Rh1CG183200

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
40127961 .. 40138493
10533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG183200.1

Sequence Viewer

Length: 1293 bp
ATGTTGGCTTTATATTGGTATGAGTCAAAGTTCATCCAAAAAATTGTTACAGTGATTCAGGACAAGCTAGGTCATGTGCCCCTGACCGATGTCCAGGAGGTGTTACAGAAGAAGTTGTTGTTTATAAACCCTTACCTCGATGATGCCGAGGGGAAGCAACTGAAATTCCCAACTGTGAAGGCATGGCTCAATGAGCTTAAAGAAGCTGTCTATGATACCGAGGACCTATTGCAGGAGATCAAGACAGAAGCATTAAGACAAAAGATGGAACCCGAATCTGGAAGTAGCACGAGTAAGGCAAAGGTTGAAATGGTTGTGACAGAAGGAGATGAAGAAGGGAAGAAGACTACATCAATGGTGAGGGAGATTGAGGCTTCTGAGCTTGTTCTTGGACTCCATAATCACAGCTTTCTTTACAAGTTGGCAATGGCGCAAGGCAACAATACTGCAAATAACTTCATGAATTGCAGAGTCCTACCCATCAAGCAATCATCTTCTTCACAATTGAGGATCAACAAGGCCAACGCTCCTACTGATAAAAAAAATTGTATCTCCTTGCCACCATTGGGACAACTACCTTCCCTCAGAGAGCTTGAAATTCGGGAGTTGAGTGGGTGGCAAGAATGGTCTGATGTTGGAGGTGACGATATTGAAGGTGGGGTTTTTCCTAATCTAGAGAAACTTGACGTGGGTGACTGTCCCAATCTTACTGGGAGATTAGCATCAGACAGTCTCCCATCTCTTTTGTCTTTAAAGTCATGGAAGTGCCCAGAATTTGAATGGTTTCCGGAAGATGGATTCCCGTCAAAGTTAAAATCACTTTGGATCGGGTACTGTAAAAAAGTGAATGCAGAGAGCGTGCAGAATCTGAACAAGGGTCTCCGAACACTCACCTCTCTTGAAGAATTGTCACTTGATTTTGACAGCAGCGAAAAATTAGACTGGTTTGCGGAGGAGCTGTTTCCCAGCACTCTCACATATCTTAAGATTCGCCGTTTGAATTGTGAGACCATCGACGGCGCCAAGTGGTTTGGCCATCTCAACTCTCTTCAAAAATTGGCTATTTGGGACTGCCCTAGACTCCGGTGCTTGCCAGATAGTGGGCTATCCACTTCCCTTCAACACTTGGAGATTCTGGATTGCCCTGCTCTGCAGTGCTTGCCAGATAGTGGACTACCCTCTTCTCTTTCTGATCTACTTATCCGTGGTTGCCCTCTGCTTCAGAAACGGTGCCAAAGAGAGACGGGTGAAGATTGGCCCAAGATTGCTCACATCAAGGACTTAGCTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

430

Amino Acids

48.48

Weight (kDa)

5.22

Isoelectric Point (pI)

