AT2G16190

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004320
Physical Location & Seq
Reverse (-)
7020474 .. 7021601
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G16190.1

Sequence Viewer

Length: 912 bp
ATGAGTGACGACGAAGATCTCGATTTGTCTTTAAGGTTATATACACAACCAAAAAAAACCGTTAATGAGAAAAACGGGTTGGTTCCTCAAAGACAAGAGGAACAAGGCGAGGTCATGCAACTCTTGACATCAGATCCTCCACAAAATACCCAACCCTCTCCTCCTCAACCAAATGACATGACTTCTTTTGCCAACGGAACAAACCATGTGATTGTTCCCACGCAGGCTCTTGAGCAAGCTGTACCGCCCCCAAACGTCTCAGTGAGGACCCCATTGCCTTATCAACCTTCAGAAGAAGTCCTTCCCCCTCCTCAACTGAACCAGGTTGCCACCGTGGCCTTGGCAACTCCCCGCAGAGGTCGTCCACCAGGAGGACAAGCACGTCGTAACTCAAAAAGACCGGTGGCTGGGGTTGAAAGAAACGTAGGTGACAGGGAGATCGTACCACCGTATCCATGGGCCACCAAAAAGCCAGGCAAAATCCAGTCTTTCAGAGACTTGTCTTCCAACAATATAAACGTCATCTCTGGACAAGTCCACTGCAAAACTTGCGATAGGACCGACACGGTTGAATATAATCTGGAGGAGAAATTTTCGGAATTGTATGGATACATTAAGGTGAACAAGGAGGAGATGCGCCATCGAGCCCCGGGTAGTTGGTCAACCCCGAAACTGATTCCGTGTAGGACATGCAAGAGTGAGATGAAGCCTGTGATGTCCGAGAGGAAGGAAGAAATTAACTGGTTGTTTCTTCTGTTAGGGCAAATGTTGGGATGCTGTACTTTGGACCAACTAAGGTACTTTTGTCAGTTGAATTCTAAACATCGAACCGGTTCTAAGGATCGTGTTGTCTACATAACTTATCTTAGTCTATGCAAACAGCTCGACCCCGAAGGACCATTTAACCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

303

Amino Acids

34.24

Weight (kDa)

8.55

Isoelectric Point (pI)

