Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003632

Physical Location & Seq

Genomic Coordinates Forward (+)

16964519 .. 16966860

Gene Structure 2342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G216100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGATGTGAGGAGAATAGTGGTGGTGGTTGAAGACGTGGAAGCAGCAAGAACAGCTCTGAAATGGGCACTTGACAACCTTGTTCGCTATGGGGACTTGATAACTCTGCTCCATGTTTTTTCAACCTCAAGATCCAGAAACAAGAACAAAACCAGGCTTCTCCGCTTGAAGGGCTTCCAGTTGGCCCTCTCTTTCAAAGACATCTGCAACACCTTCCCCAACACAAAGGTTGAAATGATTGTGACAGAAGGTGATCAAGATGGGAAGAAGATTGCAGCTGTGGTGACAGAGATCGGGGCTTCAACTCTTGTGCTTGGCCTCCATGATCACAGCTTTCTCTACAGGTTGGCAATGGCCCACGGCAGCAGCAGCATTGCAAACAAGTTGAATTGTAGAATTCTGGGCATCAAGCAACCACCACCCTCCTCCACACCATTACGTACGAGGACCAGTGGAACAACAACACCAGTCCTCGACAGTTGTTCAACCAACAATATGGACTTTTCACAGATTGACATTGCTGGATTACATGTCCCTGCTGTTCCTCCGCCAAAAGTCCCATACAGAATCTGCCCAAACCCTTATGCAATCATTTGGAAATCAAGGAAGTCAAGGAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

208

Amino Acids

22.98

Weight (kDa)

