Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003632

Physical Location & Seq

Genomic Coordinates Forward (+)

46667754 .. 46670632

Gene Structure 2879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG252700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGCCAATACAGAAAAAGGTTGAAATGGTTGTGACAGAAGGAGATGAAGAAGGGAAGAAGATTGCAGCAATGGTGAGGGAGATTGGGGCTTCTGAGCTTGTTCTTGGACTCCATGATCACAGCTTTCTTTACAAGTTGGCAATGGCCCAAGGCAGCAATACTGCAAACAACTTCATGAATTGCAGAGTCCTAGCCATCAAGCAACCATCTTCTTCACCATTGAGGATCAACAAGGCTAGTGCTTCTACTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

84

Amino Acids

9.12

Weight (kDa)

7.9

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48960
fragaria_vesca	FvH4_5g12810 FvH4_5g12810
malus_domestica	MD06G1209900.v1.1 MD14G1220800.v1.1
prunus_persica	Prupe.5G216100_v2.0.a1
pyrus_communis	pycom06g18750 pycom14g18260 pycom14g18270
rosa_chinensis	RchiOBHm_Chr4g0434591 RchiOBHm_Chr5g0042351 RchiOBHm_Chr7g0184421
rosa_laevigata	RLG00000004976
rosa_multiflora	Rmu_sc0000263.1_g000010 Rmu_sc0004359.1_g000002 Rmu_sc0004836.1_g000007 Rmu_sc0009538.1_g000013
rosa_roxburghii	Rroxscaffold_3G00269630
rosa_rugosa	Rorug05G0114200
rosa_samantha	Rh1BG143000 Rh1BG224900 Rh1CG156500 Rh1CG168200 Rh1CG183200 Rh1DG252700 Rh4CG294500 Rh5AG209900 Rh5AG439700 Rh5DG299900 Rh7AG080100 Rh7BG067100 Rh7CG067400 Rh7DG067100
rosa_wichuraiana	Rw5G019120 Rw7G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	23
AluBI	AGCT	2 cut(s)	97, 123
AluI	AGCT	2 cut(s)	97, 123
AlwI	GGATC	1 cut(s)	233
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	2 cut(s)	65, 153
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	2 cut(s)	85, 207
BbvI	GCAGC	2 cut(s)	77, 165
BccI	CCATC	2 cut(s)	203, 214
BclI	TGATCA	1 cut(s)	115
BfaI	CTAG	2 cut(s)	191, 237
BisI	GCNGC	2 cut(s)	66, 154
BlsI	GCNGC	2 cut(s)	67, 155
BmgT120I	GGNCC	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	148
Bse3DI	GCAATG	2 cut(s)	75, 147
BseDI	CCNNGG	1 cut(s)	148
BseMI	GCAATG	2 cut(s)	75, 147
BseMII	CTCAG	1 cut(s)	84
BseXI	GCAGC	2 cut(s)	77, 165
BshFI	GGCC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	146
Bsp143I	GATC	2 cut(s)	115, 225
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	1 cut(s)	85
BspHI	TCATGA	1 cut(s)	174
BspPI	GGATC	1 cut(s)	233
BsrDI	GCAATG	2 cut(s)	75, 147
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	2 cut(s)	115, 225
BssT1I	CCWWGG	1 cut(s)	148
BstDEI	CTNAG	1 cut(s)	93
BstKTI	GATC	2 cut(s)	118, 228
BstMBI	GATC	2 cut(s)	115, 225
BstV1I	GCAGC	2 cut(s)	77, 165
BsuRI	GGCC	1 cut(s)	146
CciI	TCATGA	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	145
CviAII	CATG	2 cut(s)	113, 175
CviJI	RGCY	6 cut(s)	89, 97, 123, 146, 194, 236
CviKI_1	RGCY	6 cut(s)	89, 97, 123, 146, 194, 236
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	2 cut(s)	117, 227
DpnII	GATC	2 cut(s)	115, 225
Eco130I	CCWWGG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	2 cut(s)	116, 178
FaiI	YATR	2 cut(s)	114, 176
FatI	CATG	2 cut(s)	112, 174
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	2 cut(s)	66, 154
Fsp4HI	GCNGC	2 cut(s)	66, 154
FspBI	CTAG	2 cut(s)	191, 237
GluI	GCNGC	2 cut(s)	66, 154
HaeIII	GGCC	1 cut(s)	146
Hin1II	CATG	2 cut(s)	116, 178
HinfI	GANTC	2 cut(s)	108, 186
HphI	GGTGA	2 cut(s)	85, 207
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	1 cut(s)	175
HpyAV	CCTTC	2 cut(s)	32, 44
HpyCH4V	TGCA	3 cut(s)	65, 164, 183
HpyF3I	CTNAG	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	116, 178
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	115, 225
Lsp1109I	GCAGC	2 cut(s)	77, 165
MaeI	CTAG	2 cut(s)	191, 237
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	2 cut(s)	117, 227
MboI	GATC	2 cut(s)	115, 225
MboII	GAAGA	5 cut(s)	59, 67, 70, 201, 204
MluCI	AATT	1 cut(s)	178
MlyI	GAGTC	2 cut(s)	102, 195
MnlI	CCTC	2 cut(s)	69, 216
MseI	TTAA	1 cut(s)	253
NdeII	GATC	2 cut(s)	115, 225
NlaIII	CATG	2 cut(s)	116, 178
NmuCI	GTSAC	1 cut(s)	31
PagI	TCATGA	1 cut(s)	174
PkrI	GCNGC	2 cut(s)	67, 155
PleI	GAGTC	2 cut(s)	102, 194
PpsI	GAGTC	2 cut(s)	102, 194
PspPI	GGNCC	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	253
SatI	GCNGC	2 cut(s)	66, 154
Sau3AI	GATC	2 cut(s)	115, 225
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	2 cut(s)	102, 195
SetI	ASST	3 cut(s)	21, 99, 125
Sse9I	AATT	1 cut(s)	178
SspMI	CTAG	2 cut(s)	191, 237
StyI	CCWWGG	1 cut(s)	148
TasI	AATT	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	253
Tru9I	TTAA	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	2 cut(s)	65, 153
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	3 cut(s)	60, 163, 191
XspI	CTAG	2 cut(s)	191, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.