Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004359.1

Orthogroup ID

OG0003632

Physical Location & Seq

Genomic Coordinates Forward (+)

16363 .. 19421

Gene Structure 3059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004359.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgtcatctcatctcagatctatacttgcaaatggctcagatcgacctccatctttacctccttaccggctctctcacagaccaaaggaagccatggccacagtgcatgtcgtatcctgccctccccggcttggcagcgaatcggctgctggtaaatatccttactttcctggccaagaacccactttgcatggggatatcgatttgttgcttcaggcaaaggttgaaatggttgtgacagaaggagatgaagaagggaagaagactacagcaatggtgagggagattgaggcttctgagcttgttcttggactccataatcacagctttctttacaagttggcaatggcgcaaggcaacaatactgcaaacaacttcatgaattgcagagtcctacccatcaagcaatcatcttcttcacaattgaggatcaacaaggccaatgctcctactgataaaaaagttttcaatacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

158

Amino Acids

17.34

Weight (kDa)

8.93

Isoelectric Point (pI)

55.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48960
fragaria_vesca	FvH4_5g12810 FvH4_5g12810
malus_domestica	MD06G1209900.v1.1 MD14G1220800.v1.1
prunus_persica	Prupe.5G216100_v2.0.a1
pyrus_communis	pycom06g18750 pycom14g18260 pycom14g18270
rosa_chinensis	RchiOBHm_Chr4g0434591 RchiOBHm_Chr5g0042351 RchiOBHm_Chr7g0184421
rosa_laevigata	RLG00000004976
rosa_multiflora	Rmu_sc0000263.1_g000010 Rmu_sc0004359.1_g000002 Rmu_sc0004836.1_g000007 Rmu_sc0009538.1_g000013
rosa_roxburghii	Rroxscaffold_3G00269630
rosa_rugosa	Rorug05G0114200
rosa_samantha	Rh1BG143000 Rh1BG224900 Rh1CG156500 Rh1CG168200 Rh1CG183200 Rh1DG252700 Rh4CG294500 Rh5AG209900 Rh5AG439700 Rh5DG299900 Rh7AG080100 Rh7BG067100 Rh7CG067400 Rh7DG067100
rosa_wichuraiana	Rw5G019120 Rw7G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	437
AcoI	YGGCCR	2 cut(s)	96, 172
AcuI	CTGAAG	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	227, 469
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	2 cut(s)	301, 327
AluI	AGCT	2 cut(s)	301, 327
AlwI	GGATC	1 cut(s)	437
AoxI	GGCC	3 cut(s)	96, 172, 438
ApeKI	GCWGC	2 cut(s)	135, 146
AspLEI	GCGC	1 cut(s)	352
AsuC2I	CCSGG	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	289
BalI	TGGCCA	2 cut(s)	98, 174
BbsI	GAAGAC	1 cut(s)	269
BbvI	GCAGC	2 cut(s)	133, 147
BccI	CCATC	2 cut(s)	58, 407
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BciT130I	CCWGG	1 cut(s)	171
BciVI	GTATCC	1 cut(s)	124
BcnI	CCSGG	1 cut(s)	127
BfmI	CTRYAG	1 cut(s)	267
BfuI	GTATCC	1 cut(s)	124
BglII	AGATCT	1 cut(s)	17
BisI	GCNGC	2 cut(s)	136, 147
BlsI	GCNGC	2 cut(s)	137, 148
Bme1390I	CCNGG	2 cut(s)	127, 171
BmrFI	CCNGG	2 cut(s)	127, 171
BpiI	GAAGAC	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	127
Bsa29I	ATCGAT	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	93, 125
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse118I	RCCGGY	1 cut(s)	66
Bse3DI	GCAATG	2 cut(s)	279, 351
BseBI	CCWGG	1 cut(s)	171
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	2 cut(s)	93, 125
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMI	GCAATG	2 cut(s)	279, 351
BseMII	CTCAG	3 cut(s)	28, 51, 288
BseXI	GCAGC	2 cut(s)	133, 147
BshFI	GGCC	3 cut(s)	98, 174, 440
BshVI	ATCGAT	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	67, 127
BslI	CCNNNNNNNGG	1 cut(s)	131
BsnI	GGCC	3 cut(s)	98, 174, 440
Bsp143I	GATC	3 cut(s)	17, 40, 429
Bsp19I	CCATGG	1 cut(s)	93
BspANI	GGCC	3 cut(s)	98, 174, 440
BspCNI	CTCAG	3 cut(s)	27, 50, 289
BspDI	ATCGAT	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	378
BspPI	GGATC	1 cut(s)	437
BsrDI	GCAATG	2 cut(s)	279, 351
BsrFI	RCCGGY	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	2 cut(s)	93, 125
BssMI	GATC	3 cut(s)	17, 40, 429
