AT1G49330

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004320
Physical Location & Seq
Forward (+)
18249866 .. 18251038
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G49330.1

Sequence Viewer

Length: 996 bp
ATGACGAATCAGTCTCATGATGATGACGATGACGATGAGCAGCTTCCTCGTTCGCTATTCAGACTCGTTTCGCTTCCCCAAAAAACCATGACGAATCAGACTCATGATGATGACGATGACGATGAGCAGCTTCCTCTTTCGCTAACCTTGGGCTCAACATCGTATTCCTCTCAGATCCGTCCTGTGAAGTCACCGGTTCCTATAGCTCCACCACCGGAATTCCCTGGACCTGTGACAACGTGGCCAACACCTGCTGATTTTCTGGCGACGCGGTCTATGGTGCCTGATCCCCCTCCGCCGTCTCATCAGATACCTTTATGGATGAGCAACTATTTTCAACAGACACCGAATCCGCCTCAGCTGGTTACTCATTTCTTCCCGCCGTCAGGTTTAGCTCCACCTTCGTCAAATCTAACTCCTCCGCCGGTGAAGAGACCAGTAACCGGTTCCGTTCGTATTTATAGATCACGATCAACCGTAAGTAAGAAATCCGATACGATTTCTCCGCCGTTTCCATGGGCGACTAATCGCCGTGGGGAGATACAAAGCCTTGAGTATCTCGAATCGAATCAGATCACAACCATCACCGGAGAGGTACAATGTCGACACTGCGAGAAAGTGTATCAGGTTAGCTACAATCTAAGGGAGAGATTCGCTGAGGTTGTGAAGTTTTATTTGACGGAGAAGAGGAAAATGAGGGACAGAGCTCATAAGGATTGGGCGTATCCAGAGCAACGGAGATGTGAGCTTTGTGGCCGTGAAAAAGCTGTGAAACCGGTGATTGCTGAACGGAAAAGTCAGATTAATTGGTTGTTTTTGCTTTTGGGACAAACGTTGGGTTTTTGTACATTGGAGCAGCTTAAGAATTTCTGCAAACATTCCAAGAATCATCGTACTGGTGCTAAGGATCGTGTTCTTTACTTGACGTATATGGGTCTCTGCAAGATGCTTCAGCCTAAATCTGACCTCTTTACCTGTGTCGCCGGAAAGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

331

Amino Acids

37.86

Weight (kDa)

9.03

Isoelectric Point (pI)

