 cut(s)	230, 457, 643, 1136
Bst4CI	ACNGT	5 cut(s)	800, 987, 1078, 1131, 1228
Bst6I	CTCTTC	3 cut(s)	762, 777, 894
BstACI	GRCGYC	1 cut(s)	432
BstC8I	GCNNGC	3 cut(s)	278, 318, 1336
BstDEI	CTNAG	2 cut(s)	291, 669
BstDSI	CCRYGG	1 cut(s)	260
BstEII	GGTNACC	1 cut(s)	1316
BstF5I	GGATG	7 cut(s)	304, 679, 716, 724, 895, 901, 1297
BstH2I	RGCGCY	2 cut(s)	110, 283
BstHHI	GCGC	2 cut(s)	109, 282
BstKTI	GATC	4 cut(s)	981, 1111, 1274, 1330
BstMAI	GTCTC	2 cut(s)	827, 1129
BstMBI	GATC	4 cut(s)	978, 1108, 1271, 1327
BstMCI	CGRYCG	1 cut(s)	1308
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 273, 424, 944
BstNI	CCWGG	4 cut(s)	230, 457, 643, 1136
BstPI	GGTNACC	1 cut(s)	1316
BstSCI	CCNGG	4 cut(s)	228, 455, 641, 1134
BstSFI	CTRYAG	1 cut(s)	171
BstV1I	GCAGC	3 cut(s)	292, 566, 925
BstV2I	GAAGAC	3 cut(s)	999, 1031, 1197
BstXI	CCANNNNNNTGG	1 cut(s)	557
BstZ17I	GTATAC	1 cut(s)	1231
BsuRI	GGCC	7 cut(s)	218, 227, 270, 641, 759, 815, 1346
BtgI	CCRYGG	1 cut(s)	260
BtsCI	GGATG	7 cut(s)	304, 679, 716, 724, 895, 901, 1297
BtsI	GCAGTG	2 cut(s)	271, 1345
BtsIMutI	CAGTG	3 cut(s)	271, 992, 1345
Cac8I	GCNNGC	3 cut(s)	278, 318, 1336
CaiI	CAGNNNCTG	2 cut(s)	530, 1135
CfoI	GCGC	2 cut(s)	109, 282
Cfr13I	GGNCC	4 cut(s)	226, 452, 758, 1181
CseI	GACGC	1 cut(s)	421
Csp6I	GTAC	2 cut(s)	628, 1069
CviAII	CATG	4 cut(s)	261, 428, 817, 1331
CviQI	GTAC	2 cut(s)	628, 1069
DdeI	CTNAG	2 cut(s)	291, 669
DpnI	GATC	4 cut(s)	980, 1110, 1273, 1329
DpnII	GATC	4 cut(s)	978, 1108, 1271, 1327
EaeI	YGGCCR	3 cut(s)	216, 268, 813
Eam1104I	CTCTTC	3 cut(s)	762, 777, 894
EarI	CTCTTC	3 cut(s)	762, 777, 894
Eco130I	CCWWGG	1 cut(s)	260
Eco147I	AGGCCT	1 cut(s)	641
Eco32I	GATATC	1 cut(s)	609
Eco47I	GGWCC	2 cut(s)	452, 1181
Eco57I	CTGAAG	1 cut(s)	434
Eco91I	GGTNACC	1 cut(s)	1316
EcoO65I	GGTNACC	1 cut(s)	1316
EcoRII	CCWGG	4 cut(s)	228, 455, 641, 1134
EcoRV	GATATC	1 cut(s)	609
EcoT14I	CCWWGG	1 cut(s)	260
EcoT22I	ATGCAT	2 cut(s)	403, 429
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	4 cut(s)	264, 431, 820, 1334
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	4 cut(s)	260, 427, 816, 1330
FbaI	TGATCA	1 cut(s)	1327
FblI	GTMKAC	1 cut(s)	1230
Fnu4HI	GCNGC	5 cut(s)	268, 306, 498, 555, 939
FokI	GGATG	7 cut(s)	311, 686, 703, 711, 902, 908, 1284
