AT1G48960

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003632
Physical Location & Seq
Forward (+)
18112458 .. 18113733
1276 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48960.1

Sequence Viewer

Length: 660 bp
ATGGAAGATGTACGGAGGATTGTGGTGGTCGTAGAAGATAAACAAGCGGCGAGGACGGCGTTACAATGGGCACTTCACAACCTCCTCCGTCAAGGTGACGTCATAGTACTCCTCCACGTGTACTCTCCTCCACCGCGTAAGAAGAAATCCACGGCGGCGCGTCTCCTCCGCCGTCACGGATACAATCTTGCTCTCTCTTTCCGTGAAATCTGCGACTCTTTCTTCAACACGAATACTGAGATCATTGTGAGAGAAGGAGATGATGATGGAAGAATGATTGCTCAAGTTGTCAAAGAGATTGGTGCTTCGATGCTTCTCGTTGGTCTCCATCAGAACAGCTTTCTTTACAGATGGGCAATAAGTGGGATCGATGTAGCGAGAAATTTCAATTGCAAAGTGATGGCTATAAAGCAGCCTTCACCGGAACTTTCGCCTCCGGTGAAGGTTAAGGGACACAAGACCTCTAAGGCGACGGCGACAGCGACTTCAGATTGTTTAACTAATTTTGACTTTTCACAAATTGAAATTTCTGGATTACAGGTTCCTGAGATTCCGACACCAACTAAAGTGCCATACAGATTATGTCCGAGTCCTCATGCCATACTATGGAGAACAAGGCCCCGGAGGAGATCCAAAGACCAATACGGTGTCGGTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

219

Amino Acids

24.66

Weight (kDa)

9.84

Isoelectric Point (pI)