56.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7086 PF23324 184 - 317 4.8e-59 Domain of unknown function (DUF7086)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 259
AasI GACNNNNNNGTC 1 cut(s) 10
Acc36I ACCTGC 1 cut(s) 259
AccB1I GGYRCC 1 cut(s) 280
AccI GTMKAC 1 cut(s) 604
AccII CGCG 1 cut(s) 271
AciI CCGC 7 cut(s) 271, 296, 353, 380, 422, 506, 991
AclI AACGTT 1 cut(s) 833
AclWI GGATC 3 cut(s) 169, 281, 915
AcoI YGGCCR 2 cut(s) 242, 754
AcsI RAATTY 2 cut(s) 218, 865
AcuI CTGAAG 1 cut(s) 935
AfaI GTAC 3 cut(s) 597, 847, 895
AfiI CCNNNNNNNGG 3 cut(s) 386, 443, 990
AflII CTTAAG 1 cut(s) 860
AgeI ACCGGT 3 cut(s) 193, 443, 775
AgsI TTSAA 1 cut(s) 338
AjnI CCWGG 1 cut(s) 223
Alw21I GWGCWC 1 cut(s) 709
Alw26I GTCTC 4 cut(s) 18, 306, 427, 941
AlwI GGATC 3 cut(s) 169, 281, 915
AoxI GGCC 2 cut(s) 242, 754
ApeKI GCWGC 3 cut(s) 40, 127, 856
ApoI RAATTY 2 cut(s) 218, 865
AseI ATTAAT 1 cut(s) 804
AsiGI ACCGGT 3 cut(s) 193, 443, 775
AspS9I GGNCC 1 cut(s) 227
AsuHPI GGTGA 4 cut(s) 183, 439, 577, 790
AvaII GGWCC 1 cut(s) 227
BalI TGGCCA 1 cut(s) 244
BanI GGYRCC 1 cut(s) 280
BanII GRGCYC 2 cut(s) 155, 709
Bbv12I GWGCWC 1 cut(s) 709
BbvCI CCTCAGC 2 cut(s) 357, 657
BbvI GCAGC 3 cut(s) 52, 139, 868
BccI CCATC 1 cut(s) 590
BceAI ACGGC 5 cut(s) 283, 367, 493, 516, 741
BcgI CGANNNNNNTGC 2 cut(s) 29, 63
BciT130I CCWGG 1 cut(s) 225
BciVI GTATCC 1 cut(s) 735
BcoDI GTCTC 4 cut(s) 18, 306, 427, 941
BfmI CTRYAG 1 cut(s) 201
BfrI CTTAAG 1 cut(s) 860
BfuAI ACCTGC 1 cut(s) 259
BfuI GTATCC 1 cut(s) 735
BisI GCNGC 3 cut(s) 41, 128, 857
BlsI GCNGC 3 cut(s) 42, 129, 858
Bme1390I CCNGG 1 cut(s) 225
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 3 cut(s) 198, 282, 448
BmrFI CCNGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 936
Bpu10I CCTNAGC 3 cut(s) 357, 657, 903
BpuEI CTTGAG 1 cut(s) 572
BsaBI GATNNNNATC 1 cut(s) 469
BsaI GGTCTC 2 cut(s) 427, 941
BsaJI CCNNGG 4 cut(s) 147, 223, 515, 532
BsaWI WCCGGW 5 cut(s) 193, 214, 443, 587, 775
BsaXI ACNNNNNCTCC 2 cut(s) 487, 517
Bsc4I CCNNNNNNNGG 3 cut(s) 386, 443, 990
Bse118I RCCGGY 4 cut(s) 193, 424, 443, 775
Bse1I ACTGG 2 cut(s) 437, 901
Bse8I GATNNNNATC 1 cut(s) 469
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 4 cut(s) 147, 223, 515, 532
BseGI GGATG 1 cut(s) 327
BseJI GATNNNNATC 1 cut(s) 469
BseLI CCNNNNNNNGG 3 cut(s) 386, 443, 990
BseMII CTCAG 3 cut(s) 185, 371, 648
BseNI ACTGG 2 cut(s) 437, 901
