Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009383.1

Orthogroup ID

OG0004320

Physical Location & Seq

Genomic Coordinates Forward (+)

24203 .. 25417

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009383.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atggacaacgaggaagaagaaaggcagaacaagaatctgcaagagatgatcaatcataaacgaaagaacagtcaagaacaagatctcaatcaccaagtcacatcatctactagtttccccggtgtcacatcatcaactagtttctccggtgaggaggaggaggaggaggaggaggacatgctggaactccgcctcaattctcaccgcccctctaggcctcgcccaagtgtgccgcaaccacagacccaaatccctgtactgccagagcttcatcaactctccaacacacactctcgcccaaatctactgccaacaccacaaccagaggctcaaagcgctccatcaaatcatcttcaactctcaaacacacatcctctttacagaggtgaacccttgctgcttgcgccagagcctctcctttatcccctcaatggcttttatcgccctaatggtggtcagtcctcgattacaccagtccaggcggccgcacctccaccgccacctccacctccacctccacggtcacaaccaccggtggttcttcatcaagatgtgagaccaagagccgtgcagatgccacaaccacaggtggtttttcatcaagatgtgaggccaagagccatgcagatgccacctctacggccaccacctgtggggccaagaccactagggattcggccagtccgctcgcgccggaactcgactcaggctccaggccaaggaaagagcgagacggtgccggctccgtttccttgggccaccacaaagcgagccacggtccacaacctgaattacttgaggacacataatatagtgaccatcaccggtgacgtacagtgcaagcgatgcgagaagcagtacgagattgagtacaatctggagcagaaatttatggaggtggggacttacattgttgagaacaggatgaggatgcatgaccgagcaccggatatgtggagggacccagtacttccggcttgcaagtactgcgagcaagagaacagtgcgaggccggtcttggctgacaaaaagagggcgatcaattggttgtttctgtttttgggacagatgcttgggtgttgcacactcgaacagttgaaatatttctgtaagcacacaaagaatcatcgaactggagccaaggaccgggttctttatctaacttatctgtgtttgtgcaaacagcttgatcccactgggccttttgatgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

404

Amino Acids

46.08

Weight (kDa)

8.66

Isoelectric Point (pI)

