RchiOBHm_Chr7g0184421

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0003632
Physical Location & Seq
Forward (+)
4970569 .. 4973585
3017 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16454

Sequence Viewer

Length: 621 bp
ATGGATGTGAGGAGAATAGTAGTGGTAGTTGAAGATGTTGAAGCCGCAAGAACAGCTCTGAAATGGGCTCTCCAAAACCTCATACGATTTGGGGATTTCATTACTCTTCTCCATGTTTTCCCAAGTTCAAGATCTAAGAACAAGAACAAAACCAGGCTTCTGCGCTTGAAAGGGTTCAAATTGGCCCTGTCCTTCAAGGACATCTGCGACTCCTTCCCCAATACAAAGGTTGAAATGGTTGTGACAGAAGGAGATGAAGAAGGGAAGAAGATTGCAGCAATGGTGAGGGAGATTGGGGCTTCTGAGCTTGTTCTTGGACTCCATGATCACAGCTTTCTTTACAGGTTGGCAATGGCCCAGGGCAACAATATTGCAAACAACTTCATGAATTGCAGAGTCCTAGCCATCAAGCAACCTTCTTCTTCACCTTTGAGGATCAACAAGGCCAGTGCTCCTGCTCCAGCAACACCAGTCTTGGACTGTTCAACCAACTTAGACTTTTCGCAGATTGATGTTGCTGGTTTACAGATTCCTGATGTGCCTCCACCAAAAATTCCATACAAAATCTGCCCAAACCCTTATGGCATCATCTGGAAATCAAGGAGGTCAAGAAGGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

206

Amino Acids

23.06

Weight (kDa)

9.84

Isoelectric Point (pI)

