Rh3AG137900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0004320
Physical Location & Seq
Reverse (-)
12052799 .. 12054102
1304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG137900.1

Sequence Viewer

Length: 777 bp
ATGACTTCCTCCATTCCTTTTGATCACATCAATGAAGAACATGAAGAGCTCCTAACCCTTCAACTCTCCACCGGAAACCATTCAACCCGACCCATCCAACAATCTCCTCTTTTGATCTCGACAGCGTCTCAGTCTCTAACTTTATTTGCAGCAACGAATTTCCTCATGACATCACCACAAAACTCTAACCCTCCTGCTCCTTCTGCCTCTAATCACGAGGCTTCAGCGGCTGGTAGTTCCAGGTCGTCCCGTGCCCGCAGATCTTCAGCTCAAACCCTAAGAGAAGGGAAGACTGAAGACATACCAGCCCCATATCCTTGGGCTACCACAAAACGTGCTCAAGTGTACTCTCGTCGATATTTGCTTTCTAATGGCATCAAGAAAATCAGTGGTGCGGTCCAATGCAAAAAGTGTGATCAGAAGTATGAGATTGAGTATGATCTGGAACAAAAGTTCGAGGAAGTGGCGACTTATGTGTCTCAGCACAAGAGTGCAATGCGTGATAGGGCACCTGCAGTTTGGATGACTCCCACACTCCCGGATTGCAAGTTCTGTGGTCAAACAAATTGTGTGAAGCCTGAGATGGACAAGAAGAGGTCAATCAATTGGCTGTTCTTGCTTTTGGGTCAAATGCTCGGAATGTGCAAACTCAATGAATTGAAGTACTTCTGCAAGCACACCAAGAATCACAGGACCGGTGCTAAAGATCGGGTTTTGTATCTTACTTATCTGGGACTGTTGAAACAACTTGAGCCGAATGGACCCTTCGATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

258

Amino Acids

29.09

Weight (kDa)

9.19

Isoelectric Point (pI)

