Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004836.1

Orthogroup ID

OG0003632

Physical Location & Seq

Genomic Coordinates Reverse (-)

31787 .. 35555

Gene Structure 3769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004836.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

atgacttgctttcagcatgcactactacttcctcctcctcctcctcctcctcctccaccaccaccaccaccaccacctcctcctccttctccaccactgccaccaacatccactcccccactaccatttccagtctatctctatctcggccgcaaggcctttctctctcctctctctctctctgcgcgcactcctaccactggagaccttgatctccggcctccaatttcacgacaccccaccatcaaacgatccagaaccaaatttcgatcaaaacccgagcccagcaccacgacgcatcgcctccggcctccgcacgcatccctcaaagccatcacggcgctgctctccagtcttcatcagtttccggcgactcctcaccacaccaccaccattggcgagctcagaggaagcccaaccgcatgcgcaccgtcgccggagacgccgagtctgtgcttctccattctcgcacctccaatccgaattgagttaaaccactgccatgaatggaatcagcacctctcaattgaccaaaaccctgtggccttagcctctagcttggaccaccgcagctcctccgccggatttccagaccgcctaattaggagcggaagccatggtgttagtttccatagaaatggattaagggtactattgtcggcaaaagctagcattggtattgagaaatcaatcttgttctcccttgtttgctacttcttctcatggataagtaaaggagatctagggggtttgattttggcaaaggttgaaatggttgtgacagaaggagatgaagaagggaagaagactacagcaatggtgagggagattgaggcttctgagcttgttcttggactccataatcacagctttctttacaagttggcaatggcgcaaggcaacaatactgcaaacaacttcatgaattgcagagtcctacccatcaagcaatcatcttcttcacaattgaggatcaacaaggccaatgctcctactgataaaaaagttttcaatacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

339

Amino Acids

36.93

Weight (kDa)

9.8

Isoelectric Point (pI)

