Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0006094

Physical Location & Seq

Genomic Coordinates Reverse (-)

46645223 .. 46646515

Gene Structure 1293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G032210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGGGCCAAGGAAAGCCGATTTGCTTGTTCGTTATCTCAAGAAATTTGCAGCTCCCGATGTTACCCTATTTGATTCAGACTCTGCTATTGCTGAATTTGTTGGAGCGGCAGGCACATTCTTCCCCATATATGATTTCTCTGAGGATGTAATGCTATTGTATGATTTTGACAAGGTTCCTGCTCTGGTATCCCTTCATCCAAGTTGCGATGAGCGCTACGTCTTTTACGGCCCCTTTGAAGAGGAATTCTTGGAAGATTTCATTAAACAAAGTTTGTTACCTTTGGCCATGCCCATCAACCATGACACATTAAAATCATTGGACGATGATGAAAGGAAAATTATGTTGACAATTGTGGAGGATGAGGATGAAGAAAGTCAAAGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005911 GO:0006457 GO:0006950 GO:0008150 GO:0009505 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0030054 GO:0030312 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0071944 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

129

Amino Acids

14.81

Weight (kDa)

4.23

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35620
fragaria_vesca	FvH4_5g30970 FvH4_5g30970
malus_domestica	MD08G1220700.v1.1 MD09G1249700.v1.1 MD15G1411400.v1.1
prunus_persica	Prupe.1G557400_v2.0.a1
pyrus_communis	pycom08g19150 pycom15g36620
rosa_chinensis	RchiOBHm_Chr7g0226321 RchiOBHm_Chr7g0226361
rosa_laevigata	RLG00000001746 RLG00000001751
rosa_multiflora	Rmu_sc0001044.1_g000026 Rmu_sc0004322.1_g000024 Rmu_sc0004426.1_g000003 Rmu_sc0004426.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233030 Rroxscaffold_5G00366610
rosa_rugosa	Rorug07G0236600
rosa_samantha	Rh7AG383600 Rh7BG370400 Rh7CG403200 Rh7DG382000
rosa_wichuraiana	Rw7G032130 Rw7G032150 Rw7G032210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	107
AciI	CCGC	1 cut(s)	107
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	3 cut(s)	44, 95, 245
AfeI	AGCGCT	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	239
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
AlwNI	CAGNNNCTG	1 cut(s)	83
Aor51HI	AGCGCT	1 cut(s)	215
AoxI	GGCC	3 cut(s)	5, 229, 285
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	3 cut(s)	44, 95, 245
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	2 cut(s)	5, 230
BalI	TGGCCA	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	1 cut(s)	302
BceAI	ACGGC	1 cut(s)	244
BciVI	GTATCC	1 cut(s)	199
BfoI	RGCGCY	1 cut(s)	217
BfuI	GTATCC	1 cut(s)	199
BisI	GCNGC	2 cut(s)	51, 108
BlsI	GCNGC	2 cut(s)	52, 109
BmgT120I	GGNCC	2 cut(s)	5, 230
BmiI	GGNNCC	3 cut(s)	6, 177, 232
BpuEI	CTTGAG	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	4 cut(s)	151, 196, 367, 373
BseMII	CTCAG	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	62
BshFI	GGCC	3 cut(s)	7, 231, 287
BsnI	GGCC	3 cut(s)	7, 231, 287
BspACI	CCGC	1 cut(s)	107
BspANI	GGCC	3 cut(s)	7, 231, 287
BspCNI	CTCAG	1 cut(s)	133
BspLI	GGNNCC	3 cut(s)	6, 177, 232
BsrBI	CCGCTC	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	8
Bst6I	CTCTTC	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	1 cut(s)	141
BstF5I	GGATG	4 cut(s)	151, 196, 367, 373
BstH2I	RGCGCY	1 cut(s)	217
BstHHI	GCGC	1 cut(s)	216
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	62
BsuI	GTATCC	1 cut(s)	199
BsuRI	GGCC	3 cut(s)	7, 231, 287
BtgZI	GCGATG	1 cut(s)	222
BtsCI	GGATG	4 cut(s)	151, 196, 367, 373
Cac8I	GCNNGC	1 cut(s)	112
CaiI	CAGNNNCTG	1 cut(s)	83
CfoI	GCGC	1 cut(s)	216
Cfr13I	GGNCC	2 cut(s)	5, 230
CviAII	CATG	2 cut(s)	289, 302
CviJI	RGCY	5 cut(s)	7, 17, 53, 231, 287
CviKI_1	RGCY	5 cut(s)	7, 17, 53, 231, 287
DdeI	CTNAG	1 cut(s)	141
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	8
Eco47III	AGCGCT	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	8
FaeI	CATG	2 cut(s)	292, 305
FaiI	YATR	7 cut(s)	128, 130, 132, 162, 290, 303, 344
FatI	CATG	2 cut(s)	288, 301
Fnu4HI	GCNGC	2 cut(s)	51, 108
FokI	GGATG	4 cut(s)	158, 183, 374, 380
Fsp4HI	GCNGC	2 cut(s)	51, 108
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	2 cut(s)	51, 108
HaeII	RGCGCY	1 cut(s)	217
HaeIII	GGCC	3 cut(s)	7, 231, 287
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	292, 305
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HincII	GTYRAC	1 cut(s)	348
HindII	GTYRAC	1 cut(s)	348
HinfI	GANTC	2 cut(s)	74, 80
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	2 cut(s)	79, 142
Hpy188III	TCNNGA	2 cut(s)	40, 56
Hpy8I	GTNNAC	1 cut(s)	348
HpyAV	CCTTC	1 cut(s)	203
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	1 cut(s)	50
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	2 cut(s)	292, 305
HspAI	GCGC	1 cut(s)	214
LmnI	GCTCC	2 cut(s)	58, 104
LpnPI	CCDG	3 cut(s)	96, 170, 192
Lsp1109I	GCAGC	1 cut(s)	62
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	2 cut(s)	61, 276
MbiI	CCGCTC	1 cut(s)	107
MboII	GAAGA	4 cut(s)	112, 251, 266, 383
MfeI	CAATTG	1 cut(s)	351
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	5 cut(s)	44, 95, 245, 339, 351
MluNI	TGGCCA	1 cut(s)	287
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	4 cut(s)	136, 235, 352, 358
Mox20I	TGGCCA	1 cut(s)	287
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	2 cut(s)	264, 311
Msp20I	TGGCCA	1 cut(s)	287
MunI	CAATTG	1 cut(s)	351
MwoI	GCNNNNNNNGC	1 cut(s)	213
NlaIII	CATG	2 cut(s)	292, 305
NlaIV	GGNNCC	3 cut(s)	6, 177, 232
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	52, 109
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PspN4I	GGNNCC	3 cut(s)	6, 177, 232
PspPI	GGNCC	2 cut(s)	5, 230
PstNI	CAGNNNCTG	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	264, 311
SatI	GCNGC	2 cut(s)	51, 108
Sau96I	GGNCC	2 cut(s)	5, 230
SchI	GAGTC	1 cut(s)	74
SetI	ASST	4 cut(s)	55, 177, 222, 283
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	5 cut(s)	44, 95, 245, 339, 351
SsiI	CCGC	1 cut(s)	107
StyI	CCWWGG	1 cut(s)	8
TaiI	ACGT	1 cut(s)	222
TasI	AATT	5 cut(s)	44, 95, 245, 339, 351
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	2 cut(s)	264, 311
Tru9I	TTAA	2 cut(s)	264, 311
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	4 cut(s)	185, 250, 345, 384
XapI	RAATTY	3 cut(s)	44, 95, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.