Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004320

Physical Location & Seq

Genomic Coordinates Forward (+)

24392417 .. 24393559

Gene Structure 1143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G247700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAAGAAAAACTTCAAACCCTCTGAAATTGATGAAGAACATGAAGATCTCCTGGCCCTTTCCCTCTCAACGCCTCATAGCCAATACATGCATTCAAACTCAAGCCAACCTCCTCCTCTCTTGGCTTCAACACCACCACCACAACGCTTGCCTCTCTTTTCAGCAGTGCCACAGCCACCGCCACCTTTTGATTTTCACCTCTACCATCTCCCACACAGCCCTCCTGCCTTTCACCATGACCTACCAGGCCCGTCCCGTCCGACTCGAACCCGAAGATCCCCTGCTCGAACCCTAAGCCAAGGCAAAACAGAAACGATACCAGCCCCATACCCTTGGGCTACAACAAAACGTGCCACGGTCCACAACCTTCACTACCTGCAGTCCAATCACGTGAATACGATCACTGGCCTTGTTCAATGCAAGAAATGCGACCAAAGCTTTGAGATTTCATATAATTTTCCCAAGAAATTCCTCGAAGTTGCGAAGTTCGTTTCGGAACACAAATCCGCCATGCATGACAGGGCACCAGAATTTTGGATGGATCCCACGTTGCCCGATTGCAATCATTGTCATCAGAGCAAATGCATGAAGCCTGTGATTTCCAAGAAACGGTCGATCAATTGGCTCTTCTTGCTTTTGGGTCAGATGCTTGGATGCTGTAAGCTTTCTGAGTTGAAGTATTTCTGCAAGCACACCAAGAATCACAGGACTGGCGCCAAAGATAGAGTCTTGTACCTTACTTATTTGGGCATCTGCAAACAGGTTGATCCCAGCGGACCCTTTGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

264

Amino Acids

30.0

Weight (kDa)

9.24

Isoelectric Point (pI)

