Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003632

Physical Location & Seq

Genomic Coordinates Forward (+)

22366837 .. 22369193

Gene Structure 2357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18750.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGATGTGAGGAGAATAGTAGTAGTTGTTGAAGACGTGGAAGCAGCAAGAACTGCTCTGAGATGGGCACTCCACAACCTGGTTAGGTTTGGAGACTGGATAACTCTGGTCCATGTGTTCCCAACCCCAAGATCCAGGAACAGGAACAAATCCAGGCTTCTCCGTTTGAAAGGCTTCCAGTTGACCCTCTCCTTCAAAGAAATCTGCAGCACCTTCCCCAACACCAAGGTTGAAATGATTGTCACAGAAGGTGATCAAGATGGGAAGAAGATTGCAGCTTTGGTCAGAGAGATTGGGGCTTCCGCTCTTGTTCTTGGACTCCATCGATCACAGCTTTCTCTACAGGTTGGCAATGTCCCACAGCAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

124

Amino Acids

13.91

Weight (kDa)

10.53

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48960
fragaria_vesca	FvH4_5g12810 FvH4_5g12810
malus_domestica	MD06G1209900.v1.1 MD14G1220800.v1.1
prunus_persica	Prupe.5G216100_v2.0.a1
pyrus_communis	pycom06g18750 pycom14g18260 pycom14g18270
rosa_chinensis	RchiOBHm_Chr4g0434591 RchiOBHm_Chr5g0042351 RchiOBHm_Chr7g0184421
rosa_laevigata	RLG00000004976
rosa_multiflora	Rmu_sc0000263.1_g000010 Rmu_sc0004359.1_g000002 Rmu_sc0004836.1_g000007 Rmu_sc0009538.1_g000013
rosa_roxburghii	Rroxscaffold_3G00269630
rosa_rugosa	Rorug05G0114200
rosa_samantha	Rh1BG143000 Rh1BG224900 Rh1CG156500 Rh1CG168200 Rh1CG183200 Rh1DG252700 Rh4CG294500 Rh5AG209900 Rh5AG439700 Rh5DG299900 Rh7AG080100 Rh7BG067100 Rh7CG067400 Rh7DG067100
rosa_wichuraiana	Rw5G019120 Rw7G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	79
AccBSI	CCGCTC	1 cut(s)	305
AciI	CCGC	1 cut(s)	303
AclWI	GGATC	1 cut(s)	126
AfiI	CCNNNNNNNGG	2 cut(s)	79, 141
AgsI	TTSAA	4 cut(s)	32, 169, 196, 233
AjiI	CACGTC	1 cut(s)	37
AjnI	CCWGG	3 cut(s)	78, 134, 152
AluBI	AGCT	2 cut(s)	278, 334
AluI	AGCT	2 cut(s)	278, 334
Alw26I	GTCTC	1 cut(s)	87
AlwI	GGATC	1 cut(s)	126
ApeKI	GCWGC	4 cut(s)	44, 207, 275, 364
Asp700I	GAANNNNTTC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	109
BaeGI	GKGCMC	1 cut(s)	70
BbsI	GAAGAC	1 cut(s)	39
BbvI	GCAGC	3 cut(s)	56, 219, 287
BccI	CCATC	3 cut(s)	57, 254, 330
BciT130I	CCWGG	3 cut(s)	80, 136, 154
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	87
BfaI	CTAG	1 cut(s)	370
BfmI	CTRYAG	2 cut(s)	205, 341
BisI	GCNGC	4 cut(s)	45, 208, 276, 365
BlsI	GCNGC	4 cut(s)	46, 209, 277, 366
Bme1390I	CCNGG	3 cut(s)	80, 136, 154
Bme18I	GGWCC	1 cut(s)	109
BmgBI	CACGTC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	109
BmrFI	CCNGG	3 cut(s)	80, 136, 154
BpiI	GAAGAC	1 cut(s)	39
Bsa29I	ATCGAT	1 cut(s)	325
BsaJI	CCNNGG	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 141
Bse1I	ACTGG	2 cut(s)	101, 178
Bse3DI	GCAATG	1 cut(s)	358
BseBI	CCWGG	3 cut(s)	80, 136, 154
BseCI	ATCGAT	1 cut(s)	325
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	79, 141
BseMI	GCAATG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	2 cut(s)	101, 178
BseRI	GAGGAG	1 cut(s)	25
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	3 cut(s)	56, 219, 287
BshVI	ATCGAT	1 cut(s)	325
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	2 cut(s)	79, 141
BsmAI	GTCTC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	341
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	131, 253, 326
BspACI	CCGC	1 cut(s)	303
BspCNI	CTCAG	1 cut(s)	51
BspDI	ATCGAT	1 cut(s)	325
BspMAI	CTGCAG	1 cut(s)	209
BspPI	GGATC	1 cut(s)	126
BsrBI	CCGCTC	1 cut(s)	305
BsrDI	GCAATG	1 cut(s)	358
BsrI	ACTGG	2 cut(s)	101, 178
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	3 cut(s)	131, 253, 326
BssT1I	CCWWGG	1 cut(s)	225
Bst2UI	CCWGG	3 cut(s)	80, 136, 154
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstDEI	CTNAG	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	3 cut(s)	134, 256, 329
