Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004320

Physical Location & Seq

Genomic Coordinates Forward (+)

6971573 .. 6972346

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0089500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGAGCCTGGCTATGTGGCTCACCCAGGTCAACTCGAAGCCGCCCCACCACCACTGGAGGTAGACGGCCCAATTCCAGGCAACAACAACAAACACATCACTAAGCTGTGCACCTCCGTCTTCCGGAAACTCTTGCTCCTATGCTACATCGTTTGGTCGGTGCGTTTTCTAGTCATGCAACCAAAAACCCCCAAGTTCAAGGTCGAATCTGGCACCGTTCAGCTCAATCCAGAAGGCTCTCAGTTAACCGCCCAGTGGGATATCACACTCCTTGCCACCAACCCCAACCACAACTTCAAAATCTACTACAAACACATCCAGGCCGGGATCCTCTACCAGACCGGTGACCTCCTTTACACGCTCGTAAAAACGCCATGGCCTTCCTTTGTTTCGAATAAGAGGAACCAGACTCGTGTGGAGTTCAAATTCAGTGTGTGGAAGGAACAGCTTAGCTACGAAGTGGTAGAGGAAATCTCCTCTCATGAAGTAGGGCTATCCGCAGTCAGATTCATCTCTTCGGTGTGGTTTATGTCTAAACTACTGCCTCCGGAACATGCTGAGCTGATGGTCACCTGTAAGGTCCCGAATAATGGCACCGTCACCTTAACGAGTCAGTACTCAGGGAAGTGCGTTGTTGAGTACTATAAAACTTATATCTTGGAATGCTTGGTTATTAGTTCTTTCATCGTCTTAGCTATTTGGGCCTGCATTTGGTGCATTTGCGTTTGTGATTCAAAGCCACGCAACACATCAGCACGCATTGCACCTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

29.08

Weight (kDa)

8.66

Isoelectric Point (pI)