67.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49330 AT2G16190 AT2G16190
fragaria_vesca	FvH4_1g24220 FvH4_2g08460
malus_domestica	MD04G1118400.v1.1 MD10G1078300.v1.1
prunus_persica	Prupe.6G247500_v2.0.a1 Prupe.6G247600_v2.0.a1 Prupe.6G247700_v2.0.a1 Prupe.8G100200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0467741 RchiOBHm_Chr6g0263791
rosa_laevigata	RLG00000014312 RLG00000024477
rosa_multiflora	Rmu_sc0001793.1_g000022 Rmu_sc0009383.1_g000005
rosa_roxburghii	Rroxscaffold_6G00413460 Rroxscaffold_7G00203930
rosa_rugosa	Rorug03G0089400 Rorug03G0089500 Rorug06G0006200
rosa_samantha	Rh3AG137900 Rh3BG159200 Rh3CG159100 Rh3DG159600 Rh6AG125600 Rh6BG122100 Rh6CG120400 Rh6DG108200
rosa_wichuraiana	Rw3G013060 Rw6G010930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	384
AccB1I	GGYRCC	2 cut(s)	523, 713
AciI	CCGC	3 cut(s)	179, 507, 774
AclWI	GGATC	4 cut(s)	270, 536, 549, 761
AcsI	RAATTY	2 cut(s)	467, 530
AcvI	CACGTG	1 cut(s)	391
AcyI	GRCGYC	1 cut(s)	714
AfaI	GTAC	1 cut(s)	734
AfiI	CCNNNNNNNGG	1 cut(s)	609
AgsI	TTSAA	5 cut(s)	16, 96, 129, 416, 676
AjnI	CCWGG	2 cut(s)	51, 244
AluBI	AGCT	2 cut(s)	438, 664
AluI	AGCT	2 cut(s)	438, 664
AlwI	GGATC	4 cut(s)	270, 536, 549, 761
AoxI	GGCC	3 cut(s)	54, 247, 406
ApoI	RAATTY	2 cut(s)	467, 530
ArsI	GACNNNNNNTTYG	4 cut(s)	422, 454, 711, 743
Asp700I	GAANNNNTTC	2 cut(s)	11, 680
AspLEI	GCGC	1 cut(s)	716
AspS9I	GGNCC	4 cut(s)	55, 248, 358, 776
AsuHPI	GGTGA	2 cut(s)	188, 224
AvaII	GGWCC	2 cut(s)	358, 776
BaeGI	GKGCMC	1 cut(s)	526
BamHI	GGATCC	1 cut(s)	541
BanI	GGYRCC	2 cut(s)	523, 713
BbrPI	CACGTG	1 cut(s)	391
BccI	CCATC	2 cut(s)	213, 532
BciT130I	CCWGG	2 cut(s)	53, 246
BfmI	CTRYAG	1 cut(s)	377
BfoI	RGCGCY	1 cut(s)	717
BfuAI	ACCTGC	1 cut(s)	384
BglII	AGATCT	1 cut(s)	46
Bme1390I	CCNGG	2 cut(s)	53, 246
Bme18I	GGWCC	2 cut(s)	358, 776
BmgT120I	GGNCC	4 cut(s)	55, 248, 358, 776
BmiI	GGNNCC	4 cut(s)	525, 543, 715, 778
BmrFI	CCNGG	2 cut(s)	53, 246
BmsI	GCATC	4 cut(s)	636, 644, 759, 775
Bpu10I	CCTNAGC	1 cut(s)	293
BpuEI	CTTGAG	1 cut(s)	85
BsaAI	YACGTR	1 cut(s)	391
BsaBI	GATNNNNATC	1 cut(s)	561
BsaHI	GRCGYC	1 cut(s)	714
BsaJI	CCNNGG	3 cut(s)	298, 332, 354
Bsc4I	CCNNNNNNNGG	1 cut(s)	609
Bse1I	ACTGG	2 cut(s)	409, 715
Bse8I	GATNNNNATC	1 cut(s)	561
BseBI	CCWGG	2 cut(s)	53, 246
BseDI	CCNNGG	3 cut(s)	298, 332, 354
BseGI	GGATG	2 cut(s)	543, 659
BseJI	GATNNNNATC	1 cut(s)	561
BseLI	CCNNNNNNNGG	1 cut(s)	609
BseMII	CTCAG	1 cut(s)	660
BseNI	ACTGG	2 cut(s)	409, 715
BseRI	GAGGAG	2 cut(s)	102, 105
BseSI	GKGCMC	1 cut(s)	526
BseYI	CCCAGC	1 cut(s)	770
Bsh1285I	CGRYCG	1 cut(s)	614
BshFI	GGCC	3 cut(s)	56, 249, 408
BshNI	GGYRCC	2 cut(s)	523, 713
BsiEI	CGRYCG	1 cut(s)	614
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	1 cut(s)	609
BsmFI	GGGAC	1 cut(s)	238
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	3 cut(s)	56, 249, 408
Bsp1286I	GDGCHC	1 cut(s)	526
Bsp143I	GATC	6 cut(s)	46, 275, 399, 541, 615, 766
BspACI	CCGC	3 cut(s)	179, 507, 774