49.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 11 - 94 2.3e-15 Rx N-terminal domain
LRR_R13L1-DRL21 PF25019 273 - 380 7.3e-06 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 125
AccB1I GGYRCC 2 cut(s) 1019, 1230
AccB7I CCANNNNNTGG 2 cut(s) 1100, 1169
AccIII TCCGGA 1 cut(s) 787
AciI CCGC 1 cut(s) 950
AclWI GGATC 2 cut(s) 518, 833
AcoI YGGCCR 1 cut(s) 1033
AcsI RAATTY 3 cut(s) 164, 597, 773
AcuI CTGAAG 1 cut(s) 1205
AcyI GRCGYC 1 cut(s) 1020
AfaI GTAC 1 cut(s) 833
AfiI CCNNNNNNNGG 6 cut(s) 232, 278, 566, 794, 1100, 1169
AflII CTTAAG 1 cut(s) 983
AgsI TTSAA 8 cut(s) 308, 596, 653, 779, 902, 1000, 1052, 1121
AjiI CACGTC 1 cut(s) 688
AjnI CCWGG 1 cut(s) 93
AluBI AGCT 8 cut(s) 67, 196, 206, 382, 408, 592, 958, 1286
AluI AGCT 8 cut(s) 67, 196, 206, 382, 408, 592, 958, 1286
Alw26I GTCTC 4 cut(s) 737, 884, 1001, 1235
AlwI GGATC 2 cut(s) 518, 833
AlwNI CAGNNNCTG 1 cut(s) 868
Aor13HI TCCGGA 1 cut(s) 787
AoxI GGCC 3 cut(s) 519, 1033, 1256
ApeKI GCWGC 1 cut(s) 927
ApoI RAATTY 3 cut(s) 164, 597, 773
Asp700I GAANNNNTTC 1 cut(s) 783
AspLEI GCGC 2 cut(s) 433, 1022
AspS9I GGNCC 2 cut(s) 223, 1257
AsuHPI GGTGA 5 cut(s) 370, 653, 704, 883, 1259
AvaII GGWCC 1 cut(s) 223
BaeGI GKGCMC 2 cut(s) 81, 770
BalI TGGCCA 1 cut(s) 1035
BanI GGYRCC 2 cut(s) 1019, 1230
BauI CACGAG 1 cut(s) 289
BbsI GAAGAC 1 cut(s) 350
BbvI GCAGC 1 cut(s) 939
BccI CCATC 6 cut(s) 259, 488, 745, 788, 1019, 1044
BceAI ACGGC 2 cut(s) 978, 1033
BciT130I CCWGG 1 cut(s) 95
BcoDI GTCTC 4 cut(s) 737, 884, 1001, 1235
BfaI CTAG 3 cut(s) 68, 674, 1077
BfmI CTRYAG 1 cut(s) 1151
BfoI RGCGCY 1 cut(s) 1023
BfrI CTTAAG 1 cut(s) 983
BisI GCNGC 1 cut(s) 928
BlsI GCNGC 1 cut(s) 929
Bme1390I CCNGG 1 cut(s) 95
Bme18I GGWCC 1 cut(s) 223
BmgBI CACGTC 1 cut(s) 688
BmgT120I GGNCC 2 cut(s) 223, 1257
BmiI GGNNCC 3 cut(s) 270, 1021, 1232
BmrFI CCNGG 1 cut(s) 95
BmrI ACTGGG 1 cut(s) 720
BmsI GCATC 2 cut(s) 133, 731
BmuI ACTGGG 1 cut(s) 720
BoxI GACNNNNGTC 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 350
BsaBI GATNNNNATC 1 cut(s) 721
BsaHI GRCGYC 1 cut(s) 1020
BsaI GGTCTC 2 cut(s) 884, 1001
BsaJI CCNNGG 3 cut(s) 147, 219, 1204
BsaWI WCCGGW 2 cut(s) 787, 1083
BsaXI ACNNNNNCTCC 2 cut(s) 944, 974
Bsc4I CCNNNNNNNGG 6 cut(s) 232, 278, 566, 794, 1100, 1169
Bse1I ACTGG 2 cut(s) 715, 947
Bse3DI GCAATG 1 cut(s) 432
Bse8I GATNNNNATC 1 cut(s) 721
BseAI TCCGGA 1 cut(s) 787
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 3 cut(s) 147, 219, 1204
BseGI GGATG 1 cut(s) 33
BseJI GATNNNNATC 1 cut(s) 721
BseLI CCNNNNNNNGG 6 cut(s) 232, 278, 566, 794, 1100, 1169