52.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7086 PF23324 119 - 250 3.3e-65 Domain of unknown function (DUF7086)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 520
AasI GACNNNNNNGTC 1 cut(s) 475
Acc36I ACCTGC 1 cut(s) 520
AccB1I GGYRCC 1 cut(s) 508
AciI CCGC 3 cut(s) 227, 256, 395
AcsI RAATTY 1 cut(s) 157
AcuI CTGAAG 3 cut(s) 207, 249, 315
AfaI GTAC 2 cut(s) 347, 665
AgeI ACCGGT 1 cut(s) 695
AgsI TTSAA 4 cut(s) 62, 84, 661, 742
AjnI CCWGG 1 cut(s) 239
AleI CACNNNNGTG 1 cut(s) 489
AloI GAACNNNNNNTCC 4 cut(s) 437, 469, 533, 565
AluBI AGCT 2 cut(s) 49, 269
AluI AGCT 2 cut(s) 49, 269
Alw21I GWGCWC 2 cut(s) 51, 340
Alw26I GTCTC 3 cut(s) 132, 138, 483
AlwNI CAGNNNCTG 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 157
AsiGI ACCGGT 1 cut(s) 695
Asp700I GAANNNNTTC 2 cut(s) 79, 665
AspS9I GGNCC 3 cut(s) 397, 693, 761
AsuC2I CCSGG 1 cut(s) 539
AsuHPI GGTGA 1 cut(s) 165
AvaII GGWCC 3 cut(s) 397, 693, 761
BaeGI GKGCMC 2 cut(s) 256, 511
BanI GGYRCC 1 cut(s) 508
BanII GRGCYC 1 cut(s) 51
BauI CACGAG 1 cut(s) 215
BbsI GAAGAC 2 cut(s) 296, 303
Bbv12I GWGCWC 2 cut(s) 51, 340
BbvI GCAGC 1 cut(s) 161
BccI CCATC 2 cut(s) 101, 577
BciT130I CCWGG 1 cut(s) 241
BclI TGATCA 2 cut(s) 22, 415
BcnI CCSGG 1 cut(s) 539
BcoDI GTCTC 3 cut(s) 132, 138, 483
BfmI CTRYAG 1 cut(s) 513
BfuAI ACCTGC 1 cut(s) 520
BglII AGATCT 1 cut(s) 260
BisI GCNGC 2 cut(s) 150, 228
BlsI GCNGC 2 cut(s) 151, 229
BmcAI AGTACT 1 cut(s) 665
Bme1390I CCNGG 2 cut(s) 241, 539
Bme18I GGWCC 3 cut(s) 397, 693, 761
BmgT120I GGNCC 3 cut(s) 397, 693, 761
BmiI GGNNCC 2 cut(s) 510, 763
BmrFI CCNGG 2 cut(s) 241, 539
BmsI GCATC 1 cut(s) 384
BpiI GAAGAC 2 cut(s) 296, 303
BpuEI CTTGAG 2 cut(s) 324, 770
BpuMI CCSGG 1 cut(s) 539
BsaJI CCNNGG 1 cut(s) 317
BsaWI WCCGGW 2 cut(s) 71, 695
Bse118I RCCGGY 1 cut(s) 695
Bse3DI GCAATG 1 cut(s) 501
BseBI CCWGG 1 cut(s) 241
BseDI CCNNGG 1 cut(s) 317
BseGI GGATG 2 cut(s) 93, 528
BseMI GCAATG 1 cut(s) 501
BseMII CTCAG 3 cut(s) 143, 494, 570
BseRI GAGGAG 1 cut(s) 96
BseSI GKGCMC 2 cut(s) 256, 511
BseXI GCAGC 1 cut(s) 161
BshNI GGYRCC 1 cut(s) 508
BshTI ACCGGT 1 cut(s) 695
BsiHKAI GWGCWC 2 cut(s) 51, 340
BsiSI CCGG 3 cut(s) 72, 539, 696
BslFI GGGAC 2 cut(s) 232, 747
BsmAI GTCTC 3 cut(s) 132, 138, 483
BsmBI CGTCTC 1 cut(s) 132
BsmFI GGGAC 2 cut(s) 232, 747
Bsp1286I GDGCHC 4 cut(s) 51, 256, 340, 511
Bsp143I GATC 6 cut(s) 22, 114, 260, 415, 439, 706
BspACI CCGC 3 cut(s) 227, 256, 395
BspCNI CTCAG 3 cut(s) 142, 493, 571
BspHI TCATGA 1 cut(s) 165
BspLI GGNNCC 2 cut(s) 510, 763
BspMAI CTGCAG 1 cut(s) 517
BspMI ACCTGC 1 cut(s) 520
BspQI GCTCTTC 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 508
BsrDI GCAATG 1 cut(s) 501
BsrFI RCCGGY 1 cut(s) 695
BssAI RCCGGY 1 cut(s) 695
BssECI CCNNGG 1 cut(s) 317
BssMI GATC 6 cut(s) 22, 114, 260, 415, 439, 706
BssSI CACGAG 1 cut(s) 215
BssT1I CCWWGG 1 cut(s) 317
Bst2BI CACGAG 1 cut(s) 215