55.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 5 - 137 1.4e-18 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 102
AccB7I CCANNNNNTGG 1 cut(s) 606
AccII CGCG 2 cut(s) 136, 160
AciI CCGC 4 cut(s) 47, 134, 155, 169
AclWI GGATC 2 cut(s) 374, 624
AcsI RAATTY 2 cut(s) 382, 525
AcuI CTGAAG 1 cut(s) 471
AcvI CACGTG 1 cut(s) 118
AcyI GRCGYC 1 cut(s) 99
AfaI GTAC 3 cut(s) 12, 108, 122
AfiI CCNNNNNNNGG 1 cut(s) 606
AflIII ACRYGT 1 cut(s) 117
AgsI TTSAA 3 cut(s) 226, 388, 524
AloI GAACNNNNNNTCC 2 cut(s) 525, 557
AluBI AGCT 1 cut(s) 339
AluI AGCT 1 cut(s) 339
Alw26I GTCTC 2 cut(s) 167, 329
AlwI GGATC 2 cut(s) 374, 624
AoxI GGCC 1 cut(s) 617
ApeKI GCWGC 1 cut(s) 412
ApoI RAATTY 2 cut(s) 382, 525
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 1 cut(s) 618
AsuC2I CCSGG 1 cut(s) 622
AsuHPI GGTGA 3 cut(s) 107, 411, 451
BaeGI GKGCMC 1 cut(s) 73
BbrPI CACGTG 1 cut(s) 118
BbvI GCAGC 1 cut(s) 424
BccI CCATC 4 cut(s) 260, 336, 345, 394
BceAI ACGGC 4 cut(s) 72, 156, 168, 489
BciVI GTATCC 1 cut(s) 173
BcnI CCSGG 1 cut(s) 622
BcoDI GTCTC 2 cut(s) 167, 329
BfuI GTATCC 1 cut(s) 173
BisI GCNGC 3 cut(s) 48, 156, 413
BlsI GCNGC 3 cut(s) 49, 157, 414
BmcAI AGTACT 1 cut(s) 108
Bme1390I CCNGG 1 cut(s) 622
BmgT120I GGNCC 1 cut(s) 618
BmiI GGNNCC 2 cut(s) 543, 620
BmrFI CCNGG 1 cut(s) 622
BmsI GCATC 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 267
BpuMI CCSGG 1 cut(s) 622
Bsa29I ATCGAT 1 cut(s) 369
BsaAI YACGTR 1 cut(s) 118
BsaHI GRCGYC 1 cut(s) 99
BsaI GGTCTC 1 cut(s) 329
BsaJI CCNNGG 2 cut(s) 150, 620
BsaWI WCCGGW 2 cut(s) 421, 436
Bsc4I CCNNNNNNNGG 1 cut(s) 606
BseCI ATCGAT 1 cut(s) 369
BseDI CCNNGG 2 cut(s) 150, 620
BseLI CCNNNNNNNGG 1 cut(s) 606
BseMII CTCAG 2 cut(s) 228, 537
BseRI GAGGAG 5 cut(s) 74, 101, 117, 155, 640
BseSI GKGCMC 1 cut(s) 73
BseXI GCAGC 1 cut(s) 424
Bsh1236I CGCG 2 cut(s) 136, 160
BshFI GGCC 1 cut(s) 619
BshVI ATCGAT 1 cut(s) 369
BsiSI CCGG 3 cut(s) 422, 437, 622
BslFI GGGAC 1 cut(s) 465
BslI CCNNNNNNNGG 1 cut(s) 606
BsmAI GTCTC 2 cut(s) 167, 329
BsmBI CGTCTC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 465
BsnI GGCC 1 cut(s) 619
Bso31I GGTCTC 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 3 cut(s) 240, 366, 629
BspACI CCGC 4 cut(s) 47, 134, 155, 169
BspANI GGCC 1 cut(s) 619
BspCNI CTCAG 2 cut(s) 229, 538
BspDI ATCGAT 1 cut(s) 369
BspFNI CGCG 2 cut(s) 136, 160
BspLI GGNNCC 2 cut(s) 543, 620
BspPI GGATC 2 cut(s) 374, 624
BspTNI GGTCTC 1 cut(s) 329
BssECI CCNNGG 2 cut(s) 150, 620
BssMI GATC 3 cut(s) 240, 366, 629
BssNI GRCGYC 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 647
BstACI GRCGYC 1 cut(s) 99
BstBAI YACGTR 1 cut(s) 118
BstDEI CTNAG 3 cut(s) 237, 465, 546
BstDSI CCRYGG 1 cut(s) 150
BstFNI CGCG 2 cut(s) 136, 160
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 3 cut(s) 243, 369, 632
BstMAI GTCTC 2 cut(s) 167, 329
BstMBI GATC 3 cut(s) 240, 366, 629
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 620
BstSLI GKGCMC 1 cut(s) 73
BstUI CGCG 2 cut(s) 136, 160
BstV1I GCAGC 1 cut(s) 424
BstX2I RGATCY 1 cut(s) 629
BstYI RGATCY 1 cut(s) 629
Bsu15I ATCGAT 1 cut(s) 369
BsuI GTATCC 1 cut(s) 173
BsuRI GGCC 1 cut(s) 619
BsuTUI ATCGAT 1 cut(s) 369
BtgI CCRYGG 1 cut(s) 150
CfoI GCGC 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 618
ClaI ATCGAT 1 cut(s) 369
CseI GACGC 1 cut(s) 149
Csp6I GTAC 3 cut(s) 11, 107, 121
CviAII CATG 1 cut(s) 596
CviJI RGCY 4 cut(s) 339, 404, 415, 619
CviKI_1 RGCY 4 cut(s) 339, 404, 415, 619
CviQI GTAC 3 cut(s) 11, 107, 121
DdeI CTNAG 3 cut(s) 237, 465, 546
DpnI GATC 3 cut(s) 242, 368, 631
