FvH4_5g12810

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0003632
Physical Location & Seq
Reverse (-)
7250522 .. 7253567
3046 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g12810.t2

Sequence Viewer

Length: 423 bp
ATGCCAATACAGACAAAGGTTGAAATGGTTGTGACAGAAGGAGATGATGAAGGGAAGAAGATTGCAGCAATGGTGAGGGAGATTGGGGCTTCTGAGCTCGTTCTTGGACTCCATGATCACAGCTTTCTCTACAAGTTGGCAATGGCCCAAGGCAGCAATATTGCAAACAACTTCATGAATTGCAGAGTCCTAGCCATCAAGCAACCACCTTCTTCACCATTGAAGATCAACAAGGGCAGTGCTCCTACTGCAGCAACACCAGTCTTGGACAGTTCAACCAACTTAGACTTTTCGCAGATTGATGTCGCCGGTTTACAGATTCCTGATGTGCCTCCACCAAAAATTCCATACAAAATCTGCCCAAACCCTTATGCCATCATCTGGAAATCAAGGAGGGGAAGAAGAAGGAACTCAAGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

141

Amino Acids

15.35

Weight (kDa)

9.65

Isoelectric Point (pI)

53.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 4 - 118 2.1e-10 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 381
AcsI RAATTY 1 cut(s) 342
AfiI CCNNNNNNNGG 1 cut(s) 381
AgsI TTSAA 3 cut(s) 23, 223, 276
AluBI AGCT 2 cut(s) 97, 123
AluI AGCT 2 cut(s) 97, 123
Alw21I GWGCWC 2 cut(s) 99, 244
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 3 cut(s) 65, 153, 251
ApoI RAATTY 1 cut(s) 342
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 2 cut(s) 85, 207
BanII GRGCYC 1 cut(s) 99
Bbv12I GWGCWC 2 cut(s) 99, 244
BbvI GCAGC 3 cut(s) 77, 165, 263
BccI CCATC 2 cut(s) 203, 383
BclI TGATCA 1 cut(s) 115
BfaI CTAG 1 cut(s) 191
BfmI CTRYAG 1 cut(s) 249
BisI GCNGC 3 cut(s) 66, 154, 252
BlsI GCNGC 3 cut(s) 67, 155, 253
BmgT120I GGNCC 1 cut(s) 145
BpuEI CTTGAG 1 cut(s) 397
BsaJI CCNNGG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 381
Bse118I RCCGGY 1 cut(s) 308
Bse1I ACTGG 1 cut(s) 260
Bse3DI GCAATG 2 cut(s) 75, 147
BseDI CCNNGG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 381
BseMI GCAATG 2 cut(s) 75, 147
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 260
BseXI GCAGC 3 cut(s) 77, 165, 263
BshFI GGCC 1 cut(s) 146
BsiHKAI GWGCWC 2 cut(s) 99, 244
BsiSI CCGG 1 cut(s) 309
BslI CCNNNNNNNGG 1 cut(s) 381
BsnI GGCC 1 cut(s) 146
Bsp1286I GDGCHC 2 cut(s) 99, 244
Bsp143I GATC 2 cut(s) 115, 225
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 1 cut(s) 85
BspHI TCATGA 1 cut(s) 174
BspMAI CTGCAG 1 cut(s) 253
BsrDI GCAATG 2 cut(s) 75, 147
BsrFI RCCGGY 1 cut(s) 308
BsrI ACTGG 1 cut(s) 260
BssAI RCCGGY 1 cut(s) 308
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 2 cut(s) 115, 225
BssT1I CCWWGG 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 272
BstDEI CTNAG 2 cut(s) 93, 283
BstKTI GATC 2 cut(s) 118, 228
BstMBI GATC 2 cut(s) 115, 225
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 3 cut(s) 77, 165, 263
BsuRI GGCC 1 cut(s) 146
BtsI GCAGTG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 244
CciI TCATGA 1 cut(s) 174
Cfr10I RCCGGY 1 cut(s) 308
Cfr13I GGNCC 1 cut(s) 145
CviAII CATG 2 cut(s) 113, 175