49.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7086 PF23324 165 - 295 3.1e-57 Domain of unknown function (DUF7086)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 381
AccI GTMKAC 1 cut(s) 852
AciI CCGC 2 cut(s) 245, 352
AclWI GGATC 2 cut(s) 128, 849
AcsI RAATTY 2 cut(s) 590, 814
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 4 cut(s) 243, 444, 781, 800
AfiI CCNNNNNNNGG 3 cut(s) 356, 371, 407
AgeI ACCGGT 2 cut(s) 400, 830
AgsI TTSAA 3 cut(s) 416, 572, 814
AjiI CACGTC 1 cut(s) 383
AjnI CCWGG 3 cut(s) 321, 367, 472
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AluBI AGCT 2 cut(s) 239, 883
AluI AGCT 2 cut(s) 239, 883
Alw26I GTCTC 2 cut(s) 262, 489
AlwI GGATC 2 cut(s) 128, 849
Ama87I CYCGRG 1 cut(s) 649
AoxI GGCC 2 cut(s) 336, 459
ApoI RAATTY 2 cut(s) 590, 814
AsiGI ACCGGT 2 cut(s) 400, 830
Asp700I GAANNNNTTC 2 cut(s) 300, 832
AspLEI GCGC 1 cut(s) 639
AspS9I GGNCC 5 cut(s) 267, 459, 558, 787, 896
AsuC2I CCSGG 2 cut(s) 650, 651
AsuHPI GGTGA 2 cut(s) 440, 631
AvaI CYCGRG 1 cut(s) 649
AvaII GGWCC 4 cut(s) 267, 558, 787, 896
BaeI ACNNNNGTAYC 4 cut(s) 434, 467, 790, 823
BanII GRGCYC 1 cut(s) 649
BbsI GAAGAC 1 cut(s) 495
BccI CCATC 1 cut(s) 648
BcgI CGANNNNNNTGC 2 cut(s) 865, 899
BciT130I CCWGG 3 cut(s) 323, 369, 474
BciVI GTATCC 2 cut(s) 462, 602
BcnI CCSGG 2 cut(s) 650, 651
BcoDI GTCTC 2 cut(s) 262, 489
BfuI GTATCC 2 cut(s) 462, 602
BglI GCCNNNNNGGC 1 cut(s) 335
BglII AGATCT 1 cut(s) 16
Bme1390I CCNGG 5 cut(s) 323, 369, 474, 650, 651
Bme18I GGWCC 4 cut(s) 267, 558, 787, 896
BmeT110I CYCGRG 1 cut(s) 649
BmgBI CACGTC 1 cut(s) 383
BmgT120I GGNCC 5 cut(s) 267, 459, 558, 787, 896
BmiI GGNNCC 2 cut(s) 84, 269
BmrFI CCNGG 5 cut(s) 323, 369, 474, 650, 651
BmsI GCATC 2 cut(s) 624, 764
BpiI GAAGAC 1 cut(s) 495
BpmI CTGGAG 1 cut(s) 602
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 2 cut(s) 650, 651
BsaJI CCNNGG 5 cut(s) 333, 339, 455, 648, 649
BsaWI WCCGGW 2 cut(s) 400, 830
Bsc4I CCNNNNNNNGG 3 cut(s) 356, 371, 407
Bse118I RCCGGY 2 cut(s) 400, 830
Bse1I ACTGG 2 cut(s) 484, 746
Bse3DI GCAATG 1 cut(s) 272
BseBI CCWGG 3 cut(s) 323, 369, 474
BseDI CCNNGG 5 cut(s) 333, 339, 455, 648, 649
BseGI GGATG 1 cut(s) 779
BseLI CCNNNNNNNGG 3 cut(s) 356, 371, 407
BseMI GCAATG 1 cut(s) 272
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 2 cut(s) 484, 746
BseRI GAGGAG 5 cut(s) 150, 153, 300, 599, 644
BseYI CCCAGC 1 cut(s) 407
BshFI GGCC 2 cut(s) 338, 461
BshTI ACCGGT 2 cut(s) 400, 830
BsiHKCI CYCGRG 1 cut(s) 649
BsiSI CCGG 3 cut(s) 401, 650, 831
BslI CCNNNNNNNGG 3 cut(s) 356, 371, 407
BsmAI GTCTC 2 cut(s) 262, 489
BsmBI CGTCTC 1 cut(s) 262
BsnI GGCC 2 cut(s) 338, 461
BsoBI CYCGRG 1 cut(s) 649
Bsp1286I GDGCHC 1 cut(s) 649
Bsp143I GATC 4 cut(s) 16, 133, 438, 841
Bsp19I CCATGG 1 cut(s) 455
BspACI CCGC 2 cut(s) 245, 352
BspANI GGCC 2 cut(s) 338, 461
BspCNI CTCAG 1 cut(s) 272
BspLI GGNNCC 2 cut(s) 84, 269
BspPI GGATC 2 cut(s) 128, 849
BsrDI GCAATG 1 cut(s) 272
BsrFI RCCGGY 2 cut(s) 400, 830
BsrI ACTGG 2 cut(s) 484, 746
