MD06G1209900.v1.1

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0003632
Physical Location & Seq
Forward (+)
34300089 .. 34303431
3343 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1209900.v1.1.491

Sequence Viewer

Length: 738 bp
ATGAATAATCTGTGTGGTTCGATAGTTTTGGCATCTATTTCTACAGAGAGAGAGAGAGAGAGAGAGAGGAGCAGGTGGGTGGCGGTAATGGATGTGAGGAGAATAGTAGTAGTAGTTGAAGACGTGGAAGCAGCAAGAACTGCTCTGAGATGGGCACTCCATAACGTGGTTAGGTTTGGAGACTGGATAACTCTGGTCCATGTGTTTCCAACCCCAAGATCCAGAAACAGGAACAAATCTAGGCTTCTCCGCTTGAAAGGCTTCCAGTTGACCCTCTCATTCAAAGAAATCTGCAACACCTTCCCCAACACCAAGGTTGAAATGATTGTCACAGAAGGTGATCAAGATGGGAAAAAGATTGCAGCTTTGGTCAGAGAGACTGGGGCTTCCGCTCTTGTTCTTGGACTCCATGATCACAGCTTTCTCTACAGGTTGGCAATGTCCCACAGCAGCACTAGTATTGCAAACAACTTGAACTGCAGAGTCCTGGCCGTCAAGCAACCACCACCTTCCTCATCCCCATTAAGTAGCAAGAGGACCAGCAGTACTAACACCAGTGGAGCTGCCACACAAGCCCTCCTCGACAGTTCAACCAACAACATGGACTTTTCACAGATTGACATTGGTGGACTACATGTCCCCTATGTTCCTCCACCAAAAGTTCCATACAGAATCTGCCCAAACCCTTATGCGATCATCTGGAAATCAAGGAAGTCAAGGAGTAGGAGAAATACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

246

Amino Acids

27.42

Weight (kDa)