53.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 4 - 118 1.5e-10 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 45
AclWI GGATC 1 cut(s) 443
AcsI RAATTY 1 cut(s) 552
AgsI TTSAA 8 cut(s) 32, 41, 129, 169, 178, 196, 233, 486
AjnI CCWGG 2 cut(s) 152, 357
AluBI AGCT 3 cut(s) 56, 307, 333
AluI AGCT 3 cut(s) 56, 307, 333
Alw21I GWGCWC 1 cut(s) 454
AlwI GGATC 1 cut(s) 443
AoxI GGCC 3 cut(s) 183, 354, 444
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 1 cut(s) 552
Asp700I GAANNNNTTC 1 cut(s) 173
AspLEI GCGC 1 cut(s) 165
AspS9I GGNCC 2 cut(s) 184, 355
AsuHPI GGTGA 2 cut(s) 295, 417
BanII GRGCYC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 454
BbvI GCAGC 1 cut(s) 287
BccI CCATC 1 cut(s) 413
BciT130I CCWGG 2 cut(s) 154, 359
BclI TGATCA 1 cut(s) 325
BfaI CTAG 1 cut(s) 401
BglII AGATCT 1 cut(s) 131
BisI GCNGC 2 cut(s) 45, 276
BlsI GCNGC 2 cut(s) 46, 277
Bme1390I CCNGG 2 cut(s) 154, 359
BmgT120I GGNCC 2 cut(s) 184, 355
BmrFI CCNGG 2 cut(s) 154, 359
BmsI GCATC 1 cut(s) 594
BpmI CTGGAG 1 cut(s) 444
BsaJI CCNNGG 2 cut(s) 357, 358
Bse1I ACTGG 2 cut(s) 447, 470
Bse3DI GCAATG 2 cut(s) 285, 357
BseBI CCWGG 2 cut(s) 154, 359
BseDI CCNNGG 2 cut(s) 357, 358
BseGI GGATG 1 cut(s) 10
BseMI GCAATG 2 cut(s) 285, 357
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 2 cut(s) 447, 470
BseRI GAGGAG 1 cut(s) 25
BseXI GCAGC 1 cut(s) 287
BshFI GGCC 3 cut(s) 185, 356, 446
BsiHKAI GWGCWC 1 cut(s) 454
BsnI GGCC 3 cut(s) 185, 356, 446
Bsp1286I GDGCHC 2 cut(s) 70, 454
Bsp143I GATC 3 cut(s) 131, 325, 435
BspACI CCGC 1 cut(s) 45
BspANI GGCC 3 cut(s) 185, 356, 446
BspCNI CTCAG 1 cut(s) 295
BspHI TCATGA 1 cut(s) 384
BspPI GGATC 1 cut(s) 443
BsrDI GCAATG 2 cut(s) 285, 357
BsrI ACTGG 2 cut(s) 447, 470
BssECI CCNNGG 2 cut(s) 357, 358
BssMI GATC 3 cut(s) 131, 325, 435
Bst2UI CCWGG 2 cut(s) 154, 359
Bst4CI ACNGT 1 cut(s) 482
Bst6I CTCTTC 1 cut(s) 111
BstDEI CTNAG 3 cut(s) 135, 303, 493
BstF5I GGATG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 3 cut(s) 134, 328, 438
BstMBI GATC 3 cut(s) 131, 325, 435
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 2 cut(s) 154, 359
BstSCI CCNGG 2 cut(s) 152, 357
BstV1I GCAGC 1 cut(s) 287
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BsuRI GGCC 3 cut(s) 185, 356, 446
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 454
CciI TCATGA 1 cut(s) 384
CfoI GCGC 1 cut(s) 165
Cfr13I GGNCC 2 cut(s) 184, 355
CviAII CATG 3 cut(s) 113, 323, 385
DdeI CTNAG 3 cut(s) 135, 303, 493
DpnI GATC 3 cut(s) 133, 327, 437
DpnII GATC 3 cut(s) 131, 325, 435
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 70
EcoRII CCWGG 2 cut(s) 152, 357
EcoT38I GRGCYC 1 cut(s) 70
FaeI CATG 3 cut(s) 116, 326, 388
FaiI YATR 6 cut(s) 83, 114, 324, 386, 559, 582
FatI CATG 3 cut(s) 112, 322, 384
FbaI TGATCA 1 cut(s) 325
Fnu4HI GCNGC 2 cut(s) 45, 276
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 2 cut(s) 45, 276
FspBI CTAG 1 cut(s) 401
GlaI GCGC 1 cut(s) 164
GluI GCNGC 2 cut(s) 45, 276
GsuI CTGGAG 1 cut(s) 444
HaeIII GGCC 3 cut(s) 185, 356, 446
HhaI GCGC 1 cut(s) 165
Hin1II CATG 3 cut(s) 116, 326, 388
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HinfI GANTC 4 cut(s) 209, 318, 396, 529
HphI GGTGA 2 cut(s) 295, 417
Hpy166II GTNNAC 1 cut(s) 524
Hpy188I TCNGA 2 cut(s) 60, 304
Hpy188III TCNNGA 5 cut(s) 129, 385, 533, 592, 609
Hpy8I GTNNAC 1 cut(s) 524
HpyAV CCTTC 6 cut(s) 202, 223, 242, 254, 426, 606
HpyCH4III ACNGT 1 cut(s) 482
HpyCH4V TGCA 3 cut(s) 275, 374, 393
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 3 cut(s) 135, 303, 493
Hsp92II CATG 3 cut(s) 116, 326, 388
HspAI GCGC 1 cut(s) 163
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 3 cut(s) 131, 325, 435
LmnI GCTCC 2 cut(s) 457, 463
Lsp1109I GCAGC 1 cut(s) 287
LweI GCATC 1 cut(s) 594
MaeI CTAG 1 cut(s) 401
MaeIII GTNAC 1 cut(s) 241
MalI GATC 3 cut(s) 133, 327, 437
MboI GATC 3 cut(s) 131, 325, 435
MboII GAAGA 7 cut(s) 44, 98, 269, 277, 280, 411, 414
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 2 cut(s) 70, 454
MluCI AATT 3 cut(s) 179, 388, 552
MlyI GAGTC 3 cut(s) 203, 312, 405
MnlI CCTC 7 cut(s) 3, 89, 279, 426, 552, 597, 609
MroXI GAANNNNTTC 1 cut(s) 173
MspR9I CCNGG 2 cut(s) 154, 359
MvaI CCWGG 2 cut(s) 154, 359
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 3 cut(s) 131, 325, 435
NlaIII CATG 3 cut(s) 116, 326, 388
NmuCI GTSAC 1 cut(s) 241
PagI TCATGA 1 cut(s) 384
PasI CCCWGGG 1 cut(s) 358
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 529
PkrI GCNGC 2 cut(s) 46, 277
PleI GAGTC 3 cut(s) 203, 312, 404
PpsI GAGTC 3 cut(s) 203, 312, 404
Psp6I CCWGG 2 cut(s) 152, 357
PspGI CCWGG 2 cut(s) 152, 357
PspPI GGNCC 2 cut(s) 184, 355
PsuI RGATCY 1 cut(s) 131
SatI GCNGC 2 cut(s) 45, 276
Sau3AI GATC 3 cut(s) 131, 325, 435
Sau96I GGNCC 2 cut(s) 184, 355
SchI GAGTC 3 cut(s) 203, 312, 405
ScrFI CCNGG 2 cut(s) 154, 359
SduI GDGCHC 2 cut(s) 70, 454
SfaNI GCATC 1 cut(s) 594
Sse9I AATT 3 cut(s) 179, 388, 552
SsiI CCGC 1 cut(s) 45
SspI AATATT 1 cut(s) 370
SspMI CTAG 1 cut(s) 401
StyD4I CCNGG 2 cut(s) 152, 357
TaaI ACNGT 1 cut(s) 482
TasI AATT 3 cut(s) 179, 388, 552
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 529
TscAI CASTG 1 cut(s) 454
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 4 cut(s) 88, 270, 373, 401
TspRI CASTG 1 cut(s) 454
XapI RAATTY 1 cut(s) 552
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.