Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004320

Physical Location & Seq

Genomic Coordinates Forward (+)

24383186 .. 24383683

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G247500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGCTCAAACAGCGCAAACCAGAATACATAGAAGCTCCATTCCCTTGGGCTGCACCAAAACGTGCTACTGTCCACAGTCTTGAATATCTCCATTCCAATCGCATCGGCACGATCAGCGGCCTTGTTCAATGCCAGAAGTGTGACGAAAGCTATGAGATTTCTTATGATTTGAGGCAGAAGTTCACGGAGATTGCGAGTTACATTTCGGAACACAAAAGCTCCATGCATGACAGAGCACCAACCGTTTGGATGAATCCCGCATTGCCTGATTGCAAGCATTGTGATCAGAGGAATTGCATGAAGCCTGTGATTTCAAAGAAACGGTCCATCAATTGGTTATTCTTGTTTTTGGGTCAAATGCTTGGGTGCTGTCAGACTTCTGAGTTGAAGTATTTCTGCAAGCACACCAAGAATCATAGGACTGGTGCTAAAGATAGAGTCTTGCATCTTACTTATTTAGGCATCTACAAACAGCTTGCTCCCCATTGGACCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

19.29

Weight (kDa)

9.29

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49330 AT2G16190 AT2G16190
fragaria_vesca	FvH4_1g24220 FvH4_2g08460
malus_domestica	MD04G1118400.v1.1 MD10G1078300.v1.1
prunus_persica	Prupe.6G247500_v2.0.a1 Prupe.6G247600_v2.0.a1 Prupe.6G247700_v2.0.a1 Prupe.8G100200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0467741 RchiOBHm_Chr6g0263791
rosa_laevigata	RLG00000014312 RLG00000024477
rosa_multiflora	Rmu_sc0001793.1_g000022 Rmu_sc0009383.1_g000005
rosa_roxburghii	Rroxscaffold_6G00413460 Rroxscaffold_7G00203930
rosa_rugosa	Rorug03G0089400 Rorug03G0089500 Rorug06G0006200
rosa_samantha	Rh3AG137900 Rh3BG159200 Rh3CG159100 Rh3DG159600 Rh6AG125600 Rh6BG122100 Rh6CG120400 Rh6DG108200
rosa_wichuraiana	Rw3G013060 Rw6G010930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	333
AciI	CCGC	2 cut(s)	117, 258
AfiI	CCNNNNNNNGG	1 cut(s)	333
AgsI	TTSAA	4 cut(s)	83, 128, 315, 388
AluBI	AGCT	4 cut(s)	35, 150, 219, 475
AluI	AGCT	4 cut(s)	35, 150, 219, 475
Alw21I	GWGCWC	1 cut(s)	238
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	1 cut(s)	50
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
Asp700I	GAANNNNTTC	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	15
AspS9I	GGNCC	2 cut(s)	324, 489
AvaII	GGWCC	2 cut(s)	324, 489
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	335
BclI	TGATCA	1 cut(s)	283
BisI	GCNGC	2 cut(s)	51, 118
BlsI	GCNGC	2 cut(s)	52, 119
Bme18I	GGWCC	2 cut(s)	324, 489
BmgT120I	GGNCC	2 cut(s)	324, 489
BmiI	GGNNCC	1 cut(s)	491
BmsI	GCATC	3 cut(s)	111, 454, 471
BsaJI	CCNNGG	1 cut(s)	44
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
Bse1I	ACTGG	1 cut(s)	427
Bse3DI	GCAATG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseMI	GCAATG	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	372
BseNI	ACTGG	1 cut(s)	427
BseXI	GCAGC	1 cut(s)	37
BsgI	GTGCAG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	238
BslI	CCNNNNNNNGG	1 cut(s)	333
BsnI	GGCC	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	2 cut(s)	111, 283
BspACI	CCGC	2 cut(s)	117, 258
BspANI	GGCC	1 cut(s)	120
BspCNI	CTCAG	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	427
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	2 cut(s)	111, 283
BssT1I	CCWWGG	1 cut(s)	44
Bst4CI	ACNGT	4 cut(s)	70, 77, 244, 324
BstC8I	GCNNGC	3 cut(s)	275, 401, 477
BstDEI	CTNAG	1 cut(s)	381
BstF5I	GGATG	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	2 cut(s)	114, 286
BstMBI	GATC	2 cut(s)	111, 283
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 114
BstV1I	GCAGC	1 cut(s)	37