DpnII GATC 3 cut(s) 240, 366, 629
EciI GGCGGA 1 cut(s) 158
Eco31I GGTCTC 1 cut(s) 329
Eco57I CTGAAG 1 cut(s) 471
Eco72I CACGTG 1 cut(s) 118
EcoO109I RGGNCCY 1 cut(s) 618
Esp3I CGTCTC 1 cut(s) 167
FaeI CATG 1 cut(s) 599
FaiI YATR 8 cut(s) 104, 407, 574, 583, 597, 602, 607, 658
FaqI GGGAC 1 cut(s) 465
FatI CATG 1 cut(s) 595
Fnu4HI GCNGC 3 cut(s) 48, 156, 413
Fsp4HI GCNGC 3 cut(s) 48, 156, 413
GlaI GCGC 1 cut(s) 159
GluI GCNGC 3 cut(s) 48, 156, 413
HaeIII GGCC 1 cut(s) 619
HapII CCGG 3 cut(s) 422, 437, 622
HgaI GACGC 1 cut(s) 149
HhaI GCGC 1 cut(s) 160
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 1 cut(s) 599
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HinfI GANTC 3 cut(s) 215, 550, 589
HpaII CCGG 3 cut(s) 422, 437, 622
HphI GGTGA 3 cut(s) 107, 411, 451
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 4 cut(s) 333, 490, 555, 588
Hpy188III TCNNGA 2 cut(s) 531, 545
Hpy8I GTNNAC 1 cut(s) 121
Hpy99I CGWCG 1 cut(s) 475
HpyAV CCTTC 3 cut(s) 248, 426, 436
HpyCH4III ACNGT 1 cut(s) 647
HpyCH4IV ACGT 2 cut(s) 99, 117
HpyCH4V TGCA 1 cut(s) 393
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 3 cut(s) 237, 465, 546
HpySE526I ACGT 2 cut(s) 99, 117
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 1 cut(s) 599
HspAI GCGC 1 cut(s) 158
Kzo9I GATC 3 cut(s) 240, 366, 629
LpnPI CCDG 6 cut(s) 435, 450, 516, 524, 558, 635
Lsp1109I GCAGC 1 cut(s) 424
LweI GCATC 1 cut(s) 300
MaeII ACGT 2 cut(s) 99, 117
MaeIII GTNAC 3 cut(s) 60, 95, 173
MalI GATC 3 cut(s) 242, 368, 631
MboI GATC 3 cut(s) 240, 366, 629
MboII GAAGA 5 cut(s) 17, 47, 154, 214, 282
MfeI CAATTG 1 cut(s) 388
MflI RGATCY 1 cut(s) 629
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 5 cut(s) 382, 388, 502, 519, 525
MlyI GAGTC 2 cut(s) 209, 598
MmeI TCCRAC 1 cut(s) 578
MseI TTAA 2 cut(s) 447, 497
MspI CCGG 3 cut(s) 422, 437, 622
MspR9I CCNGG 1 cut(s) 622
MunI CAATTG 1 cut(s) 388
MvnI CGCG 2 cut(s) 136, 160
MwoI GCNNNNNNNGC 1 cut(s) 56
NciI CCSGG 1 cut(s) 622
NdeII GATC 3 cut(s) 240, 366, 629
NlaIII CATG 1 cut(s) 599
NlaIV GGNNCC 2 cut(s) 543, 620
NmuCI GTSAC 2 cut(s) 95, 173
PcsI WCGNNNNNNNCGW 1 cut(s) 479
PfeI GAWTC 1 cut(s) 550
PflMI CCANNNNNTGG 1 cut(s) 606
PkrI GCNGC 3 cut(s) 49, 157, 414
PleI GAGTC 2 cut(s) 209, 597
PmaCI CACGTG 1 cut(s) 118
PmlI CACGTG 1 cut(s) 118
PpsI GAGTC 2 cut(s) 209, 597
Ppu21I YACGTR 1 cut(s) 118
PspCI CACGTG 1 cut(s) 118
PspN4I GGNNCC 2 cut(s) 543, 620
PspPI GGNCC 1 cut(s) 618
PsuI RGATCY 1 cut(s) 629
RsaI GTAC 3 cut(s) 12, 108, 122
RsaNI GTAC 3 cut(s) 11, 107, 121
SaqAI TTAA 2 cut(s) 447, 497
SatI GCNGC 3 cut(s) 48, 156, 413
Sau3AI GATC 3 cut(s) 240, 366, 629
Sau96I GGNCC 1 cut(s) 618
ScaI AGTACT 1 cut(s) 108
SchI GAGTC 2 cut(s) 209, 598
ScrFI CCNGG 1 cut(s) 622
SduI GDGCHC 1 cut(s) 73
SetI ASST 8 cut(s) 84, 97, 102, 120, 341, 447, 464, 543
SfaNI GCATC 1 cut(s) 300
SmlI CTYRAG 1 cut(s) 282
SmoI CTYRAG 1 cut(s) 282
Sse9I AATT 5 cut(s) 382, 388, 502, 519, 525
SsiI CCGC 4 cut(s) 47, 134, 155, 169
StyD4I CCNGG 1 cut(s) 620
TaaI ACNGT 1 cut(s) 647
TaiI ACGT 2 cut(s) 102, 120
TaqI TCGA 2 cut(s) 308, 369
TasI AATT 5 cut(s) 382, 388, 502, 519, 525
TatI WGTACW 2 cut(s) 106, 120
TauI GCSGC 2 cut(s) 50, 158
TfiI GAWTC 1 cut(s) 550
Tru1I TTAA 2 cut(s) 447, 497
Tru9I TTAA 2 cut(s) 447, 497
TseFI GTSAC 2 cut(s) 95, 173
TseI GCWGC 1 cut(s) 412
Tsp45I GTSAC 2 cut(s) 95, 173
TspDTI ATGAA 1 cut(s) 645
TspGWI ACGGA 4 cut(s) 28, 77, 191, 192
Van91I CCANNNNNTGG 1 cut(s) 606
XapI RAATTY 2 cut(s) 382, 525
ZraI GACGTC 1 cut(s) 100
ZrmI AGTACT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.