10.02

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48960
fragaria_vesca	FvH4_5g12810 FvH4_5g12810
malus_domestica	MD06G1209900.v1.1 MD14G1220800.v1.1
prunus_persica	Prupe.5G216100_v2.0.a1
pyrus_communis	pycom06g18750 pycom14g18260 pycom14g18270
rosa_chinensis	RchiOBHm_Chr4g0434591 RchiOBHm_Chr5g0042351 RchiOBHm_Chr7g0184421
rosa_laevigata	RLG00000004976
rosa_multiflora	Rmu_sc0000263.1_g000010 Rmu_sc0004359.1_g000002 Rmu_sc0004836.1_g000007 Rmu_sc0009538.1_g000013
rosa_roxburghii	Rroxscaffold_3G00269630
rosa_rugosa	Rorug05G0114200
rosa_samantha	Rh1BG143000 Rh1BG224900 Rh1CG156500 Rh1CG168200 Rh1CG183200 Rh1DG252700 Rh4CG294500 Rh5AG209900 Rh5AG439700 Rh5DG299900 Rh7AG080100 Rh7BG067100 Rh7CG067400 Rh7DG067100
rosa_wichuraiana	Rw5G019120 Rw7G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	163, 548
AclWI	GGATC	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	396
AfaI	GTAC	1 cut(s)	442
AfiI	CCNNNNNNNGG	1 cut(s)	169
AflIII	ACRYGT	1 cut(s)	529
AgsI	TTSAA	8 cut(s)	32, 123, 169, 196, 233, 303, 388, 486
AjiI	CACGTC	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	3 cut(s)	56, 278, 333
AluI	AGCT	3 cut(s)	56, 278, 333
AlwI	GGATC	1 cut(s)	126
AlwNI	CAGNNNCTG	1 cut(s)	570
AoxI	GGCC	3 cut(s)	183, 316, 354
ApeKI	GCWGC	5 cut(s)	44, 275, 363, 366, 369
ApoI	RAATTY	1 cut(s)	396
Asp700I	GAANNNNTTC	1 cut(s)	173
AspS9I	GGNCC	3 cut(s)	184, 355, 447
AsuHPI	GGTGA	2 cut(s)	263, 295
AvaII	GGWCC	1 cut(s)	447
BaeGI	GKGCMC	1 cut(s)	70
BbsI	GAAGAC	1 cut(s)	39
BbvI	GCAGC	5 cut(s)	56, 287, 375, 378, 381
BccI	CCATC	1 cut(s)	254
BceAI	ACGGC	1 cut(s)	376
BciT130I	CCWGG	1 cut(s)	154
BclI	TGATCA	2 cut(s)	253, 325
BfmI	CTRYAG	1 cut(s)	340
BisI	GCNGC	5 cut(s)	45, 276, 364, 367, 370
BlsI	GCNGC	5 cut(s)	46, 277, 365, 368, 371
Bme1390I	CCNGG	1 cut(s)	154
Bme18I	GGWCC	1 cut(s)	447
BmgBI	CACGTC	1 cut(s)	37
BmgT120I	GGNCC	3 cut(s)	184, 355, 447
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	414
BpiI	GAAGAC	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	112
BsaAI	YACGTR	1 cut(s)	440
BsaJI	CCNNGG	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse1I	ACTGG	3 cut(s)	178, 450, 467
Bse3DI	GCAATG	3 cut(s)	357, 372, 516
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	358
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMI	GCAATG	3 cut(s)	357, 372, 516
BseNI	ACTGG	3 cut(s)	178, 450, 467
BseRI	GAGGAG	2 cut(s)	25, 415
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	5 cut(s)	56, 287, 375, 378, 381
BshFI	GGCC	3 cut(s)	185, 318, 356
BsiWI	CGTACG	1 cut(s)	440
BslFI	GGGAC	3 cut(s)	107, 518, 542
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmFI	GGGAC	3 cut(s)	107, 518, 542
BsnI	GGCC	3 cut(s)	185, 318, 356
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	4 cut(s)	131, 253, 291, 325
BspACI	CCGC	2 cut(s)	163, 548
BspANI	GGCC	3 cut(s)	185, 318, 356
BspPI	GGATC	1 cut(s)	126
BsrDI	GCAATG	3 cut(s)	357, 372, 516
BsrI	ACTGG	3 cut(s)	178, 450, 467
BssECI	CCNNGG	1 cut(s)	358
BssMI	GATC	4 cut(s)	131, 253, 291, 325
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	1 cut(s)	479
BstBAI	YACGTR	1 cut(s)	440
BstDSI	CCRYGG	1 cut(s)	358
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	4 cut(s)	134, 256, 294, 328
BstMBI	GATC	4 cut(s)	131, 253, 291, 325
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 171, 369
BstNI	CCWGG	1 cut(s)	154
BstNSI	RCATGY	1 cut(s)	533
BstSCI	CCNGG	1 cut(s)	152
BstSFI	CTRYAG	1 cut(s)	340
BstSLI	GKGCMC	1 cut(s)	70
BstSNI	TACGTA	1 cut(s)	440
BstV1I	GCAGC	5 cut(s)	56, 287, 375, 378, 381
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	131
BstXI	CCANNNNNNTGG	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	131