BseMI GCAATG 1 cut(s) 432
BseMII CTCAG 2 cut(s) 369, 598
BseNI ACTGG 2 cut(s) 715, 947
BseRI GAGGAG 1 cut(s) 968
BseSI GKGCMC 2 cut(s) 81, 770
BseXI GCAGC 1 cut(s) 939
BseYI CCCAGC 1 cut(s) 965
BsgI GTGCAG 1 cut(s) 881
BshFI GGCC 3 cut(s) 521, 1035, 1258
BshNI GGYRCC 2 cut(s) 1019, 1230
BsiSI CCGG 2 cut(s) 788, 1084
BslFI GGGAC 3 cut(s) 582, 684, 1082
BslI CCNNNNNNNGG 6 cut(s) 232, 278, 566, 794, 1100, 1169
BsmAI GTCTC 4 cut(s) 737, 884, 1001, 1235
BsmBI CGTCTC 1 cut(s) 1235
BsmFI GGGAC 3 cut(s) 582, 684, 1082
BsmI GAATGC 1 cut(s) 853
BsnI GGCC 3 cut(s) 521, 1035, 1258
Bso31I GGTCTC 2 cut(s) 884, 1001
Bsp1286I GDGCHC 2 cut(s) 81, 770
Bsp13I TCCGGA 1 cut(s) 787
Bsp143I GATC 4 cut(s) 237, 510, 825, 1192
BspACI CCGC 1 cut(s) 950
BspANI GGCC 3 cut(s) 521, 1035, 1258
BspCNI CTCAG 2 cut(s) 370, 597
BspEI TCCGGA 1 cut(s) 787
BspHI TCATGA 1 cut(s) 459
BspLI GGNNCC 3 cut(s) 270, 1021, 1232
BspMAI CTGCAG 1 cut(s) 1155
BspPI GGATC 2 cut(s) 518, 833
BspT107I GGYRCC 2 cut(s) 1019, 1230
BspTI CTTAAG 1 cut(s) 983
BspTNI GGTCTC 2 cut(s) 884, 1001
BsrDI GCAATG 1 cut(s) 432
BsrI ACTGG 2 cut(s) 715, 947
BssECI CCNNGG 3 cut(s) 147, 219, 1204
BssMI GATC 4 cut(s) 237, 510, 825, 1192
BssNI GRCGYC 1 cut(s) 1020
BssSI CACGAG 1 cut(s) 289
Bst2BI CACGAG 1 cut(s) 289
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 6 cut(s) 52, 175, 698, 731, 836, 1230
Bst6I CTCTTC 2 cut(s) 1053, 1186
BstACI GRCGYC 1 cut(s) 1020
BstAFI CTTAAG 1 cut(s) 983
BstAPI GCANNNNNTGC 1 cut(s) 1159
BstC8I GCNNGC 3 cut(s) 860, 1091, 1160
BstDEI CTNAG 3 cut(s) 378, 584, 1282
BstDSI CCRYGG 1 cut(s) 1204
BstENI CCTNNNNNAGG 1 cut(s) 230
BstF5I GGATG 1 cut(s) 33
BstH2I RGCGCY 1 cut(s) 1023
BstHHI GCGC 2 cut(s) 433, 1022
BstKTI GATC 4 cut(s) 240, 513, 828, 1195
BstMAI GTCTC 4 cut(s) 737, 884, 1001, 1235
BstMBI GATC 4 cut(s) 237, 510, 825, 1192
BstMWI GCNNNNNNNGC 2 cut(s) 193, 1159
BstNI CCWGG 1 cut(s) 95
BstPAI GACNNNNGTC 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 93
BstSFI CTRYAG 1 cut(s) 1151
BstSLI GKGCMC 2 cut(s) 81, 770
BstV1I GCAGC 1 cut(s) 939
BstV2I GAAGAC 1 cut(s) 350
BsuRI GGCC 3 cut(s) 521, 1035, 1258
BtgI CCRYGG 1 cut(s) 1204
BtrI CACGTC 1 cut(s) 688
BtsCI GGATG 1 cut(s) 33
BtsI GCAGTG 1 cut(s) 1160
BtsIMutI CAGTG 2 cut(s) 57, 1160
Cac8I GCNNGC 3 cut(s) 860, 1091, 1160
CaiI CAGNNNCTG 1 cut(s) 868
CciI TCATGA 1 cut(s) 459
CfoI GCGC 2 cut(s) 433, 1022
Cfr13I GGNCC 2 cut(s) 223, 1257
Csp6I GTAC 1 cut(s) 832
CviAII CATG 4 cut(s) 74, 183, 460, 759
CviQI GTAC 1 cut(s) 832
DdeI CTNAG 3 cut(s) 378, 584, 1282
DinI GGCGCC 1 cut(s) 1021