75.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49330 AT2G16190 AT2G16190
fragaria_vesca	FvH4_1g24220 FvH4_2g08460
malus_domestica	MD04G1118400.v1.1 MD10G1078300.v1.1
prunus_persica	Prupe.6G247500_v2.0.a1 Prupe.6G247600_v2.0.a1 Prupe.6G247700_v2.0.a1 Prupe.8G100200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0467741 RchiOBHm_Chr6g0263791
rosa_laevigata	RLG00000014312 RLG00000024477
rosa_multiflora	Rmu_sc0001793.1_g000022 Rmu_sc0009383.1_g000005
rosa_roxburghii	Rroxscaffold_6G00413460 Rroxscaffold_7G00203930
rosa_rugosa	Rorug03G0089400 Rorug03G0089500 Rorug06G0006200
rosa_samantha	Rh3AG137900 Rh3BG159200 Rh3CG159100 Rh3DG159600 Rh6AG125600 Rh6BG122100 Rh6CG120400 Rh6DG108200
rosa_wichuraiana	Rw3G013060 Rw6G010930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	736
AccBSI	CCGCTC	1 cut(s)	687
AccII	CGCG	1 cut(s)	691
AciI	CCGC	7 cut(s)	190, 205, 233, 482, 486, 497, 685
AclWI	GGATC	1 cut(s)	1184
AcoI	YGGCCR	3 cut(s)	483, 641, 677
AcsI	RAATTY	1 cut(s)	887
AfaI	GTAC	6 cut(s)	258, 834, 860, 872, 969, 986
AfeI	AGCGCT	1 cut(s)	337
AfiI	CCNNNNNNNGG	6 cut(s)	431, 452, 653, 719, 946, 1146
AgeI	ACCGGT	2 cut(s)	532, 824
AgsI	TTSAA	2 cut(s)	356, 1099
AhlI	ACTAGT	2 cut(s)	110, 137
AjnI	CCWGG	2 cut(s)	477, 712
AluBI	AGCT	2 cut(s)	268, 1186
AluI	AGCT	2 cut(s)	268, 1186
Alw21I	GWGCWC	1 cut(s)	946
Alw26I	GTCTC	2 cut(s)	550, 725
AlwI	GGATC	1 cut(s)	1184
Aor51HI	AGCGCT	1 cut(s)	337
ApeKI	GCWGC	1 cut(s)	397
ApoI	RAATTY	1 cut(s)	887
ArsI	GACNNNNNNTTYG	2 cut(s)	55, 87
AsiGI	ACCGGT	2 cut(s)	532, 824
Asp700I	GAANNNNTTC	1 cut(s)	1103
AspLEI	GCGC	3 cut(s)	338, 406, 693
AspS9I	GGNCC	6 cut(s)	656, 756, 778, 961, 1144, 1199
AsuC2I	CCSGG	2 cut(s)	120, 1148
AsuHPI	GGTGA	6 cut(s)	83, 161, 194, 398, 814, 839
AvaII	GGWCC	3 cut(s)	778, 961, 1144
BanI	GGYRCC	1 cut(s)	736
Bbv12I	GWGCWC	1 cut(s)	946
BbvI	GCAGC	1 cut(s)	384
BccI	CCATC	2 cut(s)	349, 827
BceAI	ACGGC	2 cut(s)	551, 656
BciT130I	CCWGG	2 cut(s)	479, 714
BclI	TGATCA	1 cut(s)	48
BcnI	CCSGG	2 cut(s)	120, 1148
BcoDI	GTCTC	2 cut(s)	550, 725
BcuI	ACTAGT	2 cut(s)	110, 137
BfaI	CTAG	4 cut(s)	111, 138, 213, 668
BfoI	RGCGCY	1 cut(s)	339
BglII	AGATCT	1 cut(s)	82
BisI	GCNGC	4 cut(s)	233, 398, 483, 486
BlsI	GCNGC	4 cut(s)	234, 399, 484, 487
BmcAI	AGTACT	2 cut(s)	969, 986
Bme1390I	CCNGG	4 cut(s)	120, 479, 714, 1148
Bme18I	GGWCC	3 cut(s)	778, 961, 1144
BmgT120I	GGNCC	6 cut(s)	656, 756, 778, 961, 1144, 1199
BmiI	GGNNCC	7 cut(s)	657, 711, 738, 744, 962, 963, 1138
BmrFI	CCNGG	4 cut(s)	120, 479, 714, 1148
BmrI	ACTGGG	2 cut(s)	959, 1206
BmsI	GCATC	5 cut(s)	564, 618, 836, 921, 1059
BmuI	ACTGGG	2 cut(s)	959, 1206
BpmI	CTGGAG	3 cut(s)	696, 899, 1155
BpuEI	CTTGAG	1 cut(s)	817
BpuMI	CCSGG	2 cut(s)	120, 1148
BsaBI	GATNNNNATC	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	550