BseRI GAGGAG 1 cut(s) 408
BseXI GCAGC 3 cut(s) 52, 139, 868
Bsh1236I CGCG 1 cut(s) 271
BshFI GGCC 2 cut(s) 244, 756
BshNI GGYRCC 1 cut(s) 280
BshTI ACCGGT 3 cut(s) 193, 443, 775
BsiHKAI GWGCWC 1 cut(s) 709
BsiSI CCGG 7 cut(s) 194, 215, 425, 444, 588, 776, 984
BslFI GGGAC 2 cut(s) 713, 840
BslI CCNNNNNNNGG 3 cut(s) 386, 443, 990
BsmAI GTCTC 4 cut(s) 18, 306, 427, 941
BsmBI CGTCTC 1 cut(s) 306
BsmFI GGGAC 2 cut(s) 713, 840
BsnI GGCC 2 cut(s) 244, 756
Bso31I GGTCTC 2 cut(s) 427, 941
Bsp1286I GDGCHC 2 cut(s) 155, 709
Bsp1407I TGTACA 1 cut(s) 845
Bsp143I GATC 6 cut(s) 174, 286, 464, 470, 573, 907
Bsp19I CCATGG 1 cut(s) 515
BspACI CCGC 7 cut(s) 271, 296, 353, 380, 422, 506, 991
BspANI GGCC 2 cut(s) 244, 756
BspCNI CTCAG 3 cut(s) 184, 370, 649
BspFNI CGCG 1 cut(s) 271
BspHI TCATGA 2 cut(s) 16, 103
BspLI GGNNCC 3 cut(s) 198, 282, 448
BspMI ACCTGC 1 cut(s) 259
BspPI GGATC 3 cut(s) 169, 281, 915
BspT107I GGYRCC 1 cut(s) 280
BspTI CTTAAG 1 cut(s) 860
BspTNI GGTCTC 2 cut(s) 427, 941
BsrFI RCCGGY 4 cut(s) 193, 424, 443, 775
BsrGI TGTACA 1 cut(s) 845
BsrI ACTGG 2 cut(s) 437, 901
BssAI RCCGGY 4 cut(s) 193, 424, 443, 775
BssECI CCNNGG 4 cut(s) 147, 223, 515, 532
BssMI GATC 6 cut(s) 174, 286, 464, 470, 573, 907
BssT1I CCWWGG 2 cut(s) 147, 515
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 1 cut(s) 478
Bst6I CTCTTC 2 cut(s) 425, 680
BstAFI CTTAAG 1 cut(s) 860
BstAUI TGTACA 1 cut(s) 845
BstDEI CTNAG 5 cut(s) 171, 357, 641, 657, 903
BstDSI CCRYGG 2 cut(s) 515, 532
BstF5I GGATG 1 cut(s) 327
BstFNI CGCG 1 cut(s) 271
BstKTI GATC 6 cut(s) 177, 289, 467, 473, 576, 910
BstMAI GTCTC 4 cut(s) 18, 306, 427, 941
BstMBI GATC 6 cut(s) 174, 286, 464, 470, 573, 907
BstNI CCWGG 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 223
BstSFI CTRYAG 1 cut(s) 201
BstUI CGCG 1 cut(s) 271
BstV1I GCAGC 3 cut(s) 52, 139, 868
BstX2I RGATCY 1 cut(s) 174
BstYI RGATCY 1 cut(s) 174
BsuI GTATCC 1 cut(s) 735
BsuRI GGCC 2 cut(s) 244, 756
BtgI CCRYGG 2 cut(s) 515, 532
BtsCI GGATG 1 cut(s) 327
BtsI GCAGTG 1 cut(s) 607
BtsIMutI CAGTG 1 cut(s) 607
BveI ACCTGC 1 cut(s) 259
CciI TCATGA 2 cut(s) 16, 103
Cfr10I RCCGGY 4 cut(s) 193, 424, 443, 775
Cfr13I GGNCC 1 cut(s) 227
CseI GACGC 1 cut(s) 277
Csp6I GTAC 3 cut(s) 596, 846, 894
CspAI ACCGGT 3 cut(s) 193, 443, 775
CviAII CATG 4 cut(s) 17, 88, 104, 516
CviQI GTAC 3 cut(s) 596, 846, 894
DdeI CTNAG 5 cut(s) 171, 357, 641, 657, 903
DpnI GATC 6 cut(s) 176, 288, 466, 472, 575, 909