10.38

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 33 - 166 5.6e-16 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 63
Acc36I ACCTGC 1 cut(s) 63
AccB7I CCANNNNNTGG 1 cut(s) 166
AccBSI CCGCTC 1 cut(s) 392
AciI CCGC 3 cut(s) 83, 250, 390
AclWI GGATC 1 cut(s) 213
AcoI YGGCCR 1 cut(s) 489
AfaI GTAC 1 cut(s) 547
AfiI CCNNNNNNNGG 2 cut(s) 166, 228
AflIII ACRYGT 1 cut(s) 634
AgsI TTSAA 6 cut(s) 119, 256, 283, 320, 475, 591
AhdI GACNNNNNGTC 1 cut(s) 635
AhlI ACTAGT 1 cut(s) 455
AjiI CACGTC 1 cut(s) 124
AjnI CCWGG 1 cut(s) 486
AluBI AGCT 3 cut(s) 365, 420, 563
AluI AGCT 3 cut(s) 365, 420, 563
Alw26I GTCTC 2 cut(s) 174, 371
AlwI GGATC 1 cut(s) 213
AlwNI CAGNNNCTG 1 cut(s) 675
AoxI GGCC 1 cut(s) 489
ApeKI GCWGC 4 cut(s) 131, 362, 450, 563
Asp700I GAANNNNTTC 1 cut(s) 260
AspS9I GGNCC 2 cut(s) 196, 537
AsuHPI GGTGA 1 cut(s) 350
AvaII GGWCC 2 cut(s) 196, 537
BaeGI GKGCMC 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 126
BbvI GCAGC 4 cut(s) 143, 374, 462, 550
BccI CCATC 2 cut(s) 144, 341
BceAI ACGGC 1 cut(s) 476
BciT130I CCWGG 1 cut(s) 488
BclI TGATCA 2 cut(s) 340, 412
BcoDI GTCTC 2 cut(s) 174, 371
BcuI ACTAGT 1 cut(s) 455
BfaI CTAG 2 cut(s) 240, 456
BfmI CTRYAG 3 cut(s) 42, 427, 478
BfuAI ACCTGC 1 cut(s) 63
BisI GCNGC 4 cut(s) 132, 363, 451, 564
BlsI GCNGC 4 cut(s) 133, 364, 452, 565
BmcAI AGTACT 1 cut(s) 547
Bme1390I CCNGG 1 cut(s) 488
Bme18I GGWCC 2 cut(s) 196, 537
BmeRI GACNNNNNGTC 1 cut(s) 635
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 2 cut(s) 196, 537
BmrFI CCNGG 1 cut(s) 488
BmrI ACTGGG 1 cut(s) 390
BmsI GCATC 1 cut(s) 41
BmuI ACTGGG 1 cut(s) 390
BpiI GAAGAC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 312
BsaXI ACNNNNNCTCC 2 cut(s) 561, 591
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 228
Bse1I ACTGG 4 cut(s) 188, 265, 385, 555
Bse3DI GCAATG 1 cut(s) 444
BseBI CCWGG 1 cut(s) 488
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 2 cut(s) 97, 515
BseLI CCNNNNNNNGG 2 cut(s) 166, 228
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 1 cut(s) 137
BseNI ACTGG 4 cut(s) 188, 265, 385, 555
BseRI GAGGAG 3 cut(s) 82, 112, 569
BseSI GKGCMC 1 cut(s) 157
BseXI GCAGC 4 cut(s) 143, 374, 462, 550
BshFI GGCC 1 cut(s) 491
BslFI GGGAC 2 cut(s) 427, 623
BslI CCNNNNNNNGG 2 cut(s) 166, 228
BsmAI GTCTC 2 cut(s) 174, 371
BsmFI GGGAC 2 cut(s) 427, 623
BsnI GGCC 1 cut(s) 491
Bsp1286I GDGCHC 1 cut(s) 157
Bsp143I GATC 4 cut(s) 218, 340, 412, 693
BspACI CCGC 3 cut(s) 83, 250, 390
BspANI GGCC 1 cut(s) 491
BspCNI CTCAG 1 cut(s) 138
BspMAI CTGCAG 1 cut(s) 482
BspMI ACCTGC 1 cut(s) 63
BspPI GGATC 1 cut(s) 213
BsrBI CCGCTC 1 cut(s) 392
BsrDI GCAATG 1 cut(s) 444
BsrI ACTGG 4 cut(s) 188, 265, 385, 555
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 4 cut(s) 218, 340, 412, 693
BssT1I CCWWGG 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 488
Bst4CI ACNGT 1 cut(s) 587
BstAPI GCANNNNNTGC 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 146
BstF5I GGATG 2 cut(s) 97, 515
BstKTI GATC 4 cut(s) 221, 343, 415, 696
BstMAI GTCTC 2 cut(s) 174, 371
BstMBI GATC 4 cut(s) 218, 340, 412, 693
BstMWI GCNNNNNNNGC 3 cut(s) 140, 258, 572
BstNI CCWGG 1 cut(s) 488
BstNSI RCATGY 1 cut(s) 638
BstSCI CCNGG 1 cut(s) 486
BstSFI CTRYAG 3 cut(s) 42, 427, 478
BstSLI GKGCMC 1 cut(s) 157
BstV1I GCAGC 4 cut(s) 143, 374, 462, 550
BstV2I GAAGAC 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 218
BstXI CCANNNNNNTGG 1 cut(s) 601
BstYI RGATCY 1 cut(s) 218
BsuRI GGCC 1 cut(s) 491
BtrI CACGTC 1 cut(s) 124
BtsCI GGATG 2 cut(s) 97, 515
BtsIMutI CAGTG 1 cut(s) 562
BveI ACCTGC 1 cut(s) 63
CaiI CAGNNNCTG 1 cut(s) 675
Cfr13I GGNCC 2 cut(s) 196, 537
Csp6I GTAC 1 cut(s) 546
CviAII CATG 4 cut(s) 200, 410, 601, 635
CviJI RGCY 8 cut(s) 244, 261, 365, 386, 420, 491, 563, 575