64.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48960
fragaria_vesca	FvH4_5g12810 FvH4_5g12810
malus_domestica	MD06G1209900.v1.1 MD14G1220800.v1.1
prunus_persica	Prupe.5G216100_v2.0.a1
pyrus_communis	pycom06g18750 pycom14g18260 pycom14g18270
rosa_chinensis	RchiOBHm_Chr4g0434591 RchiOBHm_Chr5g0042351 RchiOBHm_Chr7g0184421
rosa_laevigata	RLG00000004976
rosa_multiflora	Rmu_sc0000263.1_g000010 Rmu_sc0004359.1_g000002 Rmu_sc0004836.1_g000007 Rmu_sc0009538.1_g000013
rosa_roxburghii	Rroxscaffold_3G00269630
rosa_rugosa	Rorug05G0114200
rosa_samantha	Rh1BG143000 Rh1BG224900 Rh1CG156500 Rh1CG168200 Rh1CG183200 Rh1DG252700 Rh4CG294500 Rh5AG209900 Rh5AG439700 Rh5DG299900 Rh7AG080100 Rh7BG067100 Rh7CG067400 Rh7DG067100
rosa_wichuraiana	Rw5G019120 Rw7G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	427
AccBSI	CCGCTC	1 cut(s)	609
AccII	CGCG	1 cut(s)	187
AciI	CCGC	7 cut(s)	151, 314, 420, 568, 579, 595, 609
AclWI	GGATC	2 cut(s)	246, 980
AcoI	YGGCCR	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	263
AcyI	GRCGYC	1 cut(s)	443
AfaI	GTAC	1 cut(s)	651
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgsI	TTSAA	2 cut(s)	770, 1012
AhdI	GACNNNNNGTC	1 cut(s)	447
AluBI	AGCT	6 cut(s)	403, 558, 573, 668, 844, 870
AluI	AGCT	6 cut(s)	403, 558, 573, 668, 844, 870
Alw21I	GWGCWC	1 cut(s)	405
Alw26I	GTCTC	2 cut(s)	198, 434
AlwI	GGATC	2 cut(s)	246, 980
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	6 cut(s)	148, 156, 218, 308, 543, 981
ApeKI	GCWGC	2 cut(s)	343, 570
ApoI	RAATTY	1 cut(s)	263
AspLEI	GCGC	5 cut(s)	187, 189, 343, 428, 895
AspS9I	GGNCC	1 cut(s)	562
AsuHPI	GGTGA	2 cut(s)	371, 832
AsuNHI	GCTAGC	1 cut(s)	668
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	562
BaeI	ACNNNNGTAYC	2 cut(s)	641, 674
BanII	GRGCYC	2 cut(s)	285, 405
BbsI	GAAGAC	2 cut(s)	347, 812
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	2 cut(s)	330, 582
BccI	CCATC	3 cut(s)	251, 341, 950
BceAI	ACGGC	1 cut(s)	354
BcoDI	GTCTC	2 cut(s)	198, 434
BfaI	CTAG	3 cut(s)	555, 669, 743
BfmI	CTRYAG	1 cut(s)	810
BfoI	RGCGCY	1 cut(s)	344
BglI	GCCNNNNNGGC	1 cut(s)	338
BglII	AGATCT	1 cut(s)	739
BisI	GCNGC	3 cut(s)	151, 344, 571
BlsI	GCNGC	3 cut(s)	152, 345, 572
Bme18I	GGWCC	1 cut(s)	562
BmeRI	GACNNNNNGTC	1 cut(s)	447
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	562
BmsI	GCATC	2 cut(s)	307, 329
BmtI	GCTAGC	1 cut(s)	672
BpiI	GAAGAC	2 cut(s)	347, 812
BpmI	CTGGAG	2 cut(s)	222, 334
Bpu10I	CCTNAGC	1 cut(s)	547
BsaHI	GRCGYC	1 cut(s)	443
BsaI	GGTCTC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	616
BsaXI	ACNNNNNCTCC	4 cut(s)	97, 127, 557, 587
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse1I	ACTGG	3 cut(s)	131, 205, 351
Bse3DI	GCAATG	2 cut(s)	822, 894
BseDI	CCNNGG	1 cut(s)	616
BseGI	GGATG	2 cut(s)	107, 320
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMI	GCAATG	2 cut(s)	822, 894
BseMII	CTCAG	2 cut(s)	418, 831
BseNI	ACTGG	3 cut(s)	131, 205, 351
BsePI	GCGCGC	1 cut(s)	185
BseX3I	CGGCCG	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	330, 582
BseYI	CCCAGC	1 cut(s)	284
Bsh1236I	CGCG	1 cut(s)	187
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	6 cut(s)	150, 158, 220, 310, 545, 983
BsiEI	CGRYCG	1 cut(s)	151
BsiHKAI	GWGCWC	1 cut(s)	405
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	5 cut(s)	217, 307, 368, 437, 582
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmAI	GTCTC	2 cut(s)	198, 434
BsmBI	CGTCTC	1 cut(s)	434
