Rh6BG122100

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0004320
Physical Location & Seq
Forward (+)
18983288 .. 18984781
1494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG122100.1

Sequence Viewer

Length: 1206 bp
ATGGACAACGAGGAAGAAGAAAGGCAGAGCAAGAATCTGCAAGAGATGATCAACCATAAACGAAAGAACAGTCAAGAACAAGATCTCAATCACCAAGTCACATCATCTACTAGTTTCCCCGGTGGCACATCATCAACTAGTTTCTCCGGTGAGGAGGAGGAGGAGGACATGCTGGAACTCCGCCTCAATTCTCACCGCCCCTCTAGGCCTCGCCCAAGTGTGCCGCAACCACAGACCCAAATCCCTGTACTGCCAGAGCTTCATCAACTCTCCAACACACACTCTCGCCCAAATCTACTGCCAACAGCACAACCAGAGGCTCAAAGCGCTCCATCAAATCATCTTCAACTCTCAAACACACGTCCTCTTTACAGAGGTGAACCCTTGCTGCTTGCGCCAGAGCCTCTCCTTTATCCCCTCAATGGCTTTTATCGCCCTAATGGTGGTCAGTCCTCGATTACACCAGTCCAGGCGGCCGCACCTCCACCGCCACCTCCACCTCCACCTCCACGGTCACAACCACCGGTGGTTCTTCATCAAGATGTGAGGCCAAGAGCCGTGCAGATGCCACAACCACAGGTGGTTTTTCATCAAGATGTGAGGCCAAGAGCCATGCAGATGCCACCTCTACGGCCACCACCTGTGGGGCCAAGACCACTAGGGATTCGGCCAGTCCGCGCGCGCCGGAACTCGACTCAGGCTCCAGGCCAAGGAAAGAGCGAGACGGTGCCGGCTCCGTTTCCTTGGGCCACCACAAAGCGAGCCACGGTCCACAACCTGAATTACTTGAGGACACATAATATAGTGACCATCACCGGTGACGTACAGTGCAAGCGATGCGAGAAGCAGTACGAGATTGAGTACAATCTGGAGCAGAAATTTATGGAGGTGGGGACTTACATTGTTGAGAACAGGATGAGGATGCATGACCGAGCACCGGATATGTGGAGGGACCCAGTACTTCCGGCTTGCAAGTACTGCGAGCAAGAGAACAGTGCGAGGCCGGTCTTAGCTGACAAAAAGAGGGCGATCAATTGGTTGTTTCTGTTTTTGGGACAGATGCTTGGGTGTTGCACACTCGAACAGTTGAAATATTTCTGTAAGCACACAAAGAATCATCGAACTGGAGCCAAGGACCGGGTTCTTTATCTAACTTTTCTGTGTTTGTGCAAACAGCTTGATCCCACTGGGCCTTTTGATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

401

Amino Acids

45.59

Weight (kDa)

9.1

Isoelectric Point (pI)

