Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003632

Physical Location & Seq

Genomic Coordinates Forward (+)

36833838 .. 36837398

Gene Structure 3561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG168200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGTTGTGACAAAAGGAGATGAAGAAGGGAAGAAGATTGCAGCAATGGTGAGGGAGATTGGGCCTTCTGAGCTTGTTCTTGGACTCCATGATCACAGTTTTCTTTACAAGGAAGAACCTTCTTATTGGAGCCAACTTTGCTTATGCTGCATCCGCTTGCAATCTCTTTGCCCCAACAGTTACAATACTTCAAGGAATACGAGGAACTACTATGTCAATCCTTTTGTTAACGAACTCTACACTCCTGACCAGTACGGCAACATCCTCGTTTGTGCTTTCACATGCTTTATTACGGATGTGTATGGTTTGGGAGTAAGGAAAATAGGTGTGACATCAAGATTCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0048046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

115

Amino Acids

13.1

Weight (kDa)

6.7

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48960
fragaria_vesca	FvH4_5g12810 FvH4_5g12810
malus_domestica	MD06G1209900.v1.1 MD14G1220800.v1.1
prunus_persica	Prupe.5G216100_v2.0.a1
pyrus_communis	pycom06g18750 pycom14g18260 pycom14g18270
rosa_chinensis	RchiOBHm_Chr4g0434591 RchiOBHm_Chr5g0042351 RchiOBHm_Chr7g0184421
rosa_laevigata	RLG00000004976
rosa_multiflora	Rmu_sc0000263.1_g000010 Rmu_sc0004359.1_g000002 Rmu_sc0004836.1_g000007 Rmu_sc0009538.1_g000013
rosa_roxburghii	Rroxscaffold_3G00269630
rosa_rugosa	Rorug05G0114200
rosa_samantha	Rh1BG143000 Rh1BG224900 Rh1CG156500 Rh1CG168200 Rh1CG183200 Rh1DG252700 Rh4CG294500 Rh5AG209900 Rh5AG439700 Rh5DG299900 Rh7AG080100 Rh7BG067100 Rh7CG067400 Rh7DG067100
rosa_wichuraiana	Rw5G019120 Rw7G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	154
AfaI	GTAC	1 cut(s)	254
AgsI	TTSAA	1 cut(s)	192
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
AoxI	GGCC	1 cut(s)	62
ApeKI	GCWGC	2 cut(s)	41, 147
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	2 cut(s)	61, 334
BbvI	GCAGC	2 cut(s)	53, 134
BceAI	ACGGC	1 cut(s)	271
BcgI	CGANNNNNNTGC	2 cut(s)	247, 281
BclI	TGATCA	1 cut(s)	91
BisI	GCNGC	2 cut(s)	42, 148
BlsI	GCNGC	2 cut(s)	43, 149
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	131
BmsI	GCATC	1 cut(s)	159
Bse1I	ACTGG	1 cut(s)	250
Bse3DI	GCAATG	1 cut(s)	51
BseGI	GGATG	3 cut(s)	150, 261, 301
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	250
BseXI	GCAGC	2 cut(s)	53, 134
BshFI	GGCC	1 cut(s)	64
BsnI	GGCC	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	91
BspACI	CCGC	1 cut(s)	154
BspANI	GGCC	1 cut(s)	64
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	250
BssMI	GATC	1 cut(s)	91
Bst4CI	ACNGT	2 cut(s)	98, 179
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	1 cut(s)	69
BstF5I	GGATG	3 cut(s)	150, 261, 301
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 138, 147, 153
BstNSI	RCATGY	1 cut(s)	285
BstV1I	GCAGC	2 cut(s)	53, 134
BsuRI	GGCC	1 cut(s)	64
BtsCI	GGATG	3 cut(s)	150, 261, 301
Cac8I	GCNNGC	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	2 cut(s)	89, 282
CviJI	RGCY	3 cut(s)	64, 73, 132
CviKI_1	RGCY	3 cut(s)	64, 73, 132
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
FaeI	CATG	2 cut(s)	92, 285
FaiI	YATR	5 cut(s)	90, 145, 213, 283, 303
FatI	CATG	2 cut(s)	88, 281
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	2 cut(s)	42, 148
FokI	GGATG	3 cut(s)	137, 248, 308
Fsp4HI	GCNGC	2 cut(s)	42, 148
GluI	GCNGC	2 cut(s)	42, 148
HaeIII	GGCC	1 cut(s)	64
Hin1II	CATG	2 cut(s)	92, 285
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	2 cut(s)	84, 339
HpaI	GTTAAC	1 cut(s)	229
HphI	GGTGA	2 cut(s)	61, 334
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	2 cut(s)	245, 336
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	3 cut(s)	20, 75, 129
HpyCH4III	ACNGT	2 cut(s)	98, 179
HpyCH4V	TGCA	3 cut(s)	41, 150, 160
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 138, 147, 153
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	92, 285
Ksp22I	TGATCA	1 cut(s)	91
KspAI	GTTAAC	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	1 cut(s)	129
LpnPI	CCDG	2 cut(s)	258, 263
Lsp1109I	GCAGC	2 cut(s)	53, 134
LweI	GCATC	1 cut(s)	159
MaeIII	GTNAC	3 cut(s)	7, 179, 328
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	4 cut(s)	35, 43, 46, 125
MlyI	GAGTC	1 cut(s)	78
MnlI	CCTC	3 cut(s)	45, 195, 275
MseI	TTAA	1 cut(s)	228
MwoI	GCNNNNNNNGC	4 cut(s)	70, 138, 147, 153
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	2 cut(s)	92, 285
NlaIV	GGNNCC	1 cut(s)	131
NmuCI	GTSAC	2 cut(s)	7, 328
NspI	RCATGY	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	339
PkrI	GCNGC	2 cut(s)	43, 149
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	62
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	2 cut(s)	42, 148
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	1 cut(s)	62
SchI	GAGTC	1 cut(s)	78
SetI	ASST	4 cut(s)	75, 121, 328, 347
SfaNI	GCATC	1 cut(s)	159
SsiI	CCGC	1 cut(s)	154
TaaI	ACNGT	2 cut(s)	98, 179
TfiI	GAWTC	1 cut(s)	339
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseFI	GTSAC	2 cut(s)	7, 328
TseI	GCWGC	2 cut(s)	41, 147
Tsp45I	GTSAC	2 cut(s)	7, 328
TspDTI	ATGAA	1 cut(s)	36
TspGWI	ACGGA	1 cut(s)	308
XceI	RCATGY	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.