BsaJI	CCNNGG	6 cut(s)	118, 518, 718, 752, 774, 1140
BsaWI	WCCGGW	4 cut(s)	146, 532, 824, 946
BsaXI	ACNNNNNCTCC	2 cut(s)	694, 724
Bsc4I	CCNNNNNNNGG	6 cut(s)	431, 452, 653, 719, 946, 1146
Bse118I	RCCGGY	4 cut(s)	532, 739, 824, 1012
Bse1I	ACTGG	5 cut(s)	473, 680, 965, 1138, 1201
Bse8I	GATNNNNATC	1 cut(s)	87
BseBI	CCWGG	2 cut(s)	479, 714
BseDI	CCNNGG	6 cut(s)	118, 518, 718, 752, 774, 1140
BseGI	GGATG	3 cut(s)	370, 930, 936
BseJI	GATNNNNATC	1 cut(s)	87
BseLI	CCNNNNNNNGG	6 cut(s)	431, 452, 653, 719, 946, 1146
BseMII	CTCAG	1 cut(s)	719
BseNI	ACTGG	5 cut(s)	473, 680, 965, 1138, 1201
BseRI	GAGGAG	7 cut(s)	167, 170, 173, 176, 179, 182, 185
BseX3I	CGGCCG	1 cut(s)	483
BseXI	GCAGC	1 cut(s)	384
BsgI	GTGCAG	1 cut(s)	590
Bsh1236I	CGCG	1 cut(s)	691
Bsh1285I	CGRYCG	1 cut(s)	486
BshNI	GGYRCC	1 cut(s)	736
BshTI	ACCGGT	2 cut(s)	532, 824
BsiEI	CGRYCG	1 cut(s)	486
BsiHKAI	GWGCWC	1 cut(s)	946
BslFI	GGGAC	3 cut(s)	916, 974, 1077
BslI	CCNNNNNNNGG	6 cut(s)	431, 452, 653, 719, 946, 1146
BsmAI	GTCTC	2 cut(s)	550, 725
BsmBI	CGTCTC	1 cut(s)	725
BsmFI	GGGAC	3 cut(s)	916, 974, 1077
Bso31I	GGTCTC	1 cut(s)	550
Bsp1286I	GDGCHC	1 cut(s)	946
Bsp143I	GATC	4 cut(s)	48, 82, 1038, 1189
BspACI	CCGC	7 cut(s)	190, 205, 233, 482, 486, 497, 685
BspCNI	CTCAG	1 cut(s)	718
BspFNI	CGCG	1 cut(s)	691
BspLI	GGNNCC	7 cut(s)	657, 711, 738, 744, 962, 963, 1138
BspPI	GGATC	1 cut(s)	1184
BspT107I	GGYRCC	1 cut(s)	736
BspTNI	GGTCTC	1 cut(s)	550
BsrBI	CCGCTC	1 cut(s)	687
BsrFI	RCCGGY	4 cut(s)	532, 739, 824, 1012
BsrI	ACTGG	5 cut(s)	473, 680, 965, 1138, 1201
BssAI	RCCGGY	4 cut(s)	532, 739, 824, 1012
BssECI	CCNNGG	6 cut(s)	118, 518, 718, 752, 774, 1140
BssMI	GATC	4 cut(s)	48, 82, 1038, 1189
BssT1I	CCWWGG	3 cut(s)	718, 752, 1140
Bst2UI	CCWGG	2 cut(s)	479, 714
Bst4CI	ACNGT	7 cut(s)	71, 522, 736, 778, 837, 1004, 1095
BstAPI	GCANNNNNTGC	2 cut(s)	846, 987
BstC8I	GCNNGC	7 cut(s)	402, 689, 741, 771, 842, 979, 992
BstDEI	CTNAG	1 cut(s)	705
BstDSI	CCRYGG	2 cut(s)	518, 774
BstF5I	GGATG	3 cut(s)	370, 930, 936
BstFNI	CGCG	1 cut(s)	691
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	3 cut(s)	338, 406, 693
BstKTI	GATC	4 cut(s)	51, 85, 1041, 1192
BstMAI	GTCTC	2 cut(s)	550, 725
BstMBI	GATC	4 cut(s)	48, 82, 1038, 1189
BstMCI	CGRYCG	1 cut(s)	486
BstMWI	GCNNNNNNNGC	5 cut(s)	335, 403, 441, 846, 987
BstNI	CCWGG	2 cut(s)	479, 714
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	4 cut(s)	118, 477, 712, 1146
BstUI	CGCG	1 cut(s)	691
BstV1I	GCAGC	1 cut(s)	384
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BstZI	CGGCCG	1 cut(s)	483
BtgI	CCRYGG	2 cut(s)	518, 774
BtgZI	GCGATG	1 cut(s)	859
BtsCI	GGATG	3 cut(s)	370, 930, 936
BtsIMutI	CAGTG	3 cut(s)	842, 1009, 1194
Cac8I	GCNNGC	7 cut(s)	402, 689, 741, 771, 842, 979, 992
CciNI	GCGGCCGC	1 cut(s)	483
CfoI	GCGC	3 cut(s)	338, 406, 693