31.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49330 AT2G16190 AT2G16190
fragaria_vesca	FvH4_1g24220 FvH4_2g08460
malus_domestica	MD04G1118400.v1.1 MD10G1078300.v1.1
prunus_persica	Prupe.6G247500_v2.0.a1 Prupe.6G247600_v2.0.a1 Prupe.6G247700_v2.0.a1 Prupe.8G100200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0467741 RchiOBHm_Chr6g0263791
rosa_laevigata	RLG00000014312 RLG00000024477
rosa_multiflora	Rmu_sc0001793.1_g000022 Rmu_sc0009383.1_g000005
rosa_roxburghii	Rroxscaffold_6G00413460 Rroxscaffold_7G00203930
rosa_rugosa	Rorug03G0089400 Rorug03G0089500 Rorug06G0006200
rosa_samantha	Rh3AG137900 Rh3BG159200 Rh3CG159100 Rh3DG159600 Rh6AG125600 Rh6BG122100 Rh6CG120400 Rh6DG108200
rosa_wichuraiana	Rw3G013060 Rw6G010930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	212, 593
AccI	GTMKAC	1 cut(s)	63
AccIII	TCCGGA	2 cut(s)	123, 547
AciI	CCGC	3 cut(s)	42, 249, 498
AclWI	GGATC	2 cut(s)	322, 335
AcsI	RAATTY	1 cut(s)	425
AfaI	GTAC	2 cut(s)	617, 641
AfiI	CCNNNNNNNGG	5 cut(s)	77, 123, 255, 590, 711
AgeI	ACCGGT	1 cut(s)	341
AgsI	TTSAA	4 cut(s)	199, 298, 424, 735
AjnI	CCWGG	4 cut(s)	7, 25, 76, 318
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	7 cut(s)	106, 223, 448, 453, 562, 695, 771
AluI	AGCT	7 cut(s)	106, 223, 448, 453, 562, 695, 771
Alw21I	GWGCWC	1 cut(s)	113
Alw44I	GTGCAC	1 cut(s)	109
AlwI	GGATC	2 cut(s)	322, 335
Aor13HI	TCCGGA	2 cut(s)	123, 547
AoxI	GGCC	4 cut(s)	67, 321, 377, 702
ApaLI	GTGCAC	1 cut(s)	109
ApoI	RAATTY	1 cut(s)	425
AsiGI	ACCGGT	1 cut(s)	341
AspS9I	GGNCC	3 cut(s)	68, 580, 702
AsuC2I	CCSGG	1 cut(s)	325
AsuHPI	GGTGA	4 cut(s)	14, 356, 562, 592
AsuII	TTCGAA	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	580
BaeGI	GKGCMC	1 cut(s)	113
BamHI	GGATCC	1 cut(s)	327
BanI	GGYRCC	2 cut(s)	212, 593
BauI	CACGAG	1 cut(s)	411
BbsI	GAAGAC	1 cut(s)	112
Bbv12I	GWGCWC	1 cut(s)	113
BccI	CCATC	1 cut(s)	559
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	4 cut(s)	9, 27, 78, 320
BcnI	CCSGG	1 cut(s)	325
BfaI	CTAG	2 cut(s)	170, 768
BisI	GCNGC	1 cut(s)	42
BlpI	GCTNAGC	2 cut(s)	449, 558
BlsI	GCNGC	1 cut(s)	43
BmcAI	AGTACT	2 cut(s)	617, 641
Bme1390I	CCNGG	5 cut(s)	9, 27, 78, 320, 325
Bme18I	GGWCC	1 cut(s)	580
BmgT120I	GGNCC	3 cut(s)	68, 580, 702
BmiI	GGNNCC	6 cut(s)	6, 214, 329, 404, 582, 595
BmrFI	CCNGG	5 cut(s)	9, 27, 78, 320, 325
BmrI	ACTGGG	1 cut(s)	247
BmuI	ACTGGG	1 cut(s)	247
BpiI	GAAGAC	1 cut(s)	112
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
BpmI	CTGGAG	1 cut(s)	77
Bpu1102I	GCTNAGC	2 cut(s)	449, 558
Bpu14I	TTCGAA	1 cut(s)	392
BpuMI	CCSGG	1 cut(s)	325
BsaJI	CCNNGG	2 cut(s)	25, 374
BsaWI	WCCGGW	3 cut(s)	123, 341, 547
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	5 cut(s)	77, 123, 255, 590, 711
Bse118I	RCCGGY	1 cut(s)	341
Bse1I	ACTGG	2 cut(s)	60, 253
Bse3DI	GCAATG	1 cut(s)	759
BseAI	TCCGGA	2 cut(s)	123, 547
BseBI	CCWGG	4 cut(s)	9, 27, 78, 320
BseDI	CCNNGG	2 cut(s)	25, 374
BseGI	GGATG	1 cut(s)	315
BseLI	CCNNNNNNNGG	5 cut(s)	77, 123, 255, 590, 711
BseMI	GCAATG	1 cut(s)	759
BseMII	CTCAG	3 cut(s)	254, 549, 633
BseNI	ACTGG	2 cut(s)	60, 253
BseRI	GAGGAG	1 cut(s)	466
BseSI	GKGCMC	1 cut(s)	113
BshFI	GGCC	4 cut(s)	69, 323, 379, 704
BshNI	GGYRCC	2 cut(s)	212, 593