BstXI	CCANNNNNNTGG	2 cut(s)	45, 246
BsuRI	GGCC	1 cut(s)	120
BtsCI	GGATG	1 cut(s)	255
Cac8I	GCNNGC	3 cut(s)	275, 401, 477
CfoI	GCGC	1 cut(s)	15
Cfr13I	GGNCC	2 cut(s)	324, 489
CviAII	CATG	3 cut(s)	223, 227, 298
CviJI	RGCY	7 cut(s)	35, 50, 120, 150, 219, 304, 475
CviKI_1	RGCY	7 cut(s)	35, 50, 120, 150, 219, 304, 475
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	2 cut(s)	113, 285
DpnII	GATC	2 cut(s)	111, 283
Eco130I	CCWWGG	1 cut(s)	44
Eco47I	GGWCC	2 cut(s)	324, 489
EcoT14I	CCWWGG	1 cut(s)	44
EcoT22I	ATGCAT	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	44
FaeI	CATG	3 cut(s)	226, 230, 301
FaiI	YATR	7 cut(s)	29, 153, 165, 224, 228, 299, 417
FatI	CATG	3 cut(s)	222, 226, 297
FauI	CCCGC	1 cut(s)	265
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	2 cut(s)	51, 118
FokI	GGATG	1 cut(s)	262
Fsp4HI	GCNGC	2 cut(s)	51, 118
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	2 cut(s)	51, 118
HaeIII	GGCC	1 cut(s)	120
HhaI	GCGC	1 cut(s)	15
Hin1II	CATG	3 cut(s)	226, 230, 301
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HinfI	GANTC	3 cut(s)	253, 412, 438
Hpy166II	GTNNAC	2 cut(s)	73, 183
Hpy188I	TCNGA	4 cut(s)	208, 288, 375, 382
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	2 cut(s)	73, 183
HpyCH4III	ACNGT	4 cut(s)	70, 77, 244, 324
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	6 cut(s)	53, 226, 273, 297, 399, 445
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 114
HpyF3I	CTNAG	1 cut(s)	381
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	3 cut(s)	226, 230, 301
HspAI	GCGC	1 cut(s)	13
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	2 cut(s)	111, 283
LmnI	GCTCC	3 cut(s)	40, 224, 484
LpnPI	CCDG	5 cut(s)	33, 146, 279, 318, 408
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	3 cut(s)	111, 454, 471
MaeII	ACGT	1 cut(s)	61
MaeIII	GTNAC	2 cut(s)	140, 197
MalI	GATC	2 cut(s)	113, 285
MboI	GATC	2 cut(s)	111, 283
MfeI	CAATTG	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	2 cut(s)	292, 331
MlyI	GAGTC	1 cut(s)	447
MnlI	CCTC	2 cut(s)	165, 282
Mph1103I	ATGCAT	1 cut(s)	228
MroXI	GAANNNNTTC	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	117
MunI	CAATTG	1 cut(s)	331
MwoI	GCNNNNNNNGC	2 cut(s)	10, 114
NdeII	GATC	2 cut(s)	111, 283
NlaIII	CATG	3 cut(s)	226, 230, 301
NlaIV	GGNNCC	1 cut(s)	491
NmuCI	GTSAC	1 cut(s)	140
NsiI	ATGCAT	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	392
PfeI	GAWTC	2 cut(s)	253, 412
PflMI	CCANNNNNTGG	1 cut(s)	333
PkrI	GCNGC	2 cut(s)	52, 119
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
PspN4I	GGNNCC	1 cut(s)	491
PspPI	GGNCC	2 cut(s)	324, 489
SatI	GCNGC	2 cut(s)	51, 118
Sau3AI	GATC	2 cut(s)	111, 283
Sau96I	GGNCC	2 cut(s)	324, 489
SchI	GAGTC	1 cut(s)	447
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	5 cut(s)	37, 64, 152, 221, 477
SfaNI	GCATC	3 cut(s)	111, 454, 471
SinI	GGWCC	2 cut(s)	324, 489
Sse9I	AATT	2 cut(s)	292, 331
SsiI	CCGC	2 cut(s)	117, 258
StyI	CCWWGG	1 cut(s)	44
TaaI	ACNGT	4 cut(s)	70, 77, 244, 324
TaiI	ACGT	1 cut(s)	64
TasI	AATT	2 cut(s)	292, 331
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	2 cut(s)	253, 412
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	266, 314
TspGWI	ACGGA	1 cut(s)	200
Van91I	CCANNNNNTGG	1 cut(s)	333
VpaK11BI	GGWCC	2 cut(s)	324, 489
XmnI	GAANNNNTTC	1 cut(s)	392
Zsp2I	ATGCAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.