DpnI GATC 4 cut(s) 239, 512, 827, 1194
DpnII GATC 4 cut(s) 237, 510, 825, 1192
DraI TTTAAA 1 cut(s) 753
EaeI YGGCCR 1 cut(s) 1033
Eam1104I CTCTTC 2 cut(s) 1053, 1186
EarI CTCTTC 2 cut(s) 1053, 1186
Eco31I GGTCTC 2 cut(s) 884, 1001
Eco47I GGWCC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 1205
EcoNI CCTNNNNNAGG 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 93
EgeI GGCGCC 1 cut(s) 1021
EheI GGCGCC 1 cut(s) 1021
Esp3I CGTCTC 1 cut(s) 1235
FaeI CATG 4 cut(s) 77, 186, 463, 762
FaqI GGGAC 3 cut(s) 582, 684, 1082
FatI CATG 4 cut(s) 73, 182, 459, 758
Fnu4HI GCNGC 1 cut(s) 928
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 928
FspBI CTAG 3 cut(s) 68, 674, 1077
GlaI GCGC 2 cut(s) 432, 1021
GluI GCNGC 1 cut(s) 928
GsaI CCCAGC 1 cut(s) 969
HaeII RGCGCY 1 cut(s) 1023
HaeIII GGCC 3 cut(s) 521, 1035, 1258
HapII CCGG 2 cut(s) 788, 1084
HhaI GCGC 2 cut(s) 433, 1022
Hin1I GRCGYC 1 cut(s) 1020
Hin1II CATG 4 cut(s) 77, 186, 463, 762
Hin6I GCGC 2 cut(s) 431, 1020
HinP1I GCGC 2 cut(s) 431, 1020
HpaII CCGG 2 cut(s) 788, 1084
HphI GGTGA 5 cut(s) 370, 653, 704, 883, 1259
Hpy166II GTNNAC 1 cut(s) 1172
Hpy188I TCNGA 8 cut(s) 379, 587, 631, 727, 870, 884, 1192, 1224
Hpy188III TCNNGA 9 cut(s) 59, 241, 279, 460, 602, 674, 788, 899, 1136
Hpy8I GTNNAC 1 cut(s) 1172
Hpy99I CGWCG 1 cut(s) 1019
HpyAV CCTTC 6 cut(s) 172, 317, 329, 588, 647, 1127
HpyCH4III ACNGT 6 cut(s) 52, 175, 698, 731, 836, 1230
HpyCH4IV ACGT 1 cut(s) 687
HpyCH4V TGCA 6 cut(s) 232, 449, 468, 851, 862, 1153
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 1159
HpyF3I CTNAG 3 cut(s) 378, 584, 1282
HpySE526I ACGT 1 cut(s) 687
Hsp92I GRCGYC 1 cut(s) 1020
Hsp92II CATG 4 cut(s) 77, 186, 463, 762
HspAI GCGC 2 cut(s) 431, 1020
KasI GGCGCC 1 cut(s) 1019
Kpn2I TCCGGA 1 cut(s) 787
Kzo9I GATC 4 cut(s) 237, 510, 825, 1192
LmnI GCTCC 2 cut(s) 532, 955
Lsp1109I GCAGC 1 cut(s) 939
LweI GCATC 2 cut(s) 133, 731
MaeI CTAG 3 cut(s) 68, 674, 1077
MaeII ACGT 1 cut(s) 687
MaeIII GTNAC 6 cut(s) 46, 102, 316, 641, 692, 909
MalI GATC 4 cut(s) 239, 512, 827, 1194
MboI GATC 4 cut(s) 237, 510, 825, 1192
MfeI CAATTG 1 cut(s) 503
MhlI GDGCHC 2 cut(s) 81, 770
MlsI TGGCCA 1 cut(s) 1035
MluNI TGGCCA 1 cut(s) 1035
Mly113I GGCGCC 1 cut(s) 1020
MlyI GAGTC 4 cut(s) 32, 387, 480, 1074
MmeI TCCRAC 1 cut(s) 616
Mox20I TGGCCA 1 cut(s) 1035
MroI TCCGGA 1 cut(s) 787
MroXI GAANNNNTTC 1 cut(s) 783
MscI TGGCCA 1 cut(s) 1035
MseI TTAA 5 cut(s) 198, 254, 752, 812, 984
MslI CAYNNNNRTG 1 cut(s) 763
Msp20I TGGCCA 1 cut(s) 1035
MspCI CTTAAG 1 cut(s) 983
MspI CCGG 2 cut(s) 788, 1084
MspR9I CCNGG 1 cut(s) 95