DpnII GATC 6 cut(s) 174, 286, 464, 470, 573, 907
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
EaeI YGGCCR 2 cut(s) 242, 754
Eam1104I CTCTTC 2 cut(s) 425, 680
EarI CTCTTC 2 cut(s) 425, 680
EciI GGCGGA 4 cut(s) 285, 342, 411, 495
Ecl136II GAGCTC 1 cut(s) 707
Eco130I CCWWGG 2 cut(s) 147, 515
Eco24I GRGCYC 2 cut(s) 155, 709
Eco31I GGTCTC 2 cut(s) 427, 941
Eco47I GGWCC 1 cut(s) 227
Eco53kI GAGCTC 1 cut(s) 707
Eco57I CTGAAG 1 cut(s) 935
EcoICRI GAGCTC 1 cut(s) 707
EcoRI GAATTC 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 223
EcoT14I CCWWGG 2 cut(s) 147, 515
EcoT38I GRGCYC 2 cut(s) 155, 709
ErhI CCWWGG 2 cut(s) 147, 515
Esp3I CGTCTC 1 cut(s) 306
FaeI CATG 4 cut(s) 20, 91, 107, 519
FaqI GGGAC 2 cut(s) 713, 840
FatI CATG 4 cut(s) 16, 87, 103, 515
FauI CCCGC 1 cut(s) 387
FblI GTMKAC 1 cut(s) 604
Fnu4HI GCNGC 3 cut(s) 41, 128, 857
FokI GGATG 1 cut(s) 334
FriOI GRGCYC 2 cut(s) 155, 709
Fsp4HI GCNGC 3 cut(s) 41, 128, 857
GluI GCNGC 3 cut(s) 41, 128, 857
HaeIII GGCC 2 cut(s) 244, 756
HapII CCGG 7 cut(s) 194, 215, 425, 444, 588, 776, 984
HgaI GACGC 1 cut(s) 277
Hin1II CATG 4 cut(s) 20, 91, 107, 519
HincII GTYRAC 1 cut(s) 605
HindII GTYRAC 1 cut(s) 605
HinfI GANTC 9 cut(s) 7, 63, 94, 100, 349, 563, 568, 651, 886
HpaII CCGG 7 cut(s) 194, 215, 425, 444, 588, 776, 984
HphI GGTGA 4 cut(s) 183, 439, 577, 790
Hpy166II GTNNAC 1 cut(s) 605
Hpy188I TCNGA 8 cut(s) 62, 99, 174, 309, 493, 573, 801, 964
Hpy188III TCNNGA 5 cut(s) 17, 104, 468, 560, 728
Hpy8I GTNNAC 1 cut(s) 605
Hpy99I CGWCG 1 cut(s) 271
HpyAV CCTTC 1 cut(s) 411
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4IV ACGT 3 cut(s) 239, 833, 926
HpyCH4V TGCA 2 cut(s) 873, 942
HpyF3I CTNAG 5 cut(s) 171, 357, 641, 657, 903
HpySE526I ACGT 3 cut(s) 239, 833, 926
Hsp92II CATG 4 cut(s) 20, 91, 107, 519
Kzo9I GATC 6 cut(s) 174, 286, 464, 470, 573, 907
LmnI GCTCC 3 cut(s) 211, 400, 853
Lsp1109I GCAGC 3 cut(s) 52, 139, 868
LweI GCATC 1 cut(s) 936
MaeII ACGT 3 cut(s) 239, 833, 926
MaeIII GTNAC 4 cut(s) 189, 232, 364, 439
MalI GATC 6 cut(s) 176, 288, 466, 472, 575, 909
MboI GATC 6 cut(s) 174, 286, 464, 470, 573, 907
MboII GAAGA 3 cut(s) 367, 442, 697
MflI RGATCY 1 cut(s) 174
MhlI GDGCHC 2 cut(s) 155, 709
MlsI TGGCCA 1 cut(s) 244
MluCI AATT 3 cut(s) 218, 805, 865
MluNI TGGCCA 1 cut(s) 244
MlyI GAGTC 2 cut(s) 57, 94
Mox20I TGGCCA 1 cut(s) 244
MscI TGGCCA 1 cut(s) 244
MseI TTAA 2 cut(s) 804, 861