Fsp4HI	GCNGC	5 cut(s)	268, 306, 498, 555, 939
FspBI	CTAG	3 cut(s)	128, 377, 1335
GlaI	GCGC	2 cut(s)	108, 281
GluI	GCNGC	5 cut(s)	268, 306, 498, 555, 939
HaeII	RGCGCY	2 cut(s)	110, 283
HaeIII	GGCC	7 cut(s)	218, 227, 270, 641, 759, 815, 1346
HgaI	GACGC	1 cut(s)	421
HhaI	GCGC	2 cut(s)	109, 282
Hin1I	GRCGYC	1 cut(s)	432
Hin1II	CATG	4 cut(s)	264, 431, 820, 1334
Hin6I	GCGC	2 cut(s)	107, 280
HinP1I	GCGC	2 cut(s)	107, 280
HinfI	GANTC	6 cut(s)	200, 212, 467, 521, 527, 599
HphI	GGTGA	1 cut(s)	1328
Hpy166II	GTNNAC	2 cut(s)	369, 1231
Hpy188I	TCNGA	5 cut(s)	10, 486, 526, 670, 1090
Hpy188III	TCNNGA	4 cut(s)	503, 922, 953, 1368
Hpy8I	GTNNAC	2 cut(s)	369, 1231
Hpy99I	CGWCG	2 cut(s)	160, 163
HpyAV	CCTTC	5 cut(s)	175, 631, 731, 1133, 1145
HpyCH4III	ACNGT	5 cut(s)	800, 987, 1078, 1131, 1228
HpyCH4V	TGCA	6 cut(s)	276, 401, 427, 656, 941, 947
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 273, 424, 944
HpyF3I	CTNAG	2 cut(s)	291, 669
Hsp92I	GRCGYC	1 cut(s)	432
Hsp92II	CATG	4 cut(s)	264, 431, 820, 1334
HspAI	GCGC	2 cut(s)	107, 280
Ksp22I	TGATCA	1 cut(s)	1327
Kzo9I	GATC	4 cut(s)	978, 1108, 1271, 1327
LmnI	GCTCC	4 cut(s)	190, 313, 505, 1013
Lsp1109I	GCAGC	3 cut(s)	292, 566, 925
LweI	GCATC	6 cut(s)	63, 388, 725, 950, 1124, 1251
MaeI	CTAG	3 cut(s)	128, 377, 1335
MaeIII	GTNAC	1 cut(s)	1316
MalI	GATC	4 cut(s)	980, 1110, 1273, 1329
MboI	GATC	4 cut(s)	978, 1108, 1271, 1327
MfeI	CAATTG	1 cut(s)	879
MhlI	GDGCHC	1 cut(s)	744
MlsI	TGGCCA	1 cut(s)	815
MluCI	AATT	7 cut(s)	393, 826, 842, 867, 879, 1173, 1236
MluNI	TGGCCA	1 cut(s)	815
MlyI	GAGTC	3 cut(s)	194, 521, 608
MmeI	TCCRAC	5 cut(s)	11, 168, 228, 276, 752
MnlI	CCTC	9 cut(s)	293, 300, 382, 664, 763, 880, 886, 1057, 1336
Mox20I	TGGCCA	1 cut(s)	815
Mph1103I	ATGCAT	2 cut(s)	403, 429
MscI	TGGCCA	1 cut(s)	815
MseI	TTAA	2 cut(s)	354, 839
Msp20I	TGGCCA	1 cut(s)	815
MspA1I	CMGCKG	2 cut(s)	557, 938
MspR9I	CCNGG	4 cut(s)	230, 457, 643, 1136
MunI	CAATTG	1 cut(s)	879
MvaI	CCWGG	4 cut(s)	230, 457, 643, 1136
MwoI	GCNNNNNNNGC	4 cut(s)	224, 273, 424, 944
NcoI	CCATGG	1 cut(s)	260
NdeII	GATC	4 cut(s)	978, 1108, 1271, 1327
NheI	GCTAGC	1 cut(s)	1334
NlaIII	CATG	4 cut(s)	264, 431, 820, 1334
NlaIV	GGNNCC	4 cut(s)	454, 501, 760, 1015
NmuCI	GTSAC	1 cut(s)	1316