72.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7086 PF23324 260 - 393 5.9e-65 Domain of unknown function (DUF7086)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 727
AccII CGCG 3 cut(s) 678, 680, 682
AciI CCGC 7 cut(s) 181, 196, 224, 473, 477, 488, 676
AclWI GGATC 1 cut(s) 1175
AcoI YGGCCR 3 cut(s) 474, 632, 668
AcsI RAATTY 1 cut(s) 878
AfaI GTAC 6 cut(s) 249, 825, 851, 863, 960, 977
AfeI AGCGCT 1 cut(s) 328
AfiI CCNNNNNNNGG 6 cut(s) 422, 443, 644, 710, 937, 1137
AflIII ACRYGT 1 cut(s) 359
AgeI ACCGGT 2 cut(s) 523, 815
AgsI TTSAA 2 cut(s) 347, 1090
AhlI ACTAGT 2 cut(s) 110, 137
AjiI CACGTC 1 cut(s) 362
AjnI CCWGG 2 cut(s) 468, 703
AluBI AGCT 3 cut(s) 259, 1013, 1177
AluI AGCT 3 cut(s) 259, 1013, 1177
Alw21I GWGCWC 1 cut(s) 937
Alw26I GTCTC 1 cut(s) 716
AlwI GGATC 1 cut(s) 1175
Aor51HI AGCGCT 1 cut(s) 328
ApeKI GCWGC 1 cut(s) 388
ApoI RAATTY 1 cut(s) 878
ArsI GACNNNNNNTTYG 2 cut(s) 55, 87
AsiGI ACCGGT 2 cut(s) 523, 815
Asp700I GAANNNNTTC 1 cut(s) 1094
AspLEI GCGC 5 cut(s) 329, 397, 680, 682, 684
AspS9I GGNCC 6 cut(s) 647, 747, 769, 952, 1135, 1190
AsuC2I CCSGG 2 cut(s) 120, 1139
AsuHPI GGTGA 6 cut(s) 83, 161, 185, 389, 805, 830
AvaII GGWCC 3 cut(s) 769, 952, 1135
BanI GGYRCC 1 cut(s) 727
Bbv12I GWGCWC 1 cut(s) 937
BbvI GCAGC 1 cut(s) 375
BccI CCATC 2 cut(s) 340, 818
BceAI ACGGC 2 cut(s) 542, 647
BciT130I CCWGG 2 cut(s) 470, 705
BclI TGATCA 1 cut(s) 48
BcnI CCSGG 2 cut(s) 120, 1139
BcoDI GTCTC 1 cut(s) 716
BcuI ACTAGT 2 cut(s) 110, 137
BfaI CTAG 4 cut(s) 111, 138, 204, 659
BfoI RGCGCY 1 cut(s) 330
BglII AGATCT 1 cut(s) 82
BisI GCNGC 4 cut(s) 224, 389, 474, 477
BlsI GCNGC 4 cut(s) 225, 390, 475, 478
BmcAI AGTACT 2 cut(s) 960, 977
Bme1390I CCNGG 4 cut(s) 120, 470, 705, 1139
Bme18I GGWCC 3 cut(s) 769, 952, 1135
BmgBI CACGTC 1 cut(s) 362
BmgT120I GGNCC 6 cut(s) 647, 747, 769, 952, 1135, 1190
BmiI GGNNCC 7 cut(s) 648, 702, 729, 735, 953, 954, 1129
BmrFI CCNGG 4 cut(s) 120, 470, 705, 1139
BmrI ACTGGG 2 cut(s) 950, 1197
BmsI GCATC 5 cut(s) 555, 609, 827, 912, 1050
BmuI ACTGGG 2 cut(s) 950, 1197
BpmI CTGGAG 3 cut(s) 687, 890, 1146
BpuEI CTTGAG 1 cut(s) 808
BpuMI CCSGG 2 cut(s) 120, 1139
BsaBI GATNNNNATC 1 cut(s) 87
BsaJI CCNNGG 6 cut(s) 118, 509, 709, 743, 765, 1131
BsaWI WCCGGW 4 cut(s) 146, 523, 815, 937
BsaXI ACNNNNNCTCC 2 cut(s) 685, 715
Bsc4I CCNNNNNNNGG 6 cut(s) 422, 443, 644, 710, 937, 1137
Bse118I RCCGGY 4 cut(s) 523, 730, 815, 1003
Bse1I ACTGG 5 cut(s) 464, 671, 956, 1129, 1192
Bse8I GATNNNNATC 1 cut(s) 87
BseBI CCWGG 2 cut(s) 470, 705
BseDI CCNNGG 6 cut(s) 118, 509, 709, 743, 765, 1131
BseGI GGATG 2 cut(s) 921, 927
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 6 cut(s) 422, 443, 644, 710, 937, 1137