MunI CAATTG 1 cut(s) 503
Mva1269I GAATGC 1 cut(s) 853
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 2 cut(s) 193, 1159
NarI GGCGCC 1 cut(s) 1020
NdeII GATC 4 cut(s) 237, 510, 825, 1192
NlaIII CATG 4 cut(s) 77, 186, 463, 762
NlaIV GGNNCC 3 cut(s) 270, 1021, 1232
NmeAIII GCCGAG 1 cut(s) 172
NmuCI GTSAC 4 cut(s) 316, 641, 692, 909
PagI TCATGA 1 cut(s) 459
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PctI GAATGC 1 cut(s) 853
PdmI GAANNNNTTC 1 cut(s) 783
PfeI GAWTC 6 cut(s) 55, 275, 798, 865, 988, 1132
PflMI CCANNNNNTGG 2 cut(s) 1100, 1169
PfoI TCCNGGA 1 cut(s) 93
PkrI GCNGC 1 cut(s) 929
PleI GAGTC 4 cut(s) 31, 387, 479, 1074
PluTI GGCGCC 1 cut(s) 1023
PpsI GAGTC 4 cut(s) 31, 387, 479, 1074
PpuMI RGGWCCY 1 cut(s) 223
PshAI GACNNNNGTC 1 cut(s) 89
PsiI TTATAA 1 cut(s) 125
Psp5II RGGWCCY 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 93
PspFI CCCAGC 1 cut(s) 965
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 3 cut(s) 270, 1021, 1232
PspPI GGNCC 2 cut(s) 223, 1257
PspPPI RGGWCCY 1 cut(s) 223
PstI CTGCAG 1 cut(s) 1155
PstNI CAGNNNCTG 1 cut(s) 868
RsaI GTAC 1 cut(s) 833
RsaNI GTAC 1 cut(s) 832
RseI CAYNNNNRTG 1 cut(s) 763
SaqAI TTAA 5 cut(s) 198, 254, 752, 812, 984
SatI GCNGC 1 cut(s) 928
Sau3AI GATC 4 cut(s) 237, 510, 825, 1192
Sau96I GGNCC 2 cut(s) 223, 1257
SchI GAGTC 4 cut(s) 32, 387, 480, 1074
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 2 cut(s) 81, 770
SfaNI GCATC 2 cut(s) 133, 731
SfcI CTRYAG 1 cut(s) 1151
SfoI GGCGCC 1 cut(s) 1021
SinI GGWCC 1 cut(s) 223
SmiMI CAYNNNNRTG 1 cut(s) 763
SmlI CTYRAG 1 cut(s) 983
SmoI CTYRAG 1 cut(s) 983
SsiI CCGC 1 cut(s) 950
SspDI GGCGCC 1 cut(s) 1019
SspMI CTAG 3 cut(s) 68, 674, 1077
StyD4I CCNGG 1 cut(s) 93
TaaI ACNGT 6 cut(s) 52, 175, 698, 731, 836, 1230
TaiI ACGT 1 cut(s) 690
TaqI TCGA 2 cut(s) 138, 1014
TaqII GACCGA 1 cut(s) 101
TfiI GAWTC 6 cut(s) 55, 275, 798, 865, 988, 1132
Tru1I TTAA 5 cut(s) 198, 254, 752, 812, 984
Tru9I TTAA 5 cut(s) 198, 254, 752, 812, 984
TscAI CASTG 2 cut(s) 57, 1160
TseFI GTSAC 4 cut(s) 316, 641, 692, 909
TseI GCWGC 1 cut(s) 927
Tsp45I GTSAC 4 cut(s) 316, 641, 692, 909
TspDTI ATGAA 4 cut(s) 22, 345, 448, 476
TspGWI ACGGA 1 cut(s) 1193
TspRI CASTG 2 cut(s) 57, 1160
Van91I CCANNNNNTGG 2 cut(s) 1100, 1169
Vha464I CTTAAG 1 cut(s) 983
VpaK11BI GGWCC 1 cut(s) 223
XagI CCTNNNNNAGG 1 cut(s) 230
XapI RAATTY 3 cut(s) 164, 597, 773
XbaI TCTAGA 1 cut(s) 673
XcmI CCANNNNNNNNNTGG 1 cut(s) 777
XmnI GAANNNNTTC 1 cut(s) 783
XspI CTAG 3 cut(s) 68, 674, 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.