NsiI	ATGCAT	2 cut(s)	403, 429
PceI	AGGCCT	1 cut(s)	641
PfeI	GAWTC	3 cut(s)	212, 467, 521
PflFI	GACNNNGTC	2 cut(s)	236, 545
PfoI	TCCNGGA	1 cut(s)	1134
PkrI	GCNGC	5 cut(s)	269, 307, 499, 556, 940
PleI	GAGTC	3 cut(s)	194, 521, 607
PpsI	GAGTC	3 cut(s)	194, 521, 607
PsiI	TTATAA	1 cut(s)	791
Psp6I	CCWGG	4 cut(s)	228, 455, 641, 1134
PspEI	GGTNACC	1 cut(s)	1316
PspGI	CCWGG	4 cut(s)	228, 455, 641, 1134
PspN4I	GGNNCC	4 cut(s)	454, 501, 760, 1015
PspPI	GGNCC	4 cut(s)	226, 452, 758, 1181
PstNI	CAGNNNCTG	2 cut(s)	530, 1135
PsyI	GACNNNGTC	2 cut(s)	236, 545
PvuII	CAGCTG	2 cut(s)	557, 938
RsaI	GTAC	2 cut(s)	629, 1070
RsaNI	GTAC	2 cut(s)	628, 1069
SaqAI	TTAA	2 cut(s)	354, 839
SatI	GCNGC	5 cut(s)	268, 306, 498, 555, 939
Sau3AI	GATC	4 cut(s)	978, 1108, 1271, 1327
Sau96I	GGNCC	4 cut(s)	226, 452, 758, 1181
ScaI	AGTACT	1 cut(s)	1070
SchI	GAGTC	3 cut(s)	194, 521, 608
ScrFI	CCNGG	4 cut(s)	230, 457, 643, 1136
SduI	GDGCHC	1 cut(s)	744
SetI	ASST	9 cut(s)	186, 195, 307, 374, 382, 420, 559, 622, 940
SfaNI	GCATC	6 cut(s)	63, 388, 725, 950, 1124, 1251
SfcI	CTRYAG	1 cut(s)	171
SfiI	GGCCNNNNNGGCC	1 cut(s)	224
SinI	GGWCC	2 cut(s)	452, 1181
SmlI	CTYRAG	1 cut(s)	1119
SmoI	CTYRAG	1 cut(s)	1119
Sse9I	AATT	7 cut(s)	393, 826, 842, 867, 879, 1173, 1236
SseBI	AGGCCT	1 cut(s)	641
SsiI	CCGC	3 cut(s)	267, 497, 1304
SspMI	CTAG	3 cut(s)	128, 377, 1335
StuI	AGGCCT	1 cut(s)	641
StyD4I	CCNGG	4 cut(s)	228, 455, 641, 1134
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	5 cut(s)	800, 987, 1078, 1131, 1228
TaqI	TCGA	2 cut(s)	210, 382
TasI	AATT	7 cut(s)	393, 826, 842, 867, 879, 1173, 1236
TatI	WGTACW	2 cut(s)	627, 1068
TauI	GCSGC	2 cut(s)	270, 500
TfiI	GAWTC	3 cut(s)	212, 467, 521
Tru1I	TTAA	2 cut(s)	354, 839
Tru9I	TTAA	2 cut(s)	354, 839
TscAI	CASTG	3 cut(s)	278, 992, 1345
TseFI	GTSAC	1 cut(s)	1316
TseI	GCWGC	3 cut(s)	305, 554, 938
Tsp45I	GTSAC	1 cut(s)	1316
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	3 cut(s)	278, 992, 1345
Tth111I	GACNNNGTC	2 cut(s)	236, 545
VpaK11BI	GGWCC	2 cut(s)	452, 1181
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XmiI	GTMKAC	1 cut(s)	1230
XspI	CTAG	3 cut(s)	128, 377, 1335
ZrmI	AGTACT	1 cut(s)	1070
Zsp2I	ATGCAT	2 cut(s)	403, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.