CviKI_1 RGCY 8 cut(s) 244, 261, 365, 386, 420, 491, 563, 575
CviQI GTAC 1 cut(s) 546
DdeI CTNAG 1 cut(s) 146
DpnI GATC 4 cut(s) 220, 342, 414, 695
DpnII GATC 4 cut(s) 218, 340, 412, 693
DriI GACNNNNNGTC 1 cut(s) 635
EaeI YGGCCR 1 cut(s) 489
Eam1105I GACNNNNNGTC 1 cut(s) 635
Eco130I CCWWGG 1 cut(s) 312
Eco47I GGWCC 2 cut(s) 196, 537
EcoRII CCWGG 1 cut(s) 486
EcoT14I CCWWGG 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 4 cut(s) 203, 413, 604, 638
FaiI YATR 9 cut(s) 162, 201, 411, 602, 636, 645, 667, 690, 736
FaqI GGGAC 2 cut(s) 427, 623
FatI CATG 4 cut(s) 199, 409, 600, 634
FbaI TGATCA 2 cut(s) 340, 412
Fnu4HI GCNGC 4 cut(s) 132, 363, 451, 564
FokI GGATG 2 cut(s) 104, 502
Fsp4HI GCNGC 4 cut(s) 132, 363, 451, 564
FspBI CTAG 2 cut(s) 240, 456
GluI GCNGC 4 cut(s) 132, 363, 451, 564
HaeIII GGCC 1 cut(s) 491
Hin1II CATG 4 cut(s) 203, 413, 604, 638
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HinfI GANTC 3 cut(s) 405, 483, 672
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 2 cut(s) 270, 629
Hpy188I TCNGA 2 cut(s) 147, 374
Hpy188III TCNNGA 3 cut(s) 222, 344, 700
Hpy8I GTNNAC 2 cut(s) 270, 629
HpyAV CCTTC 3 cut(s) 310, 329, 519
HpyCH4III ACNGT 1 cut(s) 587
HpyCH4IV ACGT 2 cut(s) 123, 165
HpyCH4V TGCA 4 cut(s) 294, 362, 464, 480
HpyF10VI GCNNNNNNNGC 3 cut(s) 140, 258, 572
HpyF3I CTNAG 1 cut(s) 146
HpySE526I ACGT 2 cut(s) 123, 165
Hsp92II CATG 4 cut(s) 203, 413, 604, 638
Ksp22I TGATCA 2 cut(s) 340, 412
Kzo9I GATC 4 cut(s) 218, 340, 412, 693
LmnI GCTCC 2 cut(s) 69, 560
Lsp1109I GCAGC 4 cut(s) 143, 374, 462, 550
LweI GCATC 1 cut(s) 41
MaeI CTAG 2 cut(s) 240, 456
MaeII ACGT 2 cut(s) 123, 165
MaeIII GTNAC 1 cut(s) 328
MalI GATC 4 cut(s) 220, 342, 414, 695
MbiI CCGCTC 1 cut(s) 392
MboI GATC 4 cut(s) 218, 340, 412, 693
MboII GAAGA 1 cut(s) 131
MflI RGATCY 1 cut(s) 218
MhlI GDGCHC 1 cut(s) 157
MlyI GAGTC 2 cut(s) 399, 492
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 8 cut(s) 60, 90, 284, 523, 528, 587, 590, 660
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 1 cut(s) 524
MspR9I CCNGG 1 cut(s) 488
MvaI CCWGG 1 cut(s) 488
MwoI GCNNNNNNNGC 3 cut(s) 140, 258, 572
NdeII GATC 4 cut(s) 218, 340, 412, 693
NlaIII CATG 4 cut(s) 203, 413, 604, 638
NmuCI GTSAC 1 cut(s) 328
NspI RCATGY 1 cut(s) 638
PaqCI CACCTGC 1 cut(s) 63
PciI ACATGT 1 cut(s) 634
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 672
PflMI CCANNNNNTGG 1 cut(s) 166
PkrI GCNGC 4 cut(s) 133, 364, 452, 565
PleI GAGTC 2 cut(s) 399, 491
PpsI GAGTC 2 cut(s) 399, 491
PscI ACATGT 1 cut(s) 634
Psp6I CCWGG 1 cut(s) 486
PspGI CCWGG 1 cut(s) 486
PspPI GGNCC 2 cut(s) 196, 537
PstI CTGCAG 1 cut(s) 482
PstNI CAGNNNCTG 1 cut(s) 675
PsuI RGATCY 1 cut(s) 218
RsaI GTAC 1 cut(s) 547
RsaNI GTAC 1 cut(s) 546
SaqAI TTAA 1 cut(s) 524
SatI GCNGC 4 cut(s) 132, 363, 451, 564
Sau3AI GATC 4 cut(s) 218, 340, 412, 693
Sau96I GGNCC 2 cut(s) 196, 537
ScaI AGTACT 1 cut(s) 547
SchI GAGTC 2 cut(s) 399, 492
ScrFI CCNGG 1 cut(s) 488
SduI GDGCHC 1 cut(s) 157
SfaNI GCATC 1 cut(s) 41
SfcI CTRYAG 3 cut(s) 42, 427, 478
SinI GGWCC 2 cut(s) 196, 537
SpeI ACTAGT 1 cut(s) 455
SsiI CCGC 3 cut(s) 83, 250, 390
SspMI CTAG 2 cut(s) 240, 456
StyD4I CCNGG 1 cut(s) 486
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 1 cut(s) 587
TaiI ACGT 2 cut(s) 126, 168
TaqI TCGA 2 cut(s) 20, 582
TatI WGTACW 1 cut(s) 545
TfiI GAWTC 1 cut(s) 672
Tru1I TTAA 1 cut(s) 524
Tru9I TTAA 1 cut(s) 524
TscAI CASTG 1 cut(s) 562
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 4 cut(s) 131, 362, 450, 563
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 562
Van91I CCANNNNNTGG 1 cut(s) 166
VpaK11BI GGWCC 2 cut(s) 196, 537
XceI RCATGY 1 cut(s) 638
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 2 cut(s) 240, 456
ZrmI AGTACT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.