BseMII CTCAG 1 cut(s) 710
BseNI ACTGG 5 cut(s) 464, 671, 956, 1129, 1192
BsePI GCGCGC 2 cut(s) 678, 680
BseRI GAGGAG 4 cut(s) 167, 170, 173, 176
BseX3I CGGCCG 1 cut(s) 474
BseXI GCAGC 1 cut(s) 375
BsgI GTGCAG 1 cut(s) 581
Bsh1236I CGCG 3 cut(s) 678, 680, 682
Bsh1285I CGRYCG 1 cut(s) 477
BshNI GGYRCC 1 cut(s) 727
BshTI ACCGGT 2 cut(s) 523, 815
BsiEI CGRYCG 1 cut(s) 477
BsiHKAI GWGCWC 1 cut(s) 937
BslFI GGGAC 3 cut(s) 907, 965, 1068
BslI CCNNNNNNNGG 6 cut(s) 422, 443, 644, 710, 937, 1137
BsmAI GTCTC 1 cut(s) 716
BsmBI CGTCTC 1 cut(s) 716
BsmFI GGGAC 3 cut(s) 907, 965, 1068
Bsp1286I GDGCHC 1 cut(s) 937
Bsp143I GATC 4 cut(s) 48, 82, 1029, 1180
BspACI CCGC 7 cut(s) 181, 196, 224, 473, 477, 488, 676
BspCNI CTCAG 1 cut(s) 709
BspFNI CGCG 3 cut(s) 678, 680, 682
BspLI GGNNCC 7 cut(s) 648, 702, 729, 735, 953, 954, 1129
BspPI GGATC 1 cut(s) 1175
BspT107I GGYRCC 1 cut(s) 727
BsrFI RCCGGY 4 cut(s) 523, 730, 815, 1003
BsrI ACTGG 5 cut(s) 464, 671, 956, 1129, 1192
BssAI RCCGGY 4 cut(s) 523, 730, 815, 1003
BssECI CCNNGG 6 cut(s) 118, 509, 709, 743, 765, 1131
BssHII GCGCGC 2 cut(s) 678, 680
BssMI GATC 4 cut(s) 48, 82, 1029, 1180
BssT1I CCWWGG 3 cut(s) 709, 743, 1131
Bst2UI CCWGG 2 cut(s) 470, 705
Bst4CI ACNGT 7 cut(s) 71, 513, 727, 769, 828, 995, 1086
BstAPI GCANNNNNTGC 2 cut(s) 837, 978
BstC8I GCNNGC 8 cut(s) 393, 680, 682, 732, 762, 833, 970, 983
BstDEI CTNAG 2 cut(s) 696, 1009
BstDSI CCRYGG 2 cut(s) 509, 765
BstF5I GGATG 2 cut(s) 921, 927
BstFNI CGCG 3 cut(s) 678, 680, 682
BstH2I RGCGCY 1 cut(s) 330
BstHHI GCGC 5 cut(s) 329, 397, 680, 682, 684
BstKTI GATC 4 cut(s) 51, 85, 1032, 1183
BstMAI GTCTC 1 cut(s) 716
BstMBI GATC 4 cut(s) 48, 82, 1029, 1180
BstMCI CGRYCG 1 cut(s) 477
BstMWI GCNNNNNNNGC 5 cut(s) 326, 394, 432, 837, 978
BstNI CCWGG 2 cut(s) 470, 705
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 4 cut(s) 118, 468, 703, 1137
BstUI CGCG 3 cut(s) 678, 680, 682
BstV1I GCAGC 1 cut(s) 375
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BstZI CGGCCG 1 cut(s) 474
BtgI CCRYGG 2 cut(s) 509, 765
BtgZI GCGATG 1 cut(s) 850
BtrI CACGTC 1 cut(s) 362
BtsCI GGATG 2 cut(s) 921, 927
BtsIMutI CAGTG 3 cut(s) 833, 1000, 1185
Cac8I GCNNGC 8 cut(s) 393, 680, 682, 732, 762, 833, 970, 983
CciNI GCGGCCGC 1 cut(s) 474
CfoI GCGC 5 cut(s) 329, 397, 680, 682, 684
Cfr10I RCCGGY 4 cut(s) 523, 730, 815, 1003
Cfr13I GGNCC 6 cut(s) 647, 747, 769, 952, 1135, 1190
Csp6I GTAC 6 cut(s) 248, 824, 850, 862, 959, 976
CspAI ACCGGT 2 cut(s) 523, 815
CviAII CATG 3 cut(s) 169, 613, 926
CviQI GTAC 6 cut(s) 248, 824, 850, 862, 959, 976
DdeI CTNAG 2 cut(s) 696, 1009
DpnI GATC 4 cut(s) 50, 84, 1031, 1182
DpnII GATC 4 cut(s) 48, 82, 1029, 1180