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	3 cut(s)	131, 253, 326
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	3 cut(s)	80, 136, 154
BstSCI	CCNGG	3 cut(s)	78, 134, 152
BstSFI	CTRYAG	2 cut(s)	205, 341
BstSLI	GKGCMC	1 cut(s)	70
BstV1I	GCAGC	3 cut(s)	56, 219, 287
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
Bsu15I	ATCGAT	1 cut(s)	325
BsuTUI	ATCGAT	1 cut(s)	325
BtrI	CACGTC	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	109
ClaI	ATCGAT	1 cut(s)	325
CsiI	ACCWGGT	1 cut(s)	78
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	5 cut(s)	157, 174, 278, 299, 334
CviKI_1	RGCY	5 cut(s)	157, 174, 278, 299, 334
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	3 cut(s)	133, 255, 328
DpnII	GATC	3 cut(s)	131, 253, 326
Eco130I	CCWWGG	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	109
EcoRII	CCWGG	3 cut(s)	78, 134, 152
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	1 cut(s)	116
FaiI	YATR	1 cut(s)	114
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	1 cut(s)	112
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	4 cut(s)	45, 208, 276, 365
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	4 cut(s)	45, 208, 276, 365
FspBI	CTAG	1 cut(s)	370
GluI	GCNGC	4 cut(s)	45, 208, 276, 365
Hin1II	CATG	1 cut(s)	116
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HinfI	GANTC	1 cut(s)	318
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	2 cut(s)	60, 287
Hpy188III	TCNNGA	1 cut(s)	257
Hpy8I	GTNNAC	1 cut(s)	183
HpyAV	CCTTC	3 cut(s)	202, 223, 242
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	2 cut(s)	207, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	59
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	116
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	3 cut(s)	131, 253, 326
Lsp1109I	GCAGC	3 cut(s)	56, 219, 287
MabI	ACCWGGT	1 cut(s)	78
MaeI	CTAG	1 cut(s)	370
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	3 cut(s)	133, 255, 328
MbiI	CCGCTC	1 cut(s)	305
MboI	GATC	3 cut(s)	131, 253, 326
MboII	GAAGA	3 cut(s)	44, 277, 280
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	70
MlyI	GAGTC	1 cut(s)	312
MnlI	CCTC	2 cut(s)	3, 197
MroXI	GAANNNNTTC	1 cut(s)	173
MspR9I	CCNGG	3 cut(s)	80, 136, 154
MvaI	CCWGG	3 cut(s)	80, 136, 154
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	3 cut(s)	131, 253, 326
NlaIII	CATG	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	241
PdmI	GAANNNNTTC	1 cut(s)	173
PflMI	CCANNNNNTGG	1 cut(s)	79
PfoI	TCCNGGA	1 cut(s)	134
PkrI	GCNGC	4 cut(s)	46, 209, 277, 366
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
Psp6I	CCWGG	3 cut(s)	78, 134, 152
PspGI	CCWGG	3 cut(s)	78, 134, 152
PspPI	GGNCC	1 cut(s)	109
PstI	CTGCAG	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	131
SatI	GCNGC	4 cut(s)	45, 208, 276, 365
Sau3AI	GATC	3 cut(s)	131, 253, 326
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	1 cut(s)	312
ScrFI	CCNGG	3 cut(s)	80, 136, 154
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	9 cut(s)	39, 81, 89, 215, 231, 253, 280, 336, 348
SexAI	ACCWGGT	1 cut(s)	78
SfcI	CTRYAG	2 cut(s)	205, 341
SinI	GGWCC	1 cut(s)	109
SsiI	CCGC	1 cut(s)	303
SspMI	CTAG	1 cut(s)	370
StyD4I	CCNGG	3 cut(s)	78, 134, 152
StyI	CCWWGG	1 cut(s)	225
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	1 cut(s)	325
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	4 cut(s)	44, 207, 275, 364
Tsp45I	GTSAC	1 cut(s)	241
TspGWI	ACGGA	1 cut(s)	152
Van91I	CCANNNNNTGG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	109
XmnI	GAANNNNTTC	1 cut(s)	173
XspI	CTAG	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.