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	103
BstDEI	CTNAG	3 cut(s)	14, 37, 297
BstDSI	CCRYGG	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	3 cut(s)	20, 43, 432
BstMBI	GATC	3 cut(s)	17, 40, 429
BstNI	CCWGG	1 cut(s)	171
BstNSI	RCATGY	1 cut(s)	110
BstSCI	CCNGG	2 cut(s)	125, 169
BstSFI	CTRYAG	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	133, 147
BstV2I	GAAGAC	1 cut(s)	269
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
Bsu15I	ATCGAT	1 cut(s)	201
BsuI	GTATCC	1 cut(s)	124
BsuRI	GGCC	3 cut(s)	98, 174, 440
BsuTUI	ATCGAT	1 cut(s)	201
BtgI	CCRYGG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	108
CciI	TCATGA	1 cut(s)	378
CfoI	GCGC	1 cut(s)	352
Cfr10I	RCCGGY	1 cut(s)	66
ClaI	ATCGAT	1 cut(s)	201
CviAII	CATG	4 cut(s)	94, 107, 191, 379
DdeI	CTNAG	3 cut(s)	14, 37, 297
DpnI	GATC	3 cut(s)	19, 42, 431
DpnII	GATC	3 cut(s)	17, 40, 429
EaeI	YGGCCR	2 cut(s)	96, 172
Eco130I	CCWWGG	1 cut(s)	93
Eco32I	GATATC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	169
EcoRV	GATATC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	4 cut(s)	97, 110, 194, 382
FaiI	YATR	6 cut(s)	23, 95, 108, 192, 318, 380
FatI	CATG	4 cut(s)	93, 106, 190, 378
Fnu4HI	GCNGC	2 cut(s)	136, 147
Fsp4HI	GCNGC	2 cut(s)	136, 147
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	2 cut(s)	136, 147
HaeIII	GGCC	3 cut(s)	98, 174, 440
HapII	CCGG	2 cut(s)	67, 127
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	4 cut(s)	97, 110, 194, 382
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HinfI	GANTC	3 cut(s)	140, 312, 390
HpaII	CCGG	2 cut(s)	67, 127
HphI	GGTGA	1 cut(s)	289
Hpy188I	TCNGA	3 cut(s)	17, 40, 298
Hpy188III	TCNNGA	1 cut(s)	379
HpyAV	CCTTC	2 cut(s)	236, 248
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	5 cut(s)	29, 106, 190, 368, 387
HpyF3I	CTNAG	3 cut(s)	14, 37, 297
Hsp92II	CATG	4 cut(s)	97, 110, 194, 382
HspAI	GCGC	1 cut(s)	350
Kzo9I	GATC	3 cut(s)	17, 40, 429
LmnI	GCTCC	1 cut(s)	451
LpnPI	CCDG	7 cut(s)	80, 130, 135, 140, 156, 183, 200
Lsp1109I	GCAGC	2 cut(s)	133, 147
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	3 cut(s)	19, 42, 431
MboI	GATC	3 cut(s)	17, 40, 429
MboII	GAAGA	5 cut(s)	263, 271, 274, 405, 408
MfeI	CAATTG	1 cut(s)	422
MflI	RGATCY	1 cut(s)	17
MlsI	TGGCCA	2 cut(s)	98, 174
MluCI	AATT	2 cut(s)	382, 422
MluNI	TGGCCA	2 cut(s)	98, 174
MlyI	GAGTC	2 cut(s)	306, 399
MnlI	CCTC	6 cut(s)	57, 69, 132, 273, 283, 420
Mox20I	TGGCCA	2 cut(s)	98, 174
MscI	TGGCCA	2 cut(s)	98, 174
Msp20I	TGGCCA	2 cut(s)	98, 174
MspI	CCGG	2 cut(s)	67, 127
MspR9I	CCNGG	2 cut(s)	127, 171
MunI	CAATTG	1 cut(s)	422
MvaI	CCWGG	1 cut(s)	171
NciI	CCSGG	1 cut(s)	127
NcoI	CCATGG	1 cut(s)	93
NdeII	GATC	3 cut(s)	17, 40, 429
NlaIII	CATG	4 cut(s)	97, 110, 194, 382
NmuCI	GTSAC	1 cut(s)	235
NspI	RCATGY	1 cut(s)	110
PagI	TCATGA	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	137, 148
PleI	GAGTC	2 cut(s)	306, 398
PpsI	GAGTC	2 cut(s)	306, 398
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	17
SatI	GCNGC	2 cut(s)	136, 147
Sau3AI	GATC	3 cut(s)	17, 40, 429
SchI	GAGTC	2 cut(s)	306, 399
ScrFI	CCNGG	2 cut(s)	127, 171
SetI	ASST	6 cut(s)	49, 61, 225, 303, 329, 476
SfcI	CTRYAG	1 cut(s)	267
Sse9I	AATT	2 cut(s)	382, 422
StyD4I	CCNGG	2 cut(s)	125, 169
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	103
TaqI	TCGA	2 cut(s)	43, 201
TasI	AATT	2 cut(s)	382, 422
TfiI	GAWTC	1 cut(s)	140
TscAI	CASTG	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	2 cut(s)	135, 146
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	3 cut(s)	264, 367, 395
TspRI	CASTG	1 cut(s)	108
XceI	RCATGY	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.