EaeI YGGCCR 3 cut(s) 474, 632, 668
EagI CGGCCG 1 cut(s) 474
EciI GGCGGA 1 cut(s) 170
EclXI CGGCCG 1 cut(s) 474
Eco130I CCWWGG 3 cut(s) 709, 743, 1131
Eco147I AGGCCT 1 cut(s) 208
Eco47I GGWCC 3 cut(s) 769, 952, 1135
Eco47III AGCGCT 1 cut(s) 328
Eco52I CGGCCG 1 cut(s) 474
EcoO109I RGGNCCY 1 cut(s) 952
EcoRII CCWGG 2 cut(s) 468, 703
EcoT14I CCWWGG 3 cut(s) 709, 743, 1131
EcoT22I ATGCAT 1 cut(s) 927
ErhI CCWWGG 3 cut(s) 709, 743, 1131
Esp3I CGTCTC 1 cut(s) 716
FaeI CATG 3 cut(s) 172, 616, 929
FaiI YATR 8 cut(s) 57, 170, 614, 798, 803, 884, 927, 944
FaqI GGGAC 3 cut(s) 907, 965, 1068
FatI CATG 3 cut(s) 168, 612, 925
FbaI TGATCA 1 cut(s) 48
Fnu4HI GCNGC 4 cut(s) 224, 389, 474, 477
FokI GGATG 2 cut(s) 928, 934
Fsp4HI GCNGC 4 cut(s) 224, 389, 474, 477
FspBI CTAG 4 cut(s) 111, 138, 204, 659
GlaI GCGC 5 cut(s) 328, 396, 679, 681, 683
GluI GCNGC 4 cut(s) 224, 389, 474, 477
GsuI CTGGAG 3 cut(s) 687, 890, 1146
HaeII RGCGCY 1 cut(s) 330
HhaI GCGC 5 cut(s) 329, 397, 680, 682, 684
Hin1II CATG 3 cut(s) 172, 616, 929
Hin6I GCGC 5 cut(s) 327, 395, 678, 680, 682
HinP1I GCGC 5 cut(s) 327, 395, 678, 680, 682
HinfI GANTC 4 cut(s) 34, 664, 694, 1114
HphI GGTGA 6 cut(s) 83, 161, 185, 389, 805, 830
Hpy166II GTNNAC 2 cut(s) 380, 772
Hpy188III TCNNGA 4 cut(s) 74, 539, 593, 869
Hpy8I GTNNAC 2 cut(s) 380, 772
HpyCH4III ACNGT 7 cut(s) 71, 513, 727, 769, 828, 995, 1086
HpyCH4IV ACGT 2 cut(s) 361, 822
HpyCH4V TGCA 8 cut(s) 40, 562, 616, 831, 925, 972, 1074, 1170
HpyF10VI GCNNNNNNNGC 5 cut(s) 326, 394, 432, 837, 978
HpyF3I CTNAG 2 cut(s) 696, 1009
HpySE526I ACGT 2 cut(s) 361, 822
Hsp92II CATG 3 cut(s) 172, 616, 929
HspAI GCGC 5 cut(s) 327, 395, 678, 680, 682
KflI GGGWCCC 1 cut(s) 952
KroI GCCGGC 1 cut(s) 730
KroNI GCCGGC 1 cut(s) 732
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 4 cut(s) 48, 82, 1029, 1180
LmnI GCTCC 5 cut(s) 334, 706, 739, 871, 1127
Lsp1109I GCAGC 1 cut(s) 375
LweI GCATC 5 cut(s) 555, 609, 827, 912, 1050
MaeI CTAG 4 cut(s) 111, 138, 204, 659
MaeII ACGT 2 cut(s) 361, 822
MaeIII GTNAC 4 cut(s) 97, 513, 805, 818
MalI GATC 4 cut(s) 50, 84, 1031, 1182
MauBI CGCGCGCG 1 cut(s) 678
MboI GATC 4 cut(s) 48, 82, 1029, 1180
MboII GAAGA 4 cut(s) 26, 29, 335, 524
MfeI CAATTG 1 cut(s) 1033
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 937
MluCI AATT 4 cut(s) 187, 781, 878, 1033
MlyI GAGTC 1 cut(s) 688
MmeI TCCRAC 1 cut(s) 297
Mph1103I ATGCAT 1 cut(s) 927
MroNI GCCGGC 1 cut(s) 730
MroXI GAANNNNTTC 1 cut(s) 1094
MslI CAYNNNNRTG 3 cut(s) 540, 594, 617
MspR9I CCNGG 4 cut(s) 120, 470, 705, 1139
MunI CAATTG 1 cut(s) 1033
MvaI CCWGG 2 cut(s) 470, 705
MvnI CGCG 3 cut(s) 678, 680, 682