MslI CAYNNNNRTG 2 cut(s) 21, 108
Msp20I TGGCCA 1 cut(s) 244
MspA1I CMGCKG 1 cut(s) 361
MspCI CTTAAG 1 cut(s) 860
MspI CCGG 7 cut(s) 194, 215, 425, 444, 588, 776, 984
MspR9I CCNGG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 225
MvnI CGCG 1 cut(s) 271
NcoI CCATGG 1 cut(s) 515
NdeII GATC 6 cut(s) 174, 286, 464, 470, 573, 907
NlaIII CATG 4 cut(s) 20, 91, 107, 519
NlaIV GGNNCC 3 cut(s) 198, 282, 448
NmuCI GTSAC 2 cut(s) 189, 232
PagI TCATGA 2 cut(s) 16, 103
PaqCI CACCTGC 1 cut(s) 259
PfeI GAWTC 7 cut(s) 7, 94, 349, 563, 568, 651, 886
PflFI GACNNNGTC 1 cut(s) 271
PinAI ACCGGT 3 cut(s) 193, 443, 775
PkrI GCNGC 3 cut(s) 42, 129, 858
PleI GAGTC 2 cut(s) 57, 94
PpsI GAGTC 2 cut(s) 57, 94
PshBI ATTAAT 1 cut(s) 804
Psp124BI GAGCTC 1 cut(s) 709
Psp1406I AACGTT 1 cut(s) 833
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 3 cut(s) 198, 282, 448
PspPI GGNCC 1 cut(s) 227
PsuI RGATCY 1 cut(s) 174
PsyI GACNNNGTC 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 361
RsaI GTAC 3 cut(s) 597, 847, 895
RsaNI GTAC 3 cut(s) 596, 846, 894
RseI CAYNNNNRTG 2 cut(s) 21, 108
SacI GAGCTC 1 cut(s) 709
SalI GTCGAC 1 cut(s) 603
SaqAI TTAA 2 cut(s) 804, 861
SatI GCNGC 3 cut(s) 41, 128, 857
Sau3AI GATC 6 cut(s) 174, 286, 464, 470, 573, 907
Sau96I GGNCC 1 cut(s) 227
SchI GAGTC 2 cut(s) 57, 94
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 2 cut(s) 155, 709
SfaNI GCATC 1 cut(s) 936
SfcI CTRYAG 1 cut(s) 201
SgrAI CRCCGGYG 1 cut(s) 424
SinI GGWCC 1 cut(s) 227
SmiMI CAYNNNNRTG 2 cut(s) 21, 108
SmlI CTYRAG 2 cut(s) 551, 860
SmoI CTYRAG 2 cut(s) 551, 860
Sse9I AATT 3 cut(s) 218, 805, 865
SsiI CCGC 7 cut(s) 271, 296, 353, 380, 422, 506, 991
SstI GAGCTC 1 cut(s) 709
StyD4I CCNGG 1 cut(s) 223
StyI CCWWGG 2 cut(s) 147, 515
TaaI ACNGT 1 cut(s) 478
TaiI ACGT 3 cut(s) 242, 836, 929
TaqI TCGA 3 cut(s) 561, 566, 604
TasI AATT 3 cut(s) 218, 805, 865
TatI WGTACW 1 cut(s) 845
TfiI GAWTC 7 cut(s) 7, 94, 349, 563, 568, 651, 886
Tru1I TTAA 2 cut(s) 804, 861
Tru9I TTAA 2 cut(s) 804, 861
TscAI CASTG 1 cut(s) 614
TseFI GTSAC 2 cut(s) 189, 232
TseI GCWGC 3 cut(s) 40, 127, 856
Tsp45I GTSAC 2 cut(s) 189, 232
TspGWI ACGGA 5 cut(s) 167, 439, 695, 751, 805
TspRI CASTG 1 cut(s) 614
Tth111I GACNNNGTC 1 cut(s) 271
Vha464I CTTAAG 1 cut(s) 860
VpaK11BI GGWCC 1 cut(s) 227
VspI ATTAAT 1 cut(s) 804
XapI RAATTY 2 cut(s) 218, 865
XmiI GTMKAC 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.