Rroxscaffold_3G00269630

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003632
Physical Location & Seq
Reverse (-)
62460088 .. 62463020
2933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00269630.1

Sequence Viewer

Length: 735 bp
ATGGATGTGAGGAGAATAGTAGTGGTAGTTGAAGATGTTGAAGCTGCAAGAACAGCTCTGAAATGGGCTCTCCAAAACCTCATACGATTTGGGGATTTCATTACTCTTCTCCATGTTTTCCGAAGTTCAAGATCTAAGAACAAGAACAAAACCAGGCTTCTGCGCTTGAAAGGGTTCAAATTGGCCCTGTCTTTCAAGGACATCTGCGACTCCTTCCCCAATGTAAGCAAAAAGCTTAGTTTGGATTCGAAGTTTCATACTTTATGTGTTATTCGGACAAAGGTTGAAATGGTTGTGACAGAAGGAGATGAAGAAGGGAAGAAGATTGCAGCAATGGTGAGGGAGATTGGGGCTTCTGAGCTTGTTCTTGGACTCCACGATCACAGCTTTCTTTACAAATGTTTGGGGGTTGTTGATATTGGGATAAGAATTCAATGCATGATGAAACAGTCAGAGATAAGGTTGGCAATGGCCCAGGGCAACAATATTGCAAACAACTTCATGAATTGCAGAGTCCTAGCCATCAAGCAACCTCCTTGTTCACCTTTGAGGATCAACAAGGCCAGTGCTCCTACTCCAGCAATACCAGTCTTGGACTGTTCAACCAACTTAGACTTTTCGCAGATTGATGTTGCTGGTTTACAGATTCCTGATGTGCCTCCACCAAAAATTCCATACAAAATCTGCCCAAACCCTTACGCAATCATCTGGAAATCAAGGAGATCAAGGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

244

Amino Acids

27.45

Weight (kDa)