BshTI	ACCGGT	1 cut(s)	341
BsiHKAI	GWGCWC	1 cut(s)	113
BsiSI	CCGG	4 cut(s)	124, 324, 342, 548
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	5 cut(s)	77, 123, 255, 590, 711
BsmFI	GGGAC	1 cut(s)	566
BsmI	GAATGC	1 cut(s)	668
BsnI	GGCC	4 cut(s)	69, 323, 379, 704
Bsp119I	TTCGAA	1 cut(s)	392
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp13I	TCCGGA	2 cut(s)	123, 547
Bsp143I	GATC	1 cut(s)	327
Bsp1720I	GCTNAGC	2 cut(s)	449, 558
Bsp19I	CCATGG	1 cut(s)	374
BspACI	CCGC	3 cut(s)	42, 249, 498
BspANI	GGCC	4 cut(s)	69, 323, 379, 704
BspCNI	CTCAG	3 cut(s)	253, 550, 632
BspEI	TCCGGA	2 cut(s)	123, 547
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	6 cut(s)	6, 214, 329, 404, 582, 595
BspPI	GGATC	2 cut(s)	322, 335
BspT104I	TTCGAA	1 cut(s)	392
BspT107I	GGYRCC	2 cut(s)	212, 593
BsrDI	GCAATG	1 cut(s)	759
BsrFI	RCCGGY	1 cut(s)	341
BsrI	ACTGG	2 cut(s)	60, 253
BssAI	RCCGGY	1 cut(s)	341
BssECI	CCNNGG	2 cut(s)	25, 374
BssMI	GATC	1 cut(s)	327
BssSI	CACGAG	1 cut(s)	411
BssT1I	CCWWGG	1 cut(s)	374
Bst2BI	CACGAG	1 cut(s)	411
Bst2UI	CCWGG	4 cut(s)	9, 27, 78, 320
Bst4CI	ACNGT	2 cut(s)	217, 598
Bst6I	CTCTTC	1 cut(s)	520
BstAPI	GCANNNNNTGC	2 cut(s)	714, 761
BstBI	TTCGAA	1 cut(s)	392
BstC8I	GCNNGC	2 cut(s)	706, 757
BstDEI	CTNAG	6 cut(s)	102, 240, 449, 558, 619, 691
BstDSI	CCRYGG	1 cut(s)	374
BstEII	GGTNACC	2 cut(s)	344, 568
BstF5I	GGATG	1 cut(s)	315
BstKTI	GATC	1 cut(s)	330
BstMBI	GATC	1 cut(s)	327
BstMWI	GCNNNNNNNGC	3 cut(s)	701, 714, 761
BstNI	CCWGG	4 cut(s)	9, 27, 78, 320
BstNSI	RCATGY	1 cut(s)	557
BstPI	GGTNACC	2 cut(s)	344, 568
BstSCI	CCNGG	5 cut(s)	7, 25, 76, 318, 323
BstSLI	GKGCMC	1 cut(s)	113
BstV2I	GAAGAC	1 cut(s)	112
BstX2I	RGATCY	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	327
BsuRI	GGCC	4 cut(s)	69, 323, 379, 704
BtgI	CCRYGG	1 cut(s)	374
BtsCI	GGATG	1 cut(s)	315
BtsIMutI	CAGTG	3 cut(s)	53, 260, 436
Cac8I	GCNNGC	2 cut(s)	706, 757
CciI	TCATGA	1 cut(s)	481
Cfr10I	RCCGGY	1 cut(s)	341
Cfr13I	GGNCC	3 cut(s)	68, 580, 702
Csp6I	GTAC	2 cut(s)	616, 640
CspAI	ACCGGT	1 cut(s)	341
CviAII	CATG	4 cut(s)	175, 375, 482, 554
CviQI	GTAC	2 cut(s)	616, 640
DdeI	CTNAG	6 cut(s)	102, 240, 449, 558, 619, 691
DpnI	GATC	1 cut(s)	329
DpnII	GATC	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	520
EarI	CTCTTC	1 cut(s)	520
Eco130I	CCWWGG	1 cut(s)	374
Eco32I	GATATC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	580
Eco91I	GGTNACC	2 cut(s)	344, 568
EcoO109I	RGGNCCY	1 cut(s)	580
EcoO65I	GGTNACC	2 cut(s)	344, 568
EcoRII	CCWGG	4 cut(s)	7, 25, 76, 318
EcoRV	GATATC	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	374
ErhI	CCWWGG	1 cut(s)	374
FaeI	CATG	4 cut(s)	178, 378, 485, 557
FaiI	YATR	9 cut(s)	15, 142, 176, 376, 483, 530, 555, 645, 654
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	4 cut(s)	174, 374, 481, 553
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	2 cut(s)	170, 768
GluI	GCNGC	1 cut(s)	42
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	4 cut(s)	69, 323, 379, 704
HapII	CCGG	4 cut(s)	124, 324, 342, 548
Hin1II	CATG	4 cut(s)	178, 378, 485, 557
HincII	GTYRAC	2 cut(s)	32, 246
HindII	GTYRAC	2 cut(s)	32, 246
HinfI	GANTC	5 cut(s)	206, 409, 507, 610, 731
HpaI	GTTAAC	1 cut(s)	246
