Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003632

Physical Location & Seq

Genomic Coordinates Reverse (-)

37656227 .. 37657181

Gene Structure 955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG299900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGTTGTGACAGAAGGAGATGAAGAAGGGAAGAAGATTGCAGCAATGGTGAGGGAGATTGGGGCTTCTGAGCTTGTTCTTGGACTCCATGATCACAGCTTTCTATACAAGTTGGCAATGGCCCAAGGCAGCAATACTGCAAACAACTTCATGAATTGCAGAGTCCTAGCCATCAAGCAACCATCTTCTTCACCATTGAGGATCAACAAGGCTAGTGCTTCTACTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

76

Amino Acids

8.16

Weight (kDa)

6.72

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48960
fragaria_vesca	FvH4_5g12810 FvH4_5g12810
malus_domestica	MD06G1209900.v1.1 MD14G1220800.v1.1
prunus_persica	Prupe.5G216100_v2.0.a1
pyrus_communis	pycom06g18750 pycom14g18260 pycom14g18270
rosa_chinensis	RchiOBHm_Chr4g0434591 RchiOBHm_Chr5g0042351 RchiOBHm_Chr7g0184421
rosa_laevigata	RLG00000004976
rosa_multiflora	Rmu_sc0000263.1_g000010 Rmu_sc0004359.1_g000002 Rmu_sc0004836.1_g000007 Rmu_sc0009538.1_g000013
rosa_roxburghii	Rroxscaffold_3G00269630
rosa_rugosa	Rorug05G0114200
rosa_samantha	Rh1BG143000 Rh1BG224900 Rh1CG156500 Rh1CG168200 Rh1CG183200 Rh1DG252700 Rh4CG294500 Rh5AG209900 Rh5AG439700 Rh5DG299900 Rh7AG080100 Rh7BG067100 Rh7CG067400 Rh7DG067100
rosa_wichuraiana	Rw5G019120 Rw7G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	209
AluBI	AGCT	2 cut(s)	73, 99
AluI	AGCT	2 cut(s)	73, 99
AlwI	GGATC	1 cut(s)	209
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	2 cut(s)	41, 129
AspS9I	GGNCC	1 cut(s)	121
AsuHPI	GGTGA	2 cut(s)	61, 183
BbvI	GCAGC	2 cut(s)	53, 141
BccI	CCATC	2 cut(s)	179, 190
BclI	TGATCA	1 cut(s)	91
BfaI	CTAG	2 cut(s)	167, 213
BisI	GCNGC	2 cut(s)	42, 130
BlsI	GCNGC	2 cut(s)	43, 131
BmgT120I	GGNCC	1 cut(s)	121
BsaJI	CCNNGG	1 cut(s)	124
Bse3DI	GCAATG	2 cut(s)	51, 123
BseDI	CCNNGG	1 cut(s)	124
BseMI	GCAATG	2 cut(s)	51, 123
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	53, 141
BshFI	GGCC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	122
Bsp143I	GATC	2 cut(s)	91, 201
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	61
BspHI	TCATGA	1 cut(s)	150
BspPI	GGATC	1 cut(s)	209
BsrDI	GCAATG	2 cut(s)	51, 123
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	91, 201
BssT1I	CCWWGG	1 cut(s)	124
BstDEI	CTNAG	1 cut(s)	69
BstKTI	GATC	2 cut(s)	94, 204
BstMBI	GATC	2 cut(s)	91, 201
BstV1I	GCAGC	2 cut(s)	53, 141
BsuRI	GGCC	1 cut(s)	122
CciI	TCATGA	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	121
CviAII	CATG	2 cut(s)	89, 151
CviJI	RGCY	6 cut(s)	65, 73, 99, 122, 170, 212
CviKI_1	RGCY	6 cut(s)	65, 73, 99, 122, 170, 212
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	2 cut(s)	93, 203
DpnII	GATC	2 cut(s)	91, 201
Eco130I	CCWWGG	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	2 cut(s)	92, 154
FaiI	YATR	3 cut(s)	90, 106, 152
FatI	CATG	2 cut(s)	88, 150
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	2 cut(s)	42, 130
Fsp4HI	GCNGC	2 cut(s)	42, 130
FspBI	CTAG	2 cut(s)	167, 213
GluI	GCNGC	2 cut(s)	42, 130
HaeIII	GGCC	1 cut(s)	122
Hin1II	CATG	2 cut(s)	92, 154
HinfI	GANTC	2 cut(s)	84, 162
HphI	GGTGA	2 cut(s)	61, 183
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	1 cut(s)	151
HpyAV	CCTTC	2 cut(s)	8, 20
HpyCH4V	TGCA	3 cut(s)	41, 140, 159
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	92, 154
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	91, 201
Lsp1109I	GCAGC	2 cut(s)	53, 141
MaeI	CTAG	2 cut(s)	167, 213
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	2 cut(s)	93, 203
MboI	GATC	2 cut(s)	91, 201
MboII	GAAGA	5 cut(s)	35, 43, 46, 177, 180
MluCI	AATT	1 cut(s)	154
MlyI	GAGTC	2 cut(s)	78, 171
MnlI	CCTC	2 cut(s)	45, 192
MseI	TTAA	1 cut(s)	229
NdeII	GATC	2 cut(s)	91, 201
NlaIII	CATG	2 cut(s)	92, 154
NmuCI	GTSAC	1 cut(s)	7
PagI	TCATGA	1 cut(s)	150
PkrI	GCNGC	2 cut(s)	43, 131
PleI	GAGTC	2 cut(s)	78, 170
PpsI	GAGTC	2 cut(s)	78, 170
PspPI	GGNCC	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	229
SatI	GCNGC	2 cut(s)	42, 130
Sau3AI	GATC	2 cut(s)	91, 201
Sau96I	GGNCC	1 cut(s)	121
SchI	GAGTC	2 cut(s)	78, 171
SetI	ASST	2 cut(s)	75, 101
Sse9I	AATT	1 cut(s)	154
SspMI	CTAG	2 cut(s)	167, 213
StyI	CCWWGG	1 cut(s)	124
TasI	AATT	1 cut(s)	154
Tru1I	TTAA	1 cut(s)	229
Tru9I	TTAA	1 cut(s)	229
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	2 cut(s)	41, 129
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	3 cut(s)	36, 139, 167
XspI	CTAG	2 cut(s)	167, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.