9.74

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 4 - 133 7.7e-08 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 560
AcsI RAATTY 2 cut(s) 429, 669
AgsI TTSAA 9 cut(s) 32, 41, 129, 169, 178, 196, 287, 434, 603
AjnI CCWGG 2 cut(s) 152, 474
AluBI AGCT 5 cut(s) 44, 56, 235, 361, 387
AluI AGCT 5 cut(s) 44, 56, 235, 361, 387
Alw21I GWGCWC 1 cut(s) 571
AlwI GGATC 1 cut(s) 560
AoxI GGCC 3 cut(s) 183, 471, 561
ApeKI GCWGC 2 cut(s) 44, 329
ApoI RAATTY 2 cut(s) 429, 669
Asp700I GAANNNNTTC 1 cut(s) 173
AspLEI GCGC 1 cut(s) 165
AspS9I GGNCC 2 cut(s) 184, 472
AsuHPI GGTGA 2 cut(s) 349, 534
AsuII TTCGAA 1 cut(s) 248
BanII GRGCYC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 571
BbvI GCAGC 2 cut(s) 31, 341
BccI CCATC 1 cut(s) 530
BciT130I CCWGG 2 cut(s) 154, 476
BfaI CTAG 1 cut(s) 518
BglII AGATCT 1 cut(s) 131
BisI GCNGC 2 cut(s) 45, 330
BlsI GCNGC 2 cut(s) 46, 331
Bme1390I CCNGG 2 cut(s) 154, 476
BmgT120I GGNCC 2 cut(s) 184, 472
BmrFI CCNGG 2 cut(s) 154, 476
BpmI CTGGAG 1 cut(s) 561
Bpu14I TTCGAA 1 cut(s) 248
BsaJI CCNNGG 2 cut(s) 474, 475
Bse1I ACTGG 2 cut(s) 564, 587
Bse3DI GCAATG 2 cut(s) 339, 474
BseBI CCWGG 2 cut(s) 154, 476
BseDI CCNNGG 2 cut(s) 474, 475
BseGI GGATG 1 cut(s) 10
BseMI GCAATG 2 cut(s) 339, 474
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 2 cut(s) 564, 587
BseRI GAGGAG 1 cut(s) 25
BseXI GCAGC 2 cut(s) 31, 341
BshFI GGCC 3 cut(s) 185, 473, 563
BsiHKAI GWGCWC 1 cut(s) 571
BsnI GGCC 3 cut(s) 185, 473, 563
Bsp119I TTCGAA 1 cut(s) 248
Bsp1286I GDGCHC 2 cut(s) 70, 571
Bsp143I GATC 4 cut(s) 131, 379, 552, 722
BspANI GGCC 3 cut(s) 185, 473, 563
BspCNI CTCAG 1 cut(s) 349
BspHI TCATGA 1 cut(s) 501
BspPI GGATC 1 cut(s) 560
BspT104I TTCGAA 1 cut(s) 248
BsrDI GCAATG 2 cut(s) 339, 474
BsrI ACTGG 2 cut(s) 564, 587
BssECI CCNNGG 2 cut(s) 474, 475
BssMI GATC 4 cut(s) 131, 379, 552, 722
Bst2UI CCWGG 2 cut(s) 154, 476
Bst4CI ACNGT 2 cut(s) 450, 599
Bst6I CTCTTC 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 248
BstDEI CTNAG 4 cut(s) 135, 236, 357, 610
BstF5I GGATG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 4 cut(s) 134, 382, 555, 725
BstMBI GATC 4 cut(s) 131, 379, 552, 722
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 2 cut(s) 154, 476
BstSCI CCNGG 2 cut(s) 152, 474
BstV1I GCAGC 2 cut(s) 31, 341
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BsuRI GGCC 3 cut(s) 185, 473, 563
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 571
CciI TCATGA 1 cut(s) 501
CfoI GCGC 1 cut(s) 165
Cfr13I GGNCC 2 cut(s) 184, 472
CviAII CATG 3 cut(s) 113, 439, 502
DdeI CTNAG 4 cut(s) 135, 236, 357, 610
DpnI GATC 4 cut(s) 133, 381, 554, 724
DpnII GATC 4 cut(s) 131, 379, 552, 722
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 70
EcoRI GAATTC 1 cut(s) 429
EcoRII CCWGG 2 cut(s) 152, 474
EcoT22I ATGCAT 1 cut(s) 440
EcoT38I GRGCYC 1 cut(s) 70
FaeI CATG 3 cut(s) 116, 442, 505
FaiI YATR 7 cut(s) 83, 114, 258, 265, 440, 503, 676
FatI CATG 3 cut(s) 112, 438, 501
Fnu4HI GCNGC 2 cut(s) 45, 330
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 2 cut(s) 45, 330
FspBI CTAG 1 cut(s) 518
GlaI GCGC 1 cut(s) 164
GluI GCNGC 2 cut(s) 45, 330
GsuI CTGGAG 1 cut(s) 561
HaeIII GGCC 3 cut(s) 185, 473, 563
HhaI GCGC 1 cut(s) 165
Hin1II CATG 3 cut(s) 116, 442, 505
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 5 cut(s) 209, 245, 372, 513, 646
HphI GGTGA 2 cut(s) 349, 534
Hpy166II GTNNAC 2 cut(s) 542, 641
Hpy188I TCNGA 5 cut(s) 60, 122, 276, 358, 454
Hpy188III TCNNGA 4 cut(s) 129, 502, 650, 709
Hpy8I GTNNAC 2 cut(s) 542, 641
HpyAV CCTTC 3 cut(s) 223, 296, 308
HpyCH4III ACNGT 2 cut(s) 450, 599
HpyCH4V TGCA 5 cut(s) 47, 329, 438, 491, 510
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 4 cut(s) 135, 236, 357, 610
Hsp92II CATG 3 cut(s) 116, 442, 505
HspAI GCGC 1 cut(s) 163
Kzo9I GATC 4 cut(s) 131, 379, 552, 722
LmnI GCTCC 1 cut(s) 574
Lsp1109I GCAGC 2 cut(s) 31, 341
MaeI CTAG 1 cut(s) 518
MaeIII GTNAC 1 cut(s) 295
MalI GATC 4 cut(s) 133, 381, 554, 724
MboI GATC 4 cut(s) 131, 379, 552, 722
MboII GAAGA 5 cut(s) 44, 98, 323, 331, 334
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 2 cut(s) 70, 571
MluCI AATT 4 cut(s) 179, 429, 505, 669
MlyI GAGTC 3 cut(s) 203, 366, 522
MnlI CCTC 7 cut(s) 3, 89, 333, 543, 543, 669, 723
Mph1103I ATGCAT 1 cut(s) 440
MroXI GAANNNNTTC 1 cut(s) 173
MspR9I CCNGG 2 cut(s) 154, 476
MvaI CCWGG 2 cut(s) 154, 476
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 4 cut(s) 131, 379, 552, 722
NlaIII CATG 3 cut(s) 116, 442, 505
NmuCI GTSAC 1 cut(s) 295
NsiI ATGCAT 1 cut(s) 440
NspV TTCGAA 1 cut(s) 248
PagI TCATGA 1 cut(s) 501
PasI CCCWGGG 1 cut(s) 475
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 2 cut(s) 245, 646
PkrI GCNGC 2 cut(s) 46, 331
PleI GAGTC 3 cut(s) 203, 366, 521
PpsI GAGTC 3 cut(s) 203, 366, 521
Psp6I CCWGG 2 cut(s) 152, 474
PspGI CCWGG 2 cut(s) 152, 474
PspPI GGNCC 2 cut(s) 184, 472
PsuI RGATCY 1 cut(s) 131
SatI GCNGC 2 cut(s) 45, 330
Sau3AI GATC 4 cut(s) 131, 379, 552, 722
Sau96I GGNCC 2 cut(s) 184, 472
SchI GAGTC 3 cut(s) 203, 366, 522
ScrFI CCNGG 2 cut(s) 154, 476
SduI GDGCHC 2 cut(s) 70, 571
SfuI TTCGAA 1 cut(s) 248
Sse9I AATT 4 cut(s) 179, 429, 505, 669
SspI AATATT 1 cut(s) 487
SspMI CTAG 1 cut(s) 518
StyD4I CCNGG 2 cut(s) 152, 474
TaaI ACNGT 2 cut(s) 450, 599
TaqI TCGA 1 cut(s) 248
TasI AATT 4 cut(s) 179, 429, 505, 669
TfiI GAWTC 2 cut(s) 245, 646
TscAI CASTG 1 cut(s) 571
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 2 cut(s) 44, 329
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 6 cut(s) 88, 245, 324, 458, 490, 518
TspRI CASTG 1 cut(s) 571
XapI RAATTY 2 cut(s) 429, 669
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 1 cut(s) 518
Zsp2I ATGCAT 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.