CviJI RGCY 5 cut(s) 89, 97, 123, 146, 194
CviKI_1 RGCY 5 cut(s) 89, 97, 123, 146, 194
DdeI CTNAG 2 cut(s) 93, 283
DpnI GATC 2 cut(s) 117, 227
DpnII GATC 2 cut(s) 115, 225
Ecl136II GAGCTC 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 99
Eco53kI GAGCTC 1 cut(s) 97
EcoICRI GAGCTC 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 2 cut(s) 116, 178
FaiI YATR 4 cut(s) 114, 176, 349, 372
FatI CATG 2 cut(s) 112, 174
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 3 cut(s) 66, 154, 252
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 3 cut(s) 66, 154, 252
FspBI CTAG 1 cut(s) 191
GluI GCNGC 3 cut(s) 66, 154, 252
HaeIII GGCC 1 cut(s) 146
HapII CCGG 1 cut(s) 309
Hin1II CATG 2 cut(s) 116, 178
HinfI GANTC 3 cut(s) 108, 186, 319
HpaII CCGG 1 cut(s) 309
HphI GGTGA 2 cut(s) 85, 207
Hpy166II GTNNAC 1 cut(s) 314
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 3 cut(s) 175, 323, 382
Hpy8I GTNNAC 1 cut(s) 314
HpyAV CCTTC 4 cut(s) 32, 44, 219, 399
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4V TGCA 4 cut(s) 65, 164, 183, 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 2 cut(s) 93, 283
Hsp92II CATG 2 cut(s) 116, 178
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 2 cut(s) 115, 225
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 4 cut(s) 273, 322, 336, 367
Lsp1109I GCAGC 3 cut(s) 77, 165, 263
MaeI CTAG 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 117, 227
MboI GATC 2 cut(s) 115, 225
MboII GAAGA 6 cut(s) 67, 70, 204, 235, 411, 414
MhlI GDGCHC 2 cut(s) 99, 244
MluCI AATT 2 cut(s) 178, 342
MlyI GAGTC 2 cut(s) 102, 195
MnlI CCTC 3 cut(s) 69, 342, 387
MspI CCGG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 248
NdeII GATC 2 cut(s) 115, 225
NlaIII CATG 2 cut(s) 116, 178
NmuCI GTSAC 1 cut(s) 31
PagI TCATGA 1 cut(s) 174
PfeI GAWTC 1 cut(s) 319
PflMI CCANNNNNTGG 1 cut(s) 381
PkrI GCNGC 3 cut(s) 67, 155, 253
PleI GAGTC 2 cut(s) 102, 194
PpsI GAGTC 2 cut(s) 102, 194
Psp124BI GAGCTC 1 cut(s) 99
PspPI GGNCC 1 cut(s) 145
PstI CTGCAG 1 cut(s) 253
SacI GAGCTC 1 cut(s) 99
SatI GCNGC 3 cut(s) 66, 154, 252
Sau3AI GATC 2 cut(s) 115, 225
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 2 cut(s) 102, 195
SduI GDGCHC 2 cut(s) 99, 244
SetI ASST 4 cut(s) 21, 99, 125, 211
SfcI CTRYAG 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 412
SmoI CTYRAG 1 cut(s) 412
Sse9I AATT 2 cut(s) 178, 342
SspI AATATT 1 cut(s) 160
SspMI CTAG 1 cut(s) 191
SstI GAGCTC 1 cut(s) 99
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 272
TasI AATT 2 cut(s) 178, 342
TfiI GAWTC 1 cut(s) 319
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 3 cut(s) 65, 153, 251
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 3 cut(s) 63, 163, 191
TspRI CASTG 1 cut(s) 244
Van91I CCANNNNNTGG 1 cut(s) 381
XapI RAATTY 1 cut(s) 342
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.