BsnI	GGCC	6 cut(s)	150, 158, 220, 310, 545, 983
Bso31I	GGTCTC	1 cut(s)	198
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	285, 405
Bsp143I	GATC	5 cut(s)	211, 251, 269, 739, 972
Bsp19I	CCATGG	1 cut(s)	616
BspACI	CCGC	7 cut(s)	151, 314, 420, 568, 579, 595, 609
BspANI	GGCC	6 cut(s)	150, 158, 220, 310, 545, 983
BspCNI	CTCAG	2 cut(s)	417, 832
BspFNI	CGCG	1 cut(s)	187
BspHI	TCATGA	1 cut(s)	921
BspOI	GCTAGC	1 cut(s)	672
BspPI	GGATC	2 cut(s)	246, 980
BspTNI	GGTCTC	1 cut(s)	198
BsrBI	CCGCTC	1 cut(s)	609
BsrDI	GCAATG	2 cut(s)	822, 894
BsrI	ACTGG	3 cut(s)	131, 205, 351
BssECI	CCNNGG	1 cut(s)	616
BssHII	GCGCGC	1 cut(s)	185
BssMI	GATC	5 cut(s)	211, 251, 269, 739, 972
BssNI	GRCGYC	1 cut(s)	443
BssT1I	CCWWGG	1 cut(s)	616
Bst4CI	ACNGT	1 cut(s)	432
BstACI	GRCGYC	1 cut(s)	443
BstC8I	GCNNGC	6 cut(s)	18, 187, 318, 401, 424, 670
BstDEI	CTNAG	3 cut(s)	404, 547, 840
BstDSI	CCRYGG	1 cut(s)	616
BstF5I	GGATG	2 cut(s)	107, 320
BstFNI	CGCG	1 cut(s)	187
BstH2I	RGCGCY	1 cut(s)	344
BstHHI	GCGC	5 cut(s)	187, 189, 343, 428, 895
BstKTI	GATC	5 cut(s)	214, 254, 272, 742, 975
BstMAI	GTCTC	2 cut(s)	198, 434
BstMBI	GATC	5 cut(s)	211, 251, 269, 739, 972
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 442
BstNSI	RCATGY	2 cut(s)	20, 426
BstSFI	CTRYAG	1 cut(s)	810
BstUI	CGCG	1 cut(s)	187
BstV1I	GCAGC	2 cut(s)	330, 582
BstV2I	GAAGAC	2 cut(s)	347, 812
BstX2I	RGATCY	1 cut(s)	739
BstXI	CCANNNNNNTGG	1 cut(s)	638
BstYI	RGATCY	1 cut(s)	739
BstZI	CGGCCG	1 cut(s)	148
BsuRI	GGCC	6 cut(s)	150, 158, 220, 310, 545, 983
BtgI	CCRYGG	1 cut(s)	616
BtgZI	GCGATG	1 cut(s)	284
BtsCI	GGATG	2 cut(s)	107, 320
BtsI	GCAGTG	2 cut(s)	95, 496
BtsIMutI	CAGTG	3 cut(s)	95, 198, 496
Cac8I	GCNNGC	6 cut(s)	18, 187, 318, 401, 424, 670
CciI	TCATGA	1 cut(s)	921
CfoI	GCGC	5 cut(s)	187, 189, 343, 428, 895
Cfr13I	GGNCC	1 cut(s)	562
CseI	GACGC	2 cut(s)	304, 451
Csp6I	GTAC	1 cut(s)	650
CspCI	CAANNNNNGTGG	2 cut(s)	376, 411
CviAII	CATG	6 cut(s)	17, 423, 503, 617, 723, 922
CviQI	GTAC	1 cut(s)	650
DdeI	CTNAG	3 cut(s)	404, 547, 840
DpnI	GATC	5 cut(s)	213, 253, 271, 741, 974
DpnII	GATC	5 cut(s)	211, 251, 269, 739, 972
DriI	GACNNNNNGTC	1 cut(s)	447
EaeI	YGGCCR	1 cut(s)	148
EagI	CGGCCG	1 cut(s)	148
Eam1105I	GACNNNNNGTC	1 cut(s)	447
EciI	GGCGGA	1 cut(s)	568
Ecl136II	GAGCTC	1 cut(s)	403
EclXI	CGGCCG	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	616
Eco147I	AGGCCT	1 cut(s)	158
Eco24I	GRGCYC	2 cut(s)	285, 405
Eco31I	GGTCTC	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	562
Eco52I	CGGCCG	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	403
Eco88I	CYCGRG	1 cut(s)	278
EcoICRI	GAGCTC	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	616
EcoT38I	GRGCYC	2 cut(s)	285, 405
ErhI	CCWWGG	1 cut(s)	616
Esp3I	CGTCTC	1 cut(s)	434
FaeI	CATG	6 cut(s)	20, 426, 506, 620, 726, 925
FaiI	YATR	8 cut(s)	18, 424, 504, 618, 633, 724, 861, 923
FatI	CATG	6 cut(s)	16, 422, 502, 616, 722, 921
Fnu4HI	GCNGC	3 cut(s)	151, 344, 571
FokI	GGATG	2 cut(s)	94, 307
FriOI	GRGCYC	2 cut(s)	285, 405
Fsp4HI	GCNGC	3 cut(s)	151, 344, 571
FspAI	RTGCGCAY	1 cut(s)	427
FspBI	CTAG	3 cut(s)	555, 669, 743
FspI	TGCGCA	1 cut(s)	427
GlaI	GCGC	5 cut(s)	186, 188, 342, 427, 894
GluI	GCNGC	3 cut(s)	151, 344, 571
GsaI	CCCAGC	1 cut(s)	288
GsuI	CTGGAG	2 cut(s)	222, 334
HaeII	RGCGCY	1 cut(s)	344
HaeIII	GGCC	6 cut(s)	150, 158, 220, 310, 545, 983
HapII	CCGG	5 cut(s)	217, 307, 368, 437, 582
HgaI	GACGC	2 cut(s)	304, 451
HhaI	GCGC	5 cut(s)	187, 189, 343, 428, 895