BssAI RCCGGY 2 cut(s) 400, 830
BssECI CCNNGG 5 cut(s) 333, 339, 455, 648, 649
BssMI GATC 4 cut(s) 16, 133, 438, 841
BssT1I CCWWGG 2 cut(s) 339, 455
Bst2UI CCWGG 3 cut(s) 323, 369, 474
Bst4CI ACNGT 4 cut(s) 61, 334, 450, 568
BstAPI GCANNNNNTGC 1 cut(s) 549
BstC8I GCNNGC 2 cut(s) 225, 237
BstDEI CTNAG 4 cut(s) 259, 794, 837, 866
BstDSI CCRYGG 2 cut(s) 333, 455
BstF5I GGATG 1 cut(s) 779
BstHHI GCGC 1 cut(s) 639
BstKTI GATC 4 cut(s) 19, 136, 441, 844
BstMAI GTCTC 2 cut(s) 262, 489
BstMBI GATC 4 cut(s) 16, 133, 438, 841
BstMWI GCNNNNNNNGC 2 cut(s) 335, 549
BstNI CCWGG 3 cut(s) 323, 369, 474
BstNSI RCATGY 1 cut(s) 693
BstSCI CCNGG 5 cut(s) 321, 367, 472, 648, 649
BstV2I GAAGAC 1 cut(s) 495
BstX2I RGATCY 2 cut(s) 16, 133
BstYI RGATCY 2 cut(s) 16, 133
BsuI GTATCC 2 cut(s) 462, 602
BsuRI GGCC 2 cut(s) 338, 461
BtgI CCRYGG 2 cut(s) 333, 455
BtrI CACGTC 1 cut(s) 383
BtsCI GGATG 1 cut(s) 779
BtsI GCAGTG 1 cut(s) 538
BtsIMutI CAGTG 2 cut(s) 267, 538
Cac8I GCNNGC 2 cut(s) 225, 237
CfoI GCGC 1 cut(s) 639
Cfr10I RCCGGY 2 cut(s) 400, 830
Cfr13I GGNCC 5 cut(s) 267, 459, 558, 787, 896
Cfr9I CCCGGG 1 cut(s) 649
CsiI ACCWGGT 1 cut(s) 321
Csp6I GTAC 4 cut(s) 242, 443, 780, 799
CspAI ACCGGT 2 cut(s) 400, 830
CviAII CATG 5 cut(s) 115, 178, 206, 456, 690
CviJI RGCY 9 cut(s) 227, 239, 338, 407, 461, 472, 647, 709, 883
CviKI_1 RGCY 9 cut(s) 227, 239, 338, 407, 461, 472, 647, 709, 883
CviQI GTAC 4 cut(s) 242, 443, 780, 799
DdeI CTNAG 4 cut(s) 259, 794, 837, 866
DpnI GATC 4 cut(s) 18, 135, 440, 843
DpnII GATC 4 cut(s) 16, 133, 438, 841
DrdI GACNNNNNNGTC 1 cut(s) 381
DseDI GACNNNNNNGTC 1 cut(s) 381
Eco130I CCWWGG 2 cut(s) 339, 455
Eco24I GRGCYC 1 cut(s) 649
Eco47I GGWCC 4 cut(s) 267, 558, 787, 896
Eco57I CTGAAG 1 cut(s) 273
Eco88I CYCGRG 1 cut(s) 649
EcoO109I RGGNCCY 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 814
EcoRII CCWGG 3 cut(s) 321, 367, 472
EcoT14I CCWWGG 2 cut(s) 339, 455
EcoT38I GRGCYC 1 cut(s) 649
ErhI CCWWGG 2 cut(s) 339, 455
Esp3I CGTCTC 1 cut(s) 262
FaeI CATG 5 cut(s) 118, 181, 209, 459, 693
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FatI CATG 5 cut(s) 114, 177, 205, 455, 689
FauI CCCGC 1 cut(s) 359
FblI GTMKAC 1 cut(s) 852
FokI GGATG 1 cut(s) 786
FriOI GRGCYC 1 cut(s) 649
GlaI GCGC 1 cut(s) 638
GsaI CCCAGC 1 cut(s) 411
GsuI CTGGAG 1 cut(s) 602
HaeIII GGCC 2 cut(s) 338, 461
HapII CCGG 3 cut(s) 401, 650, 831
HhaI GCGC 1 cut(s) 639
Hin1II CATG 5 cut(s) 118, 181, 209, 459, 693
Hin6I GCGC 1 cut(s) 637
HinP1I GCGC 1 cut(s) 637
HincII GTYRAC 1 cut(s) 663
HindII GTYRAC 1 cut(s) 663
HinfI GANTC 1 cut(s) 676
HpaII CCGG 3 cut(s) 401, 650, 831
HphI GGTGA 2 cut(s) 440, 631
Hpy166II GTNNAC 5 cut(s) 365, 538, 622, 663, 853
Hpy188I TCNGA 5 cut(s) 133, 292, 494, 598, 721
Hpy188III TCNNGA 5 cut(s) 20, 124, 230, 528, 581
Hpy8I GTNNAC 5 cut(s) 365, 538, 622, 663, 853
Hpy99I CGWCG 2 cut(s) 14, 387
HpyAV CCTTC 4 cut(s) 297, 311, 721, 887
HpyCH4III ACNGT 4 cut(s) 61, 334, 450, 568
HpyCH4IV ACGT 4 cut(s) 255, 382, 423, 519
