RLG00000004976

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003632
Physical Location & Seq
Reverse (-)
64131959 .. 64134352
2394 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004976

Sequence Viewer

Length: 630 bp
ATGGATGTGAGGAGAATAGTAGTGGTAGTTGAAGATGTTGAAGCTGCAAGAACAGCTCTGAAATGGGCTCTCCAAAACCTCATACGATTTGGGGATTTCATTACTCTTCTCCATGTTTTCCCAAGTTCAAGATCCAAGAATAAGAACAAAACCAGGCTTCTGCGCTTGAAAGGGTTCAAATTGGCCCTGTCTTTCAAGGACATCTGCGACTCCTTCCCCAATACAAAGGTTGAAATGGTTGTGACAGAAGGAGATGAAGAAGGGAAGAAGATTGCAGCAATGGTGAGGGAGATTGGGGCTTCTGAGCTTGTTCTTGGACTCCATGATCACAGCTTTCTTTACAAGTTGGCAATGGCCCAGGGCAACAATATTGTAAACAACTTCATGAATTGCAGAGTCCTAGCCATCAAGCAACCTTCTTCTTCTTCTTCACCTTTGAGGATCAACAAGGCCAGTGCTTCTACTCCAGCAACACCAGTACTCTTGGACTGTTCAACCAACTTAGACTATTCGCAGATTGATGTTGCTGGTTTACAGTTTCCTGATGTGCCTCCACCAAAAATTCCATACAAAATCTGCCCAAACCCTTATGCCATCATCTGGAAATCAAGGAGGTCAAGGAGGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

210

Amino Acids

23.43

Weight (kDa)

9.78

Isoelectric Point (pI)