MwoI GCNNNNNNNGC 5 cut(s) 326, 394, 432, 837, 978
NaeI GCCGGC 1 cut(s) 732
NciI CCSGG 2 cut(s) 120, 1139
NdeII GATC 4 cut(s) 48, 82, 1029, 1180
NgoMIV GCCGGC 1 cut(s) 730
NlaIII CATG 3 cut(s) 172, 616, 929
NlaIV GGNNCC 7 cut(s) 648, 702, 729, 735, 953, 954, 1129
NmuCI GTSAC 4 cut(s) 97, 513, 805, 818
NotI GCGGCCGC 1 cut(s) 474
NsiI ATGCAT 1 cut(s) 927
NspI RCATGY 1 cut(s) 172
PauI GCGCGC 2 cut(s) 678, 680
PceI AGGCCT 1 cut(s) 208
PdiI GCCGGC 1 cut(s) 732
PdmI GAANNNNTTC 1 cut(s) 1094
PfeI GAWTC 3 cut(s) 34, 664, 1114
PinAI ACCGGT 2 cut(s) 523, 815
PkrI GCNGC 4 cut(s) 225, 390, 475, 478
PleI GAGTC 1 cut(s) 688
PpsI GAGTC 1 cut(s) 688
PpuMI RGGWCCY 1 cut(s) 952
Psp5II RGGWCCY 1 cut(s) 952
Psp6I CCWGG 2 cut(s) 468, 703
PspGI CCWGG 2 cut(s) 468, 703
PspN4I GGNNCC 7 cut(s) 648, 702, 729, 735, 953, 954, 1129
PspPI GGNCC 6 cut(s) 647, 747, 769, 952, 1135, 1190
PspPPI RGGWCCY 1 cut(s) 952
PsuI RGATCY 1 cut(s) 82
PteI GCGCGC 2 cut(s) 678, 680
RsaI GTAC 6 cut(s) 249, 825, 851, 863, 960, 977
RsaNI GTAC 6 cut(s) 248, 824, 850, 862, 959, 976
RseI CAYNNNNRTG 3 cut(s) 540, 594, 617
SatI GCNGC 4 cut(s) 224, 389, 474, 477
Sau3AI GATC 4 cut(s) 48, 82, 1029, 1180
Sau96I GGNCC 6 cut(s) 647, 747, 769, 952, 1135, 1190
ScaI AGTACT 2 cut(s) 960, 977
SchI GAGTC 1 cut(s) 688
ScrFI CCNGG 4 cut(s) 120, 470, 705, 1139
SduI GDGCHC 1 cut(s) 937
SfaNI GCATC 5 cut(s) 555, 609, 827, 912, 1050
SgrAI CRCCGGYG 2 cut(s) 523, 815
SinI GGWCC 3 cut(s) 769, 952, 1135
SmiMI CAYNNNNRTG 3 cut(s) 540, 594, 617
SmlI CTYRAG 1 cut(s) 787
SmoI CTYRAG 1 cut(s) 787
SpeI ACTAGT 2 cut(s) 110, 137
Sse9I AATT 4 cut(s) 187, 781, 878, 1033
SseBI AGGCCT 1 cut(s) 208
SsiI CCGC 7 cut(s) 181, 196, 224, 473, 477, 488, 676
SspI AATATT 1 cut(s) 1094
SspMI CTAG 4 cut(s) 111, 138, 204, 659
StuI AGGCCT 1 cut(s) 208
StyD4I CCNGG 4 cut(s) 118, 468, 703, 1137
StyI CCWWGG 3 cut(s) 709, 743, 1131
TaaI ACNGT 7 cut(s) 71, 513, 727, 769, 828, 995, 1086
TaiI ACGT 2 cut(s) 364, 825
TaqI TCGA 4 cut(s) 455, 692, 1080, 1120
TaqII GACCGA 1 cut(s) 945
TasI AATT 4 cut(s) 187, 781, 878, 1033
TatI WGTACW 4 cut(s) 247, 861, 958, 975
TauI GCSGC 3 cut(s) 226, 476, 479
TfiI GAWTC 3 cut(s) 34, 664, 1114
TscAI CASTG 3 cut(s) 833, 1000, 1192
TseFI GTSAC 4 cut(s) 97, 513, 805, 818
TseI GCWGC 1 cut(s) 388
Tsp45I GTSAC 4 cut(s) 97, 513, 805, 818
TspDTI ATGAA 3 cut(s) 251, 524, 578
TspGWI ACGGA 1 cut(s) 726
TspRI CASTG 3 cut(s) 833, 1000, 1192
VpaK11BI GGWCC 3 cut(s) 769, 952, 1135
XapI RAATTY 1 cut(s) 878
XceI RCATGY 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 1094
XspI CTAG 4 cut(s) 111, 138, 204, 659
ZrmI AGTACT 2 cut(s) 960, 977
Zsp2I ATGCAT 1 cut(s) 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.