BsuRI	GGCC	3 cut(s)	185, 318, 356
BtgI	CCRYGG	1 cut(s)	358
BtrI	CACGTC	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	457
CaiI	CAGNNNCTG	1 cut(s)	570
Cfr13I	GGNCC	3 cut(s)	184, 355, 447
Csp6I	GTAC	1 cut(s)	441
CviAII	CATG	3 cut(s)	113, 323, 530
CviJI	RGCY	9 cut(s)	56, 157, 174, 185, 278, 299, 318, 333, 356
CviKI_1	RGCY	9 cut(s)	56, 157, 174, 185, 278, 299, 318, 333, 356
CviQI	GTAC	1 cut(s)	441
DpnI	GATC	4 cut(s)	133, 255, 293, 327
DpnII	GATC	4 cut(s)	131, 253, 291, 325
EciI	GGCGGA	1 cut(s)	537
Eco105I	TACGTA	1 cut(s)	440
Eco47I	GGWCC	1 cut(s)	447
EcoRI	GAATTC	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	152
FaeI	CATG	3 cut(s)	116, 326, 533
FaiI	YATR	7 cut(s)	90, 114, 324, 497, 531, 562, 585
FaqI	GGGAC	3 cut(s)	107, 518, 542
FatI	CATG	3 cut(s)	112, 322, 529
FbaI	TGATCA	2 cut(s)	253, 325
Fnu4HI	GCNGC	5 cut(s)	45, 276, 364, 367, 370
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	5 cut(s)	45, 276, 364, 367, 370
GluI	GCNGC	5 cut(s)	45, 276, 364, 367, 370
HaeIII	GGCC	3 cut(s)	185, 318, 356
Hin1II	CATG	3 cut(s)	116, 326, 533
HinfI	GANTC	1 cut(s)	567
HphI	GGTGA	2 cut(s)	263, 295
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	3 cut(s)	129, 135, 257
HpyAV	CCTTC	3 cut(s)	163, 223, 242
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4IV	ACGT	2 cut(s)	36, 439
HpyCH4V	TGCA	4 cut(s)	207, 275, 377, 587
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 171, 369
HpySE526I	ACGT	2 cut(s)	36, 439
Hsp92II	CATG	3 cut(s)	116, 326, 533
Ksp22I	TGATCA	2 cut(s)	253, 325
Kzo9I	GATC	4 cut(s)	131, 253, 291, 325
LmnI	GCTCC	1 cut(s)	114
Lsp1109I	GCAGC	5 cut(s)	56, 287, 375, 378, 381
LweI	GCATC	1 cut(s)	414
MaeII	ACGT	2 cut(s)	36, 439
MaeIII	GTNAC	2 cut(s)	241, 283
MalI	GATC	4 cut(s)	133, 255, 293, 327
MboI	GATC	4 cut(s)	131, 253, 291, 325
MboII	GAAGA	3 cut(s)	44, 277, 280
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	2 cut(s)	388, 396
MnlI	CCTC	9 cut(s)	3, 136, 197, 329, 433, 436, 438, 482, 555
MroXI	GAANNNNTTC	1 cut(s)	173
MspA1I	CMGCKG	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	154
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	3 cut(s)	53, 171, 369
NdeII	GATC	4 cut(s)	131, 253, 291, 325
NlaIII	CATG	3 cut(s)	116, 326, 533
NmuCI	GTSAC	2 cut(s)	241, 283
NspI	RCATGY	1 cut(s)	533
PciI	ACATGT	1 cut(s)	529
PdmI	GAANNNNTTC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	567
Pfl23II	CGTACG	1 cut(s)	440
PkrI	GCNGC	5 cut(s)	46, 277, 365, 368, 371
Ppu21I	YACGTR	1 cut(s)	440
PscI	ACATGT	1 cut(s)	529
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PspLI	CGTACG	1 cut(s)	440
PspPI	GGNCC	3 cut(s)	184, 355, 447
PstNI	CAGNNNCTG	1 cut(s)	570
PsuI	RGATCY	1 cut(s)	131
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	1 cut(s)	442
RsaNI	GTAC	1 cut(s)	441
SatI	GCNGC	5 cut(s)	45, 276, 364, 367, 370
Sau3AI	GATC	4 cut(s)	131, 253, 291, 325
Sau96I	GGNCC	3 cut(s)	184, 355, 447
ScrFI	CCNGG	1 cut(s)	154
SduI	GDGCHC	1 cut(s)	70
SfaNI	GCATC	1 cut(s)	414
SfcI	CTRYAG	1 cut(s)	340
SinI	GGWCC	1 cut(s)	447
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
SnaBI	TACGTA	1 cut(s)	440
Sse9I	AATT	2 cut(s)	388, 396
SsiI	CCGC	2 cut(s)	163, 548
StyD4I	CCNGG	1 cut(s)	152
TaaI	ACNGT	1 cut(s)	479
TaiI	ACGT	2 cut(s)	39, 442
TaqI	TCGA	1 cut(s)	474
TasI	AATT	2 cut(s)	388, 396
TfiI	GAWTC	1 cut(s)	567
TscAI	CASTG	1 cut(s)	457
TseFI	GTSAC	2 cut(s)	241, 283
TseI	GCWGC	5 cut(s)	44, 275, 363, 366, 369
Tsp45I	GTSAC	2 cut(s)	241, 283
TspRI	CASTG	1 cut(s)	457
VpaK11BI	GGWCC	1 cut(s)	447
XapI	RAATTY	1 cut(s)	396
XceI	RCATGY	1 cut(s)	533
XmnI	GAANNNNTTC	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.