HpyCH4V TGCA 4 cut(s) 118, 543, 693, 876
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 549
HpyF3I CTNAG 4 cut(s) 259, 794, 837, 866
HpySE526I ACGT 4 cut(s) 255, 382, 423, 519
Hsp92II CATG 5 cut(s) 118, 181, 209, 459, 693
HspAI GCGC 1 cut(s) 637
Kzo9I GATC 4 cut(s) 16, 133, 438, 841
LweI GCATC 2 cut(s) 624, 764
MabI ACCWGGT 1 cut(s) 321
MaeII ACGT 4 cut(s) 255, 382, 423, 519
MaeIII GTNAC 3 cut(s) 5, 386, 428
MalI GATC 4 cut(s) 18, 135, 440, 843
MboI GATC 4 cut(s) 16, 133, 438, 841
MboII GAAGA 5 cut(s) 26, 305, 495, 743, 743
MflI RGATCY 2 cut(s) 16, 133
MhlI GDGCHC 1 cut(s) 649
MluCI AATT 4 cut(s) 590, 599, 735, 814
MmeI TCCRAC 1 cut(s) 531
MroXI GAANNNNTTC 2 cut(s) 300, 832
MseI TTAA 5 cut(s) 32, 63, 615, 738, 903
MslI CAYNNNNRTG 1 cut(s) 617
MspI CCGG 3 cut(s) 401, 650, 831
MspR9I CCNGG 5 cut(s) 323, 369, 474, 650, 651
MvaI CCWGG 3 cut(s) 323, 369, 474
MwoI GCNNNNNNNGC 2 cut(s) 335, 549
NciI CCSGG 2 cut(s) 650, 651
NcoI CCATGG 1 cut(s) 455
NdeII GATC 4 cut(s) 16, 133, 438, 841
NlaIII CATG 5 cut(s) 118, 181, 209, 459, 693
NlaIV GGNNCC 2 cut(s) 84, 269
NmuCI GTSAC 2 cut(s) 5, 428
NspI RCATGY 1 cut(s) 693
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PdmI GAANNNNTTC 2 cut(s) 300, 832
PfeI GAWTC 1 cut(s) 676
PinAI ACCGGT 2 cut(s) 400, 830
PpuMI RGGWCCY 1 cut(s) 267
Psp5II RGGWCCY 1 cut(s) 267
Psp6I CCWGG 3 cut(s) 321, 367, 472
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 3 cut(s) 321, 367, 472
PspN4I GGNNCC 2 cut(s) 84, 269
PspPI GGNCC 5 cut(s) 267, 459, 558, 787, 896
PspPPI RGGWCCY 1 cut(s) 267
PsuI RGATCY 2 cut(s) 16, 133
RsaI GTAC 4 cut(s) 243, 444, 781, 800
RsaNI GTAC 4 cut(s) 242, 443, 780, 799
RseI CAYNNNNRTG 1 cut(s) 617
SaqAI TTAA 5 cut(s) 32, 63, 615, 738, 903
Sau3AI GATC 4 cut(s) 16, 133, 438, 841
Sau96I GGNCC 5 cut(s) 267, 459, 558, 787, 896
ScrFI CCNGG 5 cut(s) 323, 369, 474, 650, 651
SduI GDGCHC 1 cut(s) 649
SexAI ACCWGGT 1 cut(s) 321
SfaNI GCATC 2 cut(s) 624, 764
SinI GGWCC 4 cut(s) 267, 558, 787, 896
SmaI CCCGGG 1 cut(s) 651
SmiMI CAYNNNNRTG 1 cut(s) 617
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 4 cut(s) 590, 599, 735, 814
SsiI CCGC 2 cut(s) 245, 352
StyD4I CCNGG 5 cut(s) 321, 367, 472, 648, 649
StyI CCWWGG 2 cut(s) 339, 455
TaaI ACNGT 4 cut(s) 61, 334, 450, 568
TaiI ACGT 4 cut(s) 258, 385, 426, 522
TaqI TCGA 4 cut(s) 21, 643, 826, 885
TaqII GACCGA 1 cut(s) 575
TasI AATT 4 cut(s) 590, 599, 735, 814
TatI WGTACW 1 cut(s) 779
TfiI GAWTC 1 cut(s) 676
Tru1I TTAA 5 cut(s) 32, 63, 615, 738, 903
Tru9I TTAA 5 cut(s) 32, 63, 615, 738, 903
TscAI CASTG 2 cut(s) 267, 545
TseFI GTSAC 2 cut(s) 5, 428
Tsp45I GTSAC 2 cut(s) 5, 428
TspDTI ATGAA 1 cut(s) 719
TspGWI ACGGA 2 cut(s) 210, 669
TspMI CCCGGG 1 cut(s) 649
TspRI CASTG 2 cut(s) 267, 545
VpaK11BI GGWCC 4 cut(s) 267, 558, 787, 896
XapI RAATTY 2 cut(s) 590, 814
XceI RCATGY 1 cut(s) 693
XcmI CCANNNNNNNNNTGG 2 cut(s) 337, 453
XmaI CCCGGG 1 cut(s) 649
XmiI GTMKAC 1 cut(s) 852
XmnI GAANNNNTTC 2 cut(s) 300, 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.