Cfr10I	RCCGGY	4 cut(s)	532, 739, 824, 1012
Cfr13I	GGNCC	6 cut(s)	656, 756, 778, 961, 1144, 1199
Csp6I	GTAC	6 cut(s)	257, 833, 859, 871, 968, 985
CspAI	ACCGGT	2 cut(s)	532, 824
CviAII	CATG	3 cut(s)	178, 622, 935
CviQI	GTAC	6 cut(s)	257, 833, 859, 871, 968, 985
DdeI	CTNAG	1 cut(s)	705
DpnI	GATC	4 cut(s)	50, 84, 1040, 1191
DpnII	GATC	4 cut(s)	48, 82, 1038, 1189
EaeI	YGGCCR	3 cut(s)	483, 641, 677
EagI	CGGCCG	1 cut(s)	483
EciI	GGCGGA	1 cut(s)	179
EclXI	CGGCCG	1 cut(s)	483
Eco130I	CCWWGG	3 cut(s)	718, 752, 1140
Eco147I	AGGCCT	1 cut(s)	217
Eco31I	GGTCTC	1 cut(s)	550
Eco47I	GGWCC	3 cut(s)	778, 961, 1144
Eco47III	AGCGCT	1 cut(s)	337
Eco52I	CGGCCG	1 cut(s)	483
EcoO109I	RGGNCCY	1 cut(s)	961
EcoRII	CCWGG	2 cut(s)	477, 712
EcoT14I	CCWWGG	3 cut(s)	718, 752, 1140
EcoT22I	ATGCAT	1 cut(s)	936
ErhI	CCWWGG	3 cut(s)	718, 752, 1140
Esp3I	CGTCTC	1 cut(s)	725
FaeI	CATG	3 cut(s)	181, 625, 938
FaiI	YATR	8 cut(s)	57, 179, 623, 807, 812, 893, 936, 953
FaqI	GGGAC	3 cut(s)	916, 974, 1077
FatI	CATG	3 cut(s)	177, 621, 934
FbaI	TGATCA	1 cut(s)	48
Fnu4HI	GCNGC	4 cut(s)	233, 398, 483, 486
FokI	GGATG	3 cut(s)	357, 937, 943
Fsp4HI	GCNGC	4 cut(s)	233, 398, 483, 486
FspBI	CTAG	4 cut(s)	111, 138, 213, 668
GlaI	GCGC	3 cut(s)	337, 405, 692
GluI	GCNGC	4 cut(s)	233, 398, 483, 486
GsuI	CTGGAG	3 cut(s)	696, 899, 1155
HaeII	RGCGCY	1 cut(s)	339
HhaI	GCGC	3 cut(s)	338, 406, 693
Hin1II	CATG	3 cut(s)	181, 625, 938
Hin6I	GCGC	3 cut(s)	336, 404, 691
HinP1I	GCGC	3 cut(s)	336, 404, 691
HinfI	GANTC	4 cut(s)	34, 673, 703, 1123
HphI	GGTGA	6 cut(s)	83, 161, 194, 398, 814, 839
Hpy166II	GTNNAC	2 cut(s)	389, 781
Hpy188III	TCNNGA	4 cut(s)	74, 548, 602, 878
Hpy8I	GTNNAC	2 cut(s)	389, 781
HpyCH4III	ACNGT	7 cut(s)	71, 522, 736, 778, 837, 1004, 1095
HpyCH4IV	ACGT	1 cut(s)	831
HpyCH4V	TGCA	8 cut(s)	40, 571, 625, 840, 934, 981, 1083, 1179
HpyF10VI	GCNNNNNNNGC	5 cut(s)	335, 403, 441, 846, 987
HpyF3I	CTNAG	1 cut(s)	705
HpySE526I	ACGT	1 cut(s)	831
Hsp92II	CATG	3 cut(s)	181, 625, 938
HspAI	GCGC	3 cut(s)	336, 404, 691
KflI	GGGWCCC	1 cut(s)	961
KroI	GCCGGC	1 cut(s)	739
KroNI	GCCGGC	1 cut(s)	741
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	4 cut(s)	48, 82, 1038, 1189
LmnI	GCTCC	5 cut(s)	343, 715, 748, 880, 1136
Lsp1109I	GCAGC	1 cut(s)	384
LweI	GCATC	5 cut(s)	564, 618, 836, 921, 1059
MaeI	CTAG	4 cut(s)	111, 138, 213, 668
MaeII	ACGT	1 cut(s)	831
MaeIII	GTNAC	5 cut(s)	97, 124, 522, 814, 827
MalI	GATC	4 cut(s)	50, 84, 1040, 1191
MbiI	CCGCTC	1 cut(s)	687
MboI	GATC	4 cut(s)	48, 82, 1038, 1189
MboII	GAAGA	4 cut(s)	26, 29, 344, 533
MfeI	CAATTG	1 cut(s)	1042
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	946
MluCI	AATT	4 cut(s)	196, 790, 887, 1042
MlyI	GAGTC	1 cut(s)	697
MmeI	TCCRAC	1 cut(s)	306
Mph1103I	ATGCAT	1 cut(s)	936
MroNI	GCCGGC	1 cut(s)	739
MroXI	GAANNNNTTC	1 cut(s)	1103