54.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 4 - 118 2.3e-10 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 600
AclWI GGATC 2 cut(s) 126, 449
AcsI RAATTY 1 cut(s) 561
AfaI GTAC 1 cut(s) 480
AfiI CCNNNNNNNGG 1 cut(s) 600
AgsI TTSAA 8 cut(s) 32, 41, 129, 169, 178, 196, 233, 495
AjnI CCWGG 2 cut(s) 152, 357
AluBI AGCT 4 cut(s) 44, 56, 307, 333
AluI AGCT 4 cut(s) 44, 56, 307, 333
AlwI GGATC 2 cut(s) 126, 449
AoxI GGCC 3 cut(s) 183, 354, 450
ApeKI GCWGC 2 cut(s) 44, 275
ApoI RAATTY 1 cut(s) 561
Asp700I GAANNNNTTC 1 cut(s) 173
AspLEI GCGC 1 cut(s) 165
AspS9I GGNCC 2 cut(s) 184, 355
AsuHPI GGTGA 2 cut(s) 295, 423
BanII GRGCYC 1 cut(s) 70
BbvI GCAGC 2 cut(s) 31, 287
BccI CCATC 2 cut(s) 413, 602
BciT130I CCWGG 2 cut(s) 154, 359
BclI TGATCA 1 cut(s) 325
BfaI CTAG 1 cut(s) 401
BisI GCNGC 2 cut(s) 45, 276
BlsI GCNGC 2 cut(s) 46, 277
BmcAI AGTACT 1 cut(s) 480
Bme1390I CCNGG 2 cut(s) 154, 359
BmgT120I GGNCC 2 cut(s) 184, 355
BmrFI CCNGG 2 cut(s) 154, 359
BpmI CTGGAG 1 cut(s) 450
BsaJI CCNNGG 2 cut(s) 357, 358
Bsc4I CCNNNNNNNGG 1 cut(s) 600
Bse1I ACTGG 2 cut(s) 453, 476
Bse3DI GCAATG 2 cut(s) 285, 357
BseBI CCWGG 2 cut(s) 154, 359
BseDI CCNNGG 2 cut(s) 357, 358
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 600
BseMI GCAATG 2 cut(s) 285, 357
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 2 cut(s) 453, 476
BseRI GAGGAG 1 cut(s) 25
BseXI GCAGC 2 cut(s) 31, 287
BshFI GGCC 3 cut(s) 185, 356, 452
BslI CCNNNNNNNGG 1 cut(s) 600
BsnI GGCC 3 cut(s) 185, 356, 452
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 3 cut(s) 131, 325, 441
BspANI GGCC 3 cut(s) 185, 356, 452
BspCNI CTCAG 1 cut(s) 295
BspHI TCATGA 1 cut(s) 384
BspPI GGATC 2 cut(s) 126, 449
BsrDI GCAATG 2 cut(s) 285, 357
BsrI ACTGG 2 cut(s) 453, 476
BssECI CCNNGG 2 cut(s) 357, 358
BssMI GATC 3 cut(s) 131, 325, 441
Bst2UI CCWGG 2 cut(s) 154, 359
Bst4CI ACNGT 2 cut(s) 491, 537
Bst6I CTCTTC 1 cut(s) 111
BstDEI CTNAG 2 cut(s) 303, 502
BstF5I GGATG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 3 cut(s) 134, 328, 444
BstMBI GATC 3 cut(s) 131, 325, 441
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 2 cut(s) 154, 359
BstSCI CCNGG 2 cut(s) 152, 357
BstV1I GCAGC 2 cut(s) 31, 287
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BsuRI GGCC 3 cut(s) 185, 356, 452
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 460
CciI TCATGA 1 cut(s) 384
CfoI GCGC 1 cut(s) 165
Cfr13I GGNCC 2 cut(s) 184, 355
Csp6I GTAC 1 cut(s) 479
CviAII CATG 3 cut(s) 113, 323, 385
CviQI GTAC 1 cut(s) 479
DdeI CTNAG 2 cut(s) 303, 502
DpnI GATC 3 cut(s) 133, 327, 443
DpnII GATC 3 cut(s) 131, 325, 441
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 70
EcoRII CCWGG 2 cut(s) 152, 357
EcoT38I GRGCYC 1 cut(s) 70
FaeI CATG 3 cut(s) 116, 326, 388
FaiI YATR 6 cut(s) 83, 114, 324, 386, 568, 591
FatI CATG 3 cut(s) 112, 322, 384
FbaI TGATCA 1 cut(s) 325
Fnu4HI GCNGC 2 cut(s) 45, 276
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 2 cut(s) 45, 276
FspBI CTAG 1 cut(s) 401
GlaI GCGC 1 cut(s) 164
GluI GCNGC 2 cut(s) 45, 276
GsuI CTGGAG 1 cut(s) 450
HaeIII GGCC 3 cut(s) 185, 356, 452
HhaI GCGC 1 cut(s) 165
Hin1II CATG 3 cut(s) 116, 326, 388
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HinfI GANTC 3 cut(s) 209, 318, 396
HphI GGTGA 2 cut(s) 295, 423
Hpy166II GTNNAC 2 cut(s) 376, 533
Hpy188I TCNGA 2 cut(s) 60, 304
Hpy188III TCNNGA 4 cut(s) 129, 385, 542, 601
Hpy8I GTNNAC 2 cut(s) 376, 533
HpyAV CCTTC 4 cut(s) 223, 242, 254, 426
HpyCH4III ACNGT 2 cut(s) 491, 537
HpyCH4V TGCA 3 cut(s) 47, 275, 393
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 2 cut(s) 303, 502
Hsp92II CATG 3 cut(s) 116, 326, 388
HspAI GCGC 1 cut(s) 163
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 3 cut(s) 131, 325, 441
Lsp1109I GCAGC 2 cut(s) 31, 287
MaeI CTAG 1 cut(s) 401
MaeIII GTNAC 1 cut(s) 241
MalI GATC 3 cut(s) 133, 327, 443
MboI GATC 3 cut(s) 131, 325, 441
MboII GAAGA 9 cut(s) 44, 98, 269, 277, 280, 411, 414, 417, 420
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 3 cut(s) 179, 388, 561
MlyI GAGTC 3 cut(s) 203, 312, 405
MnlI CCTC 8 cut(s) 3, 89, 279, 432, 561, 606, 615, 618
MroXI GAANNNNTTC 1 cut(s) 173
MspR9I CCNGG 2 cut(s) 154, 359
MvaI CCWGG 2 cut(s) 154, 359
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 3 cut(s) 131, 325, 441
NlaIII CATG 3 cut(s) 116, 326, 388
NmuCI GTSAC 1 cut(s) 241
PagI TCATGA 1 cut(s) 384
PasI CCCWGGG 1 cut(s) 358
PdmI GAANNNNTTC 1 cut(s) 173
PflMI CCANNNNNTGG 1 cut(s) 600
PkrI GCNGC 2 cut(s) 46, 277
PleI GAGTC 3 cut(s) 203, 312, 404
PpsI GAGTC 3 cut(s) 203, 312, 404
Psp6I CCWGG 2 cut(s) 152, 357
PspGI CCWGG 2 cut(s) 152, 357
PspPI GGNCC 2 cut(s) 184, 355
PsuI RGATCY 1 cut(s) 131
RsaI GTAC 1 cut(s) 480
RsaNI GTAC 1 cut(s) 479
SatI GCNGC 2 cut(s) 45, 276
Sau3AI GATC 3 cut(s) 131, 325, 441
Sau96I GGNCC 2 cut(s) 184, 355
ScaI AGTACT 1 cut(s) 480
SchI GAGTC 3 cut(s) 203, 312, 405
ScrFI CCNGG 2 cut(s) 154, 359
SduI GDGCHC 1 cut(s) 70
Sse9I AATT 3 cut(s) 179, 388, 561
SspI AATATT 1 cut(s) 370
SspMI CTAG 1 cut(s) 401
StyD4I CCNGG 2 cut(s) 152, 357
TaaI ACNGT 2 cut(s) 491, 537
TasI AATT 3 cut(s) 179, 388, 561
TatI WGTACW 1 cut(s) 478
TscAI CASTG 1 cut(s) 460
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 2 cut(s) 44, 275
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 4 cut(s) 88, 270, 373, 401
TspRI CASTG 1 cut(s) 460
Van91I CCANNNNNTGG 1 cut(s) 600
XapI RAATTY 1 cut(s) 561
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 1 cut(s) 401
ZrmI AGTACT 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.