BspANI	GGCC	3 cut(s)	56, 249, 408
BspCNI	CTCAG	1 cut(s)	661
BspLI	GGNNCC	4 cut(s)	525, 543, 715, 778
BspMAI	CTGCAG	1 cut(s)	381
BspMI	ACCTGC	1 cut(s)	384
BspPI	GGATC	4 cut(s)	270, 536, 549, 761
BspQI	GCTCTTC	1 cut(s)	632
BspT107I	GGYRCC	2 cut(s)	523, 713
BsrI	ACTGG	2 cut(s)	409, 715
BssECI	CCNNGG	3 cut(s)	298, 332, 354
BssMI	GATC	6 cut(s)	46, 275, 399, 541, 615, 766
BssNI	GRCGYC	1 cut(s)	714
BssT1I	CCWWGG	2 cut(s)	298, 332
Bst2UI	CCWGG	2 cut(s)	53, 246
Bst4CI	ACNGT	2 cut(s)	358, 612
Bst6I	CTCTTC	1 cut(s)	632
BstACI	GRCGYC	1 cut(s)	714
BstAPI	GCANNNNNTGC	1 cut(s)	426
BstBAI	YACGTR	1 cut(s)	391
BstC8I	GCNNGC	2 cut(s)	149, 689
BstDEI	CTNAG	3 cut(s)	293, 669, 789
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	2 cut(s)	543, 659
BstH2I	RGCGCY	1 cut(s)	717
BstHHI	GCGC	1 cut(s)	716
BstKTI	GATC	6 cut(s)	49, 278, 402, 544, 618, 769
BstMBI	GATC	6 cut(s)	46, 275, 399, 541, 615, 766
BstMCI	CGRYCG	1 cut(s)	614
BstMWI	GCNNNNNNNGC	3 cut(s)	426, 435, 631
BstNI	CCWGG	2 cut(s)	53, 246
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	2 cut(s)	51, 244
BstSFI	CTRYAG	1 cut(s)	377
BstSLI	GKGCMC	1 cut(s)	526
BstX2I	RGATCY	3 cut(s)	46, 275, 541
BstXI	CCANNNNNNTGG	2 cut(s)	333, 534
BstYI	RGATCY	3 cut(s)	46, 275, 541
BsuRI	GGCC	3 cut(s)	56, 249, 408
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	2 cut(s)	543, 659
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	2 cut(s)	171, 402
BveI	ACCTGC	1 cut(s)	384
Cac8I	GCNNGC	2 cut(s)	149, 689
CfoI	GCGC	1 cut(s)	716
Cfr13I	GGNCC	4 cut(s)	55, 248, 358, 776
Csp6I	GTAC	1 cut(s)	733
CspCI	CAANNNNNGTGG	2 cut(s)	129, 164
CviAII	CATG	6 cut(s)	41, 88, 236, 511, 515, 586
CviQI	GTAC	1 cut(s)	733
DdeI	CTNAG	3 cut(s)	293, 669, 789
DinI	GGCGCC	1 cut(s)	715
DpnI	GATC	6 cut(s)	48, 277, 401, 543, 617, 768
DpnII	GATC	6 cut(s)	46, 275, 399, 541, 615, 766
Eam1104I	CTCTTC	1 cut(s)	632
EarI	CTCTTC	1 cut(s)	632
EciI	GGCGGA	1 cut(s)	496
Eco130I	CCWWGG	2 cut(s)	298, 332
Eco47I	GGWCC	2 cut(s)	358, 776
Eco72I	CACGTG	1 cut(s)	391
EcoRII	CCWGG	2 cut(s)	51, 244
EcoT14I	CCWWGG	2 cut(s)	298, 332
EcoT22I	ATGCAT	3 cut(s)	93, 516, 587
EgeI	GGCGCC	1 cut(s)	715
EheI	GGCGCC	1 cut(s)	715
ErhI	CCWWGG	2 cut(s)	298, 332
FaeI	CATG	6 cut(s)	44, 91, 239, 514, 518, 589
FalI	AAGNNNNNCTT	1 cut(s)	28
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	6 cut(s)	40, 87, 235, 510, 514, 585
FokI	GGATG	2 cut(s)	550, 666
GlaI	GCGC	1 cut(s)	715
GsaI	CCCAGC	1 cut(s)	774
HaeII	RGCGCY	1 cut(s)	717
HaeIII	GGCC	3 cut(s)	56, 249, 408
HhaI	GCGC	1 cut(s)	716
Hin1I	GRCGYC	1 cut(s)	714
Hin1II	CATG	6 cut(s)	44, 91, 239, 514, 518, 589
Hin6I	GCGC	1 cut(s)	714
HinP1I	GCGC	1 cut(s)	714
HindIII	AAGCTT	2 cut(s)	436, 662
HinfI	GANTC	3 cut(s)	262, 700, 726
HphI	GGTGA	2 cut(s)	188, 224
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	6 cut(s)	25, 261, 496, 576, 645, 670
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	1 cut(s)	377
HpyCH4III	ACNGT	2 cut(s)	358, 612