HpaII	CCGG	4 cut(s)	124, 324, 342, 548
HphI	GGTGA	4 cut(s)	14, 356, 562, 592
Hpy166II	GTNNAC	4 cut(s)	32, 64, 111, 246
Hpy188I	TCNGA	1 cut(s)	506
Hpy188III	TCNNGA	5 cut(s)	124, 230, 482, 548, 583
Hpy8I	GTNNAC	4 cut(s)	32, 64, 111, 246
HpyAV	CCTTC	3 cut(s)	227, 390, 433
HpyCH4III	ACNGT	2 cut(s)	217, 598
HpyCH4V	TGCA	5 cut(s)	111, 178, 708, 717, 764
HpyF10VI	GCNNNNNNNGC	3 cut(s)	701, 714, 761
HpyF3I	CTNAG	6 cut(s)	102, 240, 449, 558, 619, 691
Hsp92II	CATG	4 cut(s)	178, 378, 485, 557
Kpn2I	TCCGGA	2 cut(s)	123, 547
KspAI	GTTAAC	1 cut(s)	246
Kzo9I	GATC	1 cut(s)	327
LmnI	GCTCC	2 cut(s)	4, 141
MaeI	CTAG	2 cut(s)	170, 768
MaeIII	GTNAC	3 cut(s)	344, 568, 598
MalI	GATC	1 cut(s)	329
MboI	GATC	1 cut(s)	327
MboII	GAAGA	2 cut(s)	112, 507
MflI	RGATCY	1 cut(s)	327
MhlI	GDGCHC	1 cut(s)	113
MluCI	AATT	2 cut(s)	72, 425
MlyI	GAGTC	2 cut(s)	403, 619
MnlI	CCTC	8 cut(s)	52, 124, 341, 359, 393, 460, 487, 555
MroI	TCCGGA	2 cut(s)	123, 547
MseI	TTAA	2 cut(s)	245, 605
MspI	CCGG	4 cut(s)	124, 324, 342, 548
MspR9I	CCNGG	5 cut(s)	9, 27, 78, 320, 325
Mva1269I	GAATGC	1 cut(s)	668
MvaI	CCWGG	4 cut(s)	9, 27, 78, 320
MwoI	GCNNNNNNNGC	3 cut(s)	701, 714, 761
NciI	CCSGG	1 cut(s)	325
NcoI	CCATGG	1 cut(s)	374
NdeII	GATC	1 cut(s)	327
NlaIII	CATG	4 cut(s)	178, 378, 485, 557
NlaIV	GGNNCC	6 cut(s)	6, 214, 329, 404, 582, 595
NmuCI	GTSAC	3 cut(s)	344, 568, 598
NspI	RCATGY	1 cut(s)	557
NspV	TTCGAA	1 cut(s)	392
PagI	TCATGA	1 cut(s)	481
PctI	GAATGC	1 cut(s)	668
PfeI	GAWTC	3 cut(s)	206, 507, 731
PinAI	ACCGGT	1 cut(s)	341
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	2 cut(s)	403, 618
PpsI	GAGTC	2 cut(s)	403, 618
PpuMI	RGGWCCY	1 cut(s)	580
Psp5II	RGGWCCY	1 cut(s)	580
Psp6I	CCWGG	4 cut(s)	7, 25, 76, 318
PspEI	GGTNACC	2 cut(s)	344, 568
PspGI	CCWGG	4 cut(s)	7, 25, 76, 318
PspN4I	GGNNCC	6 cut(s)	6, 214, 329, 404, 582, 595
PspPI	GGNCC	3 cut(s)	68, 580, 702
PspPPI	RGGWCCY	1 cut(s)	580
PsuI	RGATCY	1 cut(s)	327
RsaI	GTAC	2 cut(s)	617, 641
RsaNI	GTAC	2 cut(s)	616, 640
SaqAI	TTAA	2 cut(s)	245, 605
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	327
Sau96I	GGNCC	3 cut(s)	68, 580, 702
ScaI	AGTACT	2 cut(s)	617, 641
SchI	GAGTC	2 cut(s)	403, 619
ScrFI	CCNGG	5 cut(s)	9, 27, 78, 320, 325
SduI	GDGCHC	1 cut(s)	113
SfuI	TTCGAA	1 cut(s)	392
SinI	GGWCC	1 cut(s)	580
Sse9I	AATT	2 cut(s)	72, 425
SsiI	CCGC	3 cut(s)	42, 249, 498
SspMI	CTAG	2 cut(s)	170, 768
StyD4I	CCNGG	5 cut(s)	7, 25, 76, 318, 323
StyI	CCWWGG	1 cut(s)	374
TaaI	ACNGT	2 cut(s)	217, 598
TaqI	TCGA	3 cut(s)	36, 204, 392
TasI	AATT	2 cut(s)	72, 425
TatI	WGTACW	2 cut(s)	615, 639
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	3 cut(s)	206, 507, 731
Tru1I	TTAA	2 cut(s)	245, 605
Tru9I	TTAA	2 cut(s)	245, 605
TscAI	CASTG	3 cut(s)	60, 260, 436
TseFI	GTSAC	3 cut(s)	344, 568, 598
Tsp45I	GTSAC	3 cut(s)	344, 568, 598
TspDTI	ATGAA	3 cut(s)	498, 499, 673
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	3 cut(s)	60, 260, 436
VneI	GTGCAC	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	580
XapI	RAATTY	1 cut(s)	425
XceI	RCATGY	1 cut(s)	557
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	2 cut(s)	170, 768
ZrmI	AGTACT	2 cut(s)	617, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.