MslI	CAYNNNNRTG	3 cut(s)	549, 603, 626
MspR9I	CCNGG	4 cut(s)	120, 479, 714, 1148
MunI	CAATTG	1 cut(s)	1042
MvaI	CCWGG	2 cut(s)	479, 714
MvnI	CGCG	1 cut(s)	691
MwoI	GCNNNNNNNGC	5 cut(s)	335, 403, 441, 846, 987
NaeI	GCCGGC	1 cut(s)	741
NciI	CCSGG	2 cut(s)	120, 1148
NdeII	GATC	4 cut(s)	48, 82, 1038, 1189
NgoMIV	GCCGGC	1 cut(s)	739
NlaIII	CATG	3 cut(s)	181, 625, 938
NlaIV	GGNNCC	7 cut(s)	657, 711, 738, 744, 962, 963, 1138
NmuCI	GTSAC	5 cut(s)	97, 124, 522, 814, 827
NotI	GCGGCCGC	1 cut(s)	483
NsiI	ATGCAT	1 cut(s)	936
NspI	RCATGY	1 cut(s)	181
PceI	AGGCCT	1 cut(s)	217
PdiI	GCCGGC	1 cut(s)	741
PdmI	GAANNNNTTC	1 cut(s)	1103
PfeI	GAWTC	3 cut(s)	34, 673, 1123
PinAI	ACCGGT	2 cut(s)	532, 824
PkrI	GCNGC	4 cut(s)	234, 399, 484, 487
PleI	GAGTC	1 cut(s)	697
PpsI	GAGTC	1 cut(s)	697
PpuMI	RGGWCCY	1 cut(s)	961
Psp5II	RGGWCCY	1 cut(s)	961
Psp6I	CCWGG	2 cut(s)	477, 712
PspGI	CCWGG	2 cut(s)	477, 712
PspN4I	GGNNCC	7 cut(s)	657, 711, 738, 744, 962, 963, 1138
PspPI	GGNCC	6 cut(s)	656, 756, 778, 961, 1144, 1199
PspPPI	RGGWCCY	1 cut(s)	961
PsuI	RGATCY	1 cut(s)	82
RsaI	GTAC	6 cut(s)	258, 834, 860, 872, 969, 986
RsaNI	GTAC	6 cut(s)	257, 833, 859, 871, 968, 985
RseI	CAYNNNNRTG	3 cut(s)	549, 603, 626
SatI	GCNGC	4 cut(s)	233, 398, 483, 486
Sau3AI	GATC	4 cut(s)	48, 82, 1038, 1189
Sau96I	GGNCC	6 cut(s)	656, 756, 778, 961, 1144, 1199
ScaI	AGTACT	2 cut(s)	969, 986
SchI	GAGTC	1 cut(s)	697
ScrFI	CCNGG	4 cut(s)	120, 479, 714, 1148
SduI	GDGCHC	1 cut(s)	946
SfaNI	GCATC	5 cut(s)	564, 618, 836, 921, 1059
SgrAI	CRCCGGYG	2 cut(s)	532, 824
SinI	GGWCC	3 cut(s)	778, 961, 1144
SmiMI	CAYNNNNRTG	3 cut(s)	549, 603, 626
SmlI	CTYRAG	1 cut(s)	796
SmoI	CTYRAG	1 cut(s)	796
SpeI	ACTAGT	2 cut(s)	110, 137
Sse9I	AATT	4 cut(s)	196, 790, 887, 1042
SseBI	AGGCCT	1 cut(s)	217
SsiI	CCGC	7 cut(s)	190, 205, 233, 482, 486, 497, 685
SspI	AATATT	1 cut(s)	1103
SspMI	CTAG	4 cut(s)	111, 138, 213, 668
StuI	AGGCCT	1 cut(s)	217
StyD4I	CCNGG	4 cut(s)	118, 477, 712, 1146
StyI	CCWWGG	3 cut(s)	718, 752, 1140
TaaI	ACNGT	7 cut(s)	71, 522, 736, 778, 837, 1004, 1095
TaiI	ACGT	1 cut(s)	834
TaqI	TCGA	4 cut(s)	464, 701, 1089, 1129
TaqII	GACCGA	1 cut(s)	954
TasI	AATT	4 cut(s)	196, 790, 887, 1042
TatI	WGTACW	4 cut(s)	256, 870, 967, 984
TauI	GCSGC	3 cut(s)	235, 485, 488
TfiI	GAWTC	3 cut(s)	34, 673, 1123
TscAI	CASTG	3 cut(s)	842, 1009, 1201
TseFI	GTSAC	5 cut(s)	97, 124, 522, 814, 827
TseI	GCWGC	1 cut(s)	397
Tsp45I	GTSAC	5 cut(s)	97, 124, 522, 814, 827
TspDTI	ATGAA	3 cut(s)	260, 533, 587
TspGWI	ACGGA	1 cut(s)	735
TspRI	CASTG	3 cut(s)	842, 1009, 1201
VpaK11BI	GGWCC	3 cut(s)	778, 961, 1144
XapI	RAATTY	1 cut(s)	887
XceI	RCATGY	1 cut(s)	181
XmnI	GAANNNNTTC	1 cut(s)	1103
XspI	CTAG	4 cut(s)	111, 138, 213, 668
ZrmI	AGTACT	2 cut(s)	969, 986
Zsp2I	ATGCAT	1 cut(s)	936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.