Hin1I	GRCGYC	1 cut(s)	443
Hin1II	CATG	6 cut(s)	20, 426, 506, 620, 726, 925
Hin6I	GCGC	5 cut(s)	185, 187, 341, 426, 893
HinP1I	GCGC	5 cut(s)	185, 187, 341, 426, 893
HinfI	GANTC	5 cut(s)	373, 448, 511, 855, 933
HpaII	CCGG	5 cut(s)	217, 307, 368, 437, 582
HphI	GGTGA	2 cut(s)	371, 832
Hpy188I	TCNGA	3 cut(s)	407, 482, 841
Hpy188III	TCNNGA	4 cut(s)	231, 255, 590, 922
Hpy99I	CGWCG	2 cut(s)	298, 436
HpyAV	CCTTC	3 cut(s)	96, 779, 791
HpyCH4III	ACNGT	1 cut(s)	432
HpyCH4V	TGCA	3 cut(s)	20, 911, 930
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 442
HpyF3I	CTNAG	3 cut(s)	404, 547, 840
Hsp92I	GRCGYC	1 cut(s)	443
Hsp92II	CATG	6 cut(s)	20, 426, 506, 620, 726, 925
HspAI	GCGC	5 cut(s)	185, 187, 341, 426, 893
Kzo9I	GATC	5 cut(s)	211, 251, 269, 739, 972
LmnI	GCTCC	3 cut(s)	578, 606, 994
Lsp1109I	GCAGC	2 cut(s)	330, 582
LweI	GCATC	2 cut(s)	307, 329
MaeI	CTAG	3 cut(s)	555, 669, 743
MaeIII	GTNAC	1 cut(s)	778
MalI	GATC	5 cut(s)	213, 253, 271, 741, 974
MbiI	CCGCTC	1 cut(s)	609
MboI	GATC	5 cut(s)	211, 251, 269, 739, 972
MboII	GAAGA	7 cut(s)	347, 709, 806, 814, 817, 948, 951
MfeI	CAATTG	2 cut(s)	525, 965
MflI	RGATCY	1 cut(s)	739
MhlI	GDGCHC	2 cut(s)	285, 405
MluCI	AATT	7 cut(s)	225, 263, 483, 525, 600, 925, 965
MlyI	GAGTC	4 cut(s)	367, 457, 849, 942
MseI	TTAA	2 cut(s)	491, 644
MslI	CAYNNNNRTG	2 cut(s)	501, 636
MspI	CCGG	5 cut(s)	217, 307, 368, 437, 582
MunI	CAATTG	2 cut(s)	525, 965
MvnI	CGCG	1 cut(s)	187
MwoI	GCNNNNNNNGC	2 cut(s)	338, 442
NcoI	CCATGG	1 cut(s)	616
NdeII	GATC	5 cut(s)	211, 251, 269, 739, 972
NheI	GCTAGC	1 cut(s)	668
NlaIII	CATG	6 cut(s)	20, 426, 506, 620, 726, 925
NmeAIII	GCCGAG	2 cut(s)	126, 471
NmuCI	GTSAC	1 cut(s)	778
NsbI	TGCGCA	1 cut(s)	427
NspI	RCATGY	2 cut(s)	20, 426
PaeI	GCATGC	2 cut(s)	20, 426
PagI	TCATGA	1 cut(s)	921
PauI	GCGCGC	1 cut(s)	185
PceI	AGGCCT	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	511
PkrI	GCNGC	3 cut(s)	152, 345, 572
PleI	GAGTC	4 cut(s)	367, 456, 849, 941
PpsI	GAGTC	4 cut(s)	367, 456, 849, 941
Psp124BI	GAGCTC	1 cut(s)	405
PspFI	CCCAGC	1 cut(s)	284
PspPI	GGNCC	1 cut(s)	562
PsuI	RGATCY	1 cut(s)	739
PteI	GCGCGC	1 cut(s)	185
RsaI	GTAC	1 cut(s)	651
RsaNI	GTAC	1 cut(s)	650
RseI	CAYNNNNRTG	2 cut(s)	501, 636
SacI	GAGCTC	1 cut(s)	405
SaqAI	TTAA	2 cut(s)	491, 644
SatI	GCNGC	3 cut(s)	151, 344, 571
Sau3AI	GATC	5 cut(s)	211, 251, 269, 739, 972
Sau96I	GGNCC	1 cut(s)	562
SchI	GAGTC	4 cut(s)	367, 457, 849, 942
SduI	GDGCHC	2 cut(s)	285, 405
SfaNI	GCATC	2 cut(s)	307, 329
SfcI	CTRYAG	1 cut(s)	810
SinI	GGWCC	1 cut(s)	562
SmiMI	CAYNNNNRTG	2 cut(s)	501, 636
SphI	GCATGC	2 cut(s)	20, 426
Sse9I	AATT	7 cut(s)	225, 263, 483, 525, 600, 925, 965
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	7 cut(s)	151, 314, 420, 568, 579, 595, 609
SspMI	CTAG	3 cut(s)	555, 669, 743
SstI	GAGCTC	1 cut(s)	405
StuI	AGGCCT	1 cut(s)	158
StyI	CCWWGG	1 cut(s)	616
TaaI	ACNGT	1 cut(s)	432
TaqI	TCGA	1 cut(s)	268
TasI	AATT	7 cut(s)	225, 263, 483, 525, 600, 925, 965
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	1 cut(s)	511
Tru1I	TTAA	2 cut(s)	491, 644
Tru9I	TTAA	2 cut(s)	491, 644
TscAI	CASTG	3 cut(s)	102, 205, 503
TseFI	GTSAC	1 cut(s)	778
TseI	GCWGC	2 cut(s)	343, 570
Tsp45I	GTSAC	1 cut(s)	778
TspDTI	ATGAA	5 cut(s)	347, 519, 807, 910, 938
TspRI	CASTG	3 cut(s)	102, 205, 503
VpaK11BI	GGWCC	1 cut(s)	562
XapI	RAATTY	1 cut(s)	263
XceI	RCATGY	2 cut(s)	20, 426
XspI	CTAG	3 cut(s)	555, 669, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.