HpyCH4IV	ACGT	3 cut(s)	349, 390, 548
HpyCH4V	TGCA	8 cut(s)	91, 379, 420, 514, 561, 585, 687, 756
HpyF10VI	GCNNNNNNNGC	3 cut(s)	426, 435, 631
HpyF3I	CTNAG	3 cut(s)	293, 669, 789
HpySE526I	ACGT	3 cut(s)	349, 390, 548
Hsp92I	GRCGYC	1 cut(s)	714
Hsp92II	CATG	6 cut(s)	44, 91, 239, 514, 518, 589
HspAI	GCGC	1 cut(s)	714
KasI	GGCGCC	1 cut(s)	713
Kzo9I	GATC	6 cut(s)	46, 275, 399, 541, 615, 766
LguI	GCTCTTC	1 cut(s)	632
LweI	GCATC	4 cut(s)	636, 644, 759, 775
MaeII	ACGT	3 cut(s)	349, 390, 548
MalI	GATC	6 cut(s)	48, 277, 401, 543, 617, 768
MboI	GATC	6 cut(s)	46, 275, 399, 541, 615, 766
MboII	GAAGA	5 cut(s)	16, 47, 56, 285, 619
MfeI	CAATTG	1 cut(s)	619
MflI	RGATCY	3 cut(s)	46, 275, 541
MhlI	GDGCHC	1 cut(s)	526
MluCI	AATT	5 cut(s)	27, 454, 467, 530, 619
Mly113I	GGCGCC	1 cut(s)	714
MlyI	GAGTC	2 cut(s)	256, 735
MmeI	TCCRAC	1 cut(s)	284
Mph1103I	ATGCAT	3 cut(s)	93, 516, 587
MroXI	GAANNNNTTC	2 cut(s)	11, 680
MspA1I	CMGCKG	1 cut(s)	774
MspR9I	CCNGG	2 cut(s)	53, 246
MunI	CAATTG	1 cut(s)	619
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	2 cut(s)	53, 246
MwoI	GCNNNNNNNGC	3 cut(s)	426, 435, 631
NarI	GGCGCC	1 cut(s)	714
NdeII	GATC	6 cut(s)	46, 275, 399, 541, 615, 766
NlaIII	CATG	6 cut(s)	44, 91, 239, 514, 518, 589
NlaIV	GGNNCC	4 cut(s)	525, 543, 715, 778
NsiI	ATGCAT	3 cut(s)	93, 516, 587
NspI	RCATGY	1 cut(s)	91
PciSI	GCTCTTC	1 cut(s)	632
PctI	GAATGC	1 cut(s)	91
PdmI	GAANNNNTTC	2 cut(s)	11, 680
PfeI	GAWTC	1 cut(s)	700
PleI	GAGTC	2 cut(s)	256, 734
PluTI	GGCGCC	1 cut(s)	717
PmaCI	CACGTG	1 cut(s)	391
PmlI	CACGTG	1 cut(s)	391
PpsI	GAGTC	2 cut(s)	256, 734
Ppu21I	YACGTR	1 cut(s)	391
Psp6I	CCWGG	2 cut(s)	51, 244
PspCI	CACGTG	1 cut(s)	391
PspFI	CCCAGC	1 cut(s)	770
PspGI	CCWGG	2 cut(s)	51, 244
PspN4I	GGNNCC	4 cut(s)	525, 543, 715, 778
PspPI	GGNCC	4 cut(s)	55, 248, 358, 776
PstI	CTGCAG	1 cut(s)	381
PsuI	RGATCY	3 cut(s)	46, 275, 541
RsaI	GTAC	1 cut(s)	734
RsaNI	GTAC	1 cut(s)	733
SapI	GCTCTTC	1 cut(s)	632
Sau3AI	GATC	6 cut(s)	46, 275, 399, 541, 615, 766
Sau96I	GGNCC	4 cut(s)	55, 248, 358, 776
SchI	GAGTC	2 cut(s)	256, 735
ScrFI	CCNGG	2 cut(s)	53, 246
SduI	GDGCHC	1 cut(s)	526
SfaNI	GCATC	4 cut(s)	636, 644, 759, 775
SfcI	CTRYAG	1 cut(s)	377
SfoI	GGCGCC	1 cut(s)	715
SinI	GGWCC	2 cut(s)	358, 776
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
Sse9I	AATT	5 cut(s)	27, 454, 467, 530, 619
SsiI	CCGC	3 cut(s)	179, 507, 774
SspDI	GGCGCC	1 cut(s)	713
StyD4I	CCNGG	2 cut(s)	51, 244
StyI	CCWWGG	2 cut(s)	298, 332
TaaI	ACNGT	2 cut(s)	358, 612
TaiI	ACGT	3 cut(s)	352, 393, 551
TaqI	TCGA	4 cut(s)	265, 286, 474, 614
TasI	AATT	5 cut(s)	27, 454, 467, 530, 619
TfiI	GAWTC	1 cut(s)	700
TscAI	CASTG	2 cut(s)	171, 409
TspDTI	ATGAA	5 cut(s)	17, 48, 57, 438, 602
TspRI	CASTG	2 cut(s)	171, 409
VpaK11BI	GGWCC	2 cut(s)	358, 776
XapI	RAATTY	2 cut(s)	467, 530
XceI	RCATGY	1 cut(s)	91
XmnI	GAANNNNTTC	2 cut(s)	11, 680
Zsp2I	ATGCAT	3 cut(s)	93, 516, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.