Bst2UI CCWGG 1 cut(s) 241
Bst4CI ACNGT 1 cut(s) 738
Bst6I CTCTTC 2 cut(s) 39, 587
BstC8I GCNNGC 2 cut(s) 256, 674
BstDEI CTNAG 4 cut(s) 129, 278, 480, 579
BstF5I GGATG 2 cut(s) 93, 528
BstKTI GATC 6 cut(s) 25, 117, 263, 418, 442, 709
BstMAI GTCTC 3 cut(s) 132, 138, 483
BstMBI GATC 6 cut(s) 22, 114, 260, 415, 439, 706
BstMWI GCNNNNNNNGC 3 cut(s) 203, 227, 616
BstNI CCWGG 1 cut(s) 241
BstSCI CCNGG 2 cut(s) 239, 537
BstSFI CTRYAG 1 cut(s) 513
BstSLI GKGCMC 2 cut(s) 256, 511
BstV1I GCAGC 1 cut(s) 161
BstV2I GAAGAC 2 cut(s) 296, 303
BstX2I RGATCY 1 cut(s) 260
BstXI CCANNNNNNTGG 1 cut(s) 318
BstYI RGATCY 1 cut(s) 260
BtsCI GGATG 2 cut(s) 93, 528
BtsIMutI CAGTG 1 cut(s) 394
BveI ACCTGC 1 cut(s) 520
Cac8I GCNNGC 2 cut(s) 256, 674
CaiI CAGNNNCTG 1 cut(s) 230
CciI TCATGA 1 cut(s) 165
Cfr10I RCCGGY 1 cut(s) 695
Cfr13I GGNCC 3 cut(s) 397, 693, 761
CseI GACGC 1 cut(s) 114
Csp6I GTAC 2 cut(s) 346, 664
CspAI ACCGGT 1 cut(s) 695
CspCI CAANNNNNGTGG 2 cut(s) 535, 570
CviAII CATG 2 cut(s) 41, 166
CviJI RGCY 9 cut(s) 49, 221, 230, 269, 308, 323, 577, 610, 754
CviKI_1 RGCY 9 cut(s) 49, 221, 230, 269, 308, 323, 577, 610, 754
CviQI GTAC 2 cut(s) 346, 664
DdeI CTNAG 4 cut(s) 129, 278, 480, 579
DpnI GATC 6 cut(s) 24, 116, 262, 417, 441, 708
DpnII GATC 6 cut(s) 22, 114, 260, 415, 439, 706
DrdI GACNNNNNNGTC 1 cut(s) 475
DseDI GACNNNNNNGTC 1 cut(s) 475
Eam1104I CTCTTC 2 cut(s) 39, 587
EarI CTCTTC 2 cut(s) 39, 587
Ecl136II GAGCTC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 317
Eco24I GRGCYC 1 cut(s) 51
Eco47I GGWCC 3 cut(s) 397, 693, 761
Eco53kI GAGCTC 1 cut(s) 49
Eco57I CTGAAG 3 cut(s) 207, 249, 315
EcoICRI GAGCTC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 317
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 317
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 2 cut(s) 44, 169
FaiI YATR 7 cut(s) 42, 167, 302, 313, 426, 438, 474
FaqI GGGAC 2 cut(s) 232, 747
FatI CATG 2 cut(s) 40, 165
FauI CCCGC 1 cut(s) 263
FbaI TGATCA 2 cut(s) 22, 415
Fnu4HI GCNGC 2 cut(s) 150, 228
FokI GGATG 2 cut(s) 80, 535
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 2 cut(s) 150, 228
GluI GCNGC 2 cut(s) 150, 228
HapII CCGG 3 cut(s) 72, 539, 696
HgaI GACGC 1 cut(s) 114
Hin1II CATG 2 cut(s) 44, 169
HinfI GANTC 2 cut(s) 526, 685
HpaII CCGG 3 cut(s) 72, 539, 696
HphI GGTGA 1 cut(s) 165
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 2 cut(s) 420, 638
Hpy188III TCNNGA 5 cut(s) 118, 166, 215, 379, 443
Hpy8I GTNNAC 1 cut(s) 346
Hpy99I CGWCG 1 cut(s) 357
HpyAV CCTTC 4 cut(s) 68, 210, 278, 775
HpyCH4III ACNGT 1 cut(s) 738
HpyCH4IV ACGT 1 cut(s) 334
HpyCH4V TGCA 7 cut(s) 149, 405, 494, 515, 546, 645, 672
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 227, 616
HpyF3I CTNAG 4 cut(s) 129, 278, 480, 579
HpySE526I ACGT 1 cut(s) 334
Hsp92II CATG 2 cut(s) 44, 169
Ksp22I TGATCA 2 cut(s) 22, 415
Kzo9I GATC 6 cut(s) 22, 114, 260, 415, 439, 706
LguI GCTCTTC 1 cut(s) 39
LmnI GCTCC 2 cut(s) 54, 202
Lsp1109I GCAGC 1 cut(s) 161
LweI GCATC 1 cut(s) 384
MaeII ACGT 1 cut(s) 334
MalI GATC 6 cut(s) 24, 116, 262, 417, 441, 708
MboI GATC 6 cut(s) 22, 114, 260, 415, 439, 706
MboII GAAGA 6 cut(s) 47, 56, 255, 301, 308, 604
MfeI CAATTG 1 cut(s) 604
MflI RGATCY 1 cut(s) 260
MhlI GDGCHC 4 cut(s) 51, 256, 340, 511
MluCI AATT 4 cut(s) 157, 565, 604, 656
MlyI GAGTC 1 cut(s) 520
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 8 cut(s) 19, 117, 173, 201, 211, 217, 451, 588
MroXI GAANNNNTTC 2 cut(s) 79, 665
MslI CAYNNNNRTG 2 cut(s) 30, 489
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 3 cut(s) 72, 539, 696
MspR9I CCNGG 2 cut(s) 241, 539
MunI CAATTG 1 cut(s) 604
MvaI CCWGG 1 cut(s) 241
MwoI GCNNNNNNNGC 3 cut(s) 203, 227, 616
NciI CCSGG 1 cut(s) 539
NdeII GATC 6 cut(s) 22, 114, 260, 415, 439, 706
NlaIII CATG 2 cut(s) 44, 169
NlaIV GGNNCC 2 cut(s) 510, 763
OliI CACNNNNGTG 1 cut(s) 489
PagI TCATGA 1 cut(s) 165
PaqCI CACCTGC 1 cut(s) 520
PciSI GCTCTTC 1 cut(s) 39
PdmI GAANNNNTTC 2 cut(s) 79, 665
PfeI GAWTC 1 cut(s) 685
PflFI GACNNNGTC 1 cut(s) 124
PfoI TCCNGGA 1 cut(s) 537
PinAI ACCGGT 1 cut(s) 695
PkrI GCNGC 2 cut(s) 151, 229
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
Psp124BI GAGCTC 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 239
PspGI CCWGG 1 cut(s) 239
PspN4I GGNNCC 2 cut(s) 510, 763
PspPI GGNCC 3 cut(s) 397, 693, 761
PstI CTGCAG 1 cut(s) 517
PstNI CAGNNNCTG 1 cut(s) 230
PsuI RGATCY 1 cut(s) 260
PsyI GACNNNGTC 1 cut(s) 124
RsaI GTAC 2 cut(s) 347, 665
RsaNI GTAC 2 cut(s) 346, 664
RseI CAYNNNNRTG 2 cut(s) 30, 489
SacI GAGCTC 1 cut(s) 51
SapI GCTCTTC 1 cut(s) 39
SatI GCNGC 2 cut(s) 150, 228
Sau3AI GATC 6 cut(s) 22, 114, 260, 415, 439, 706
Sau96I GGNCC 3 cut(s) 397, 693, 761
ScaI AGTACT 1 cut(s) 665
SchI GAGTC 1 cut(s) 520
ScrFI CCNGG 2 cut(s) 241, 539
SduI GDGCHC 4 cut(s) 51, 256, 340, 511
SetI ASST 6 cut(s) 51, 245, 271, 337, 514, 599
SfaNI GCATC 1 cut(s) 384
SfcI CTRYAG 1 cut(s) 513
SinI GGWCC 3 cut(s) 397, 693, 761
SmiMI CAYNNNNRTG 2 cut(s) 30, 489
SmlI CTYRAG 2 cut(s) 339, 749
SmoI CTYRAG 2 cut(s) 339, 749
Sse9I AATT 4 cut(s) 157, 565, 604, 656
SsiI CCGC 3 cut(s) 227, 256, 395
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 2 cut(s) 239, 537
StyI CCWWGG 1 cut(s) 317
TaaI ACNGT 1 cut(s) 738
TaiI ACGT 1 cut(s) 337
TaqI TCGA 4 cut(s) 119, 355, 456, 768
TasI AATT 4 cut(s) 157, 565, 604, 656
TatI WGTACW 2 cut(s) 345, 663
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 1 cut(s) 685
TscAI CASTG 1 cut(s) 394
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 3 cut(s) 48, 57, 669
TspRI CASTG 1 cut(s) 394
Tth111I GACNNNGTC 1 cut(s) 124
VpaK11BI GGWCC 3 cut(s) 397, 693, 761
XapI RAATTY 1 cut(s) 157
XmnI GAANNNNTTC 2 cut(s) 79, 665
ZrmI AGTACT 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.