Rw6G010930

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0004320
Physical Location & Seq
Forward (+)
19180751 .. 19181965
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G010930.1

Sequence Viewer

Length: 1215 bp
ATGGACAACGAGGAAGAAGAAAGGCAGAACAAGAATCTGCAAGAGATGATCAATCATAAACGAAAGAACAGTCAAGAACAAGATCTCAATCACCAAGTCACATCATCTACTAGTTTCCCCGGTGTCACATCATCAACTAGTTTCTCCGGTGAGGAGGAGGAGGAGGAGGAGGAGGACATGCTGGAACTCCGCCTCAATTCTCACCGCCCCTCTAGGCCTCGCCCAAGTGTGCCGCAACCACAGACCCAAATCCCTGTACTGCCAGAGCTTCATCAACTCTCCAACACACACTCTCGCCCAAATCTACTGCCAACACCACAACCAGAGGCTCAAAGCGCTCCATCAAATCATCTTCAACTCTCAAACACACATCCTCTTTACAGAGGTGAACCCTTGCTGCTTGCGCCAGAGCCTCTCCTTTATCCCCTCAATGGCTTTTATCGCCCTAATGGTGGTCAGTCCTCGATTACACCAGTCCAGGCGGCCGCACCTCCACCGCCACCTCCACCTCCACCTCCACGGTCACAACCACCGGTGGTTCTTCATCAAGATGTGAGACCAAGAGCCGTGCAGATGCCACAACCACAGGTGGTTTTTCAGCAAGATGTGAGGCCAAGAGCCATGCAGATGCCACCTCTACGGCCACCACCTGTGGGGCCAAGACCACTAGGGATTCGGCCAGTCCGCTCGCGCCGGAACTCGACTCAGGCTCCAGGCCAAGGAAAGAGCGAGACGGTGCCGGCTCCGTTTCCTTGGGCCACCACAAAGCGAGCCACGGTCCACAACCTGAATTACTTGAGGACACATAATATAGTGACCATCACCGGTGACGTACAGTGCAAGCGATGCGAGAAGCAGTACGAGATTGAGTACAATCTGGAGCAGAAATTTATGGAGGTGGGGACTTACATTGTTGAGAACAGGATGAGGATGCATGACCGAGCACCGGATATGTGGAGGGACCCAGTACTTCCGGCTTGCAAGTACTGCGAGCAAGAGAACAGTGCGAGGCCGGTCTTGGCTGACAAAAAGAGGGCGATCAATTGGTTGTTTCTGTTTTTGGGACAGATGCTTGGGTGTTGCACACTCGAACAGTTGAAATATTTCTGTAAGCACACAAAGAATCATCGAACTGGAGCCAAGGACCGGGTTCTTTATCTAACTTATCTGTGTTTGTGCAAACAGCTTGATCCCACTGGGCCTTTTGATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

404

Amino Acids

46.07

Weight (kDa)

8.66

Isoelectric Point (pI)

75.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7086 PF23324 263 - 396 1.3e-65 Domain of unknown function (DUF7086)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 736
AccBSI CCGCTC 1 cut(s) 687
AccII CGCG 1 cut(s) 691
AciI CCGC 7 cut(s) 190, 205, 233, 482, 486, 497, 685
AclWI GGATC 1 cut(s) 1184
AcoI YGGCCR 3 cut(s) 483, 641, 677
AcsI RAATTY 1 cut(s) 887
AfaI GTAC 6 cut(s) 258, 834, 860, 872, 969, 986
AfeI AGCGCT 1 cut(s) 337
AfiI CCNNNNNNNGG 6 cut(s) 431, 452, 653, 719, 946, 1146
AgeI ACCGGT 2 cut(s) 532, 824
AgsI TTSAA 2 cut(s) 356, 1099
AhlI ACTAGT 2 cut(s) 110, 137
AjnI CCWGG 2 cut(s) 477, 712
AluBI AGCT 2 cut(s) 268, 1186
AluI AGCT 2 cut(s) 268, 1186
Alw21I GWGCWC 1 cut(s) 946
Alw26I GTCTC 2 cut(s) 550, 725
AlwI GGATC 1 cut(s) 1184
Aor51HI AGCGCT 1 cut(s) 337
ApeKI GCWGC 1 cut(s) 397
ApoI RAATTY 1 cut(s) 887
ArsI GACNNNNNNTTYG 2 cut(s) 55, 87
AsiGI ACCGGT 2 cut(s) 532, 824
Asp700I GAANNNNTTC 1 cut(s) 1103
AspLEI GCGC 3 cut(s) 338, 406, 693
AspS9I GGNCC 6 cut(s) 656, 756, 778, 961, 1144, 1199
AsuC2I CCSGG 2 cut(s) 120, 1148
AsuHPI GGTGA 6 cut(s) 83, 161, 194, 398, 814, 839
AvaII GGWCC 3 cut(s) 778, 961, 1144
BanI GGYRCC 1 cut(s) 736
Bbv12I GWGCWC 1 cut(s) 946
BbvI GCAGC 1 cut(s) 384
BccI CCATC 2 cut(s) 349, 827
BceAI ACGGC 2 cut(s) 551, 656
BciT130I CCWGG 2 cut(s) 479, 714
BclI TGATCA 1 cut(s) 48
BcnI CCSGG 2 cut(s) 120, 1148
BcoDI GTCTC 2 cut(s) 550, 725
BcuI ACTAGT 2 cut(s) 110, 137
BfaI CTAG 4 cut(s) 111, 138, 213, 668
BfoI RGCGCY 1 cut(s) 339
BglII AGATCT 1 cut(s) 82
BisI GCNGC 4 cut(s) 233, 398, 483, 486
BlsI GCNGC 4 cut(s) 234, 399, 484, 487
BmcAI AGTACT 2 cut(s) 969, 986
Bme1390I CCNGG 4 cut(s) 120, 479, 714, 1148
Bme18I GGWCC 3 cut(s) 778, 961, 1144
BmgT120I GGNCC 6 cut(s) 656, 756, 778, 961, 1144, 1199
BmiI GGNNCC 7 cut(s) 657, 711, 738, 744, 962, 963, 1138
BmrFI CCNGG 4 cut(s) 120, 479, 714, 1148
BmrI ACTGGG 2 cut(s) 959, 1206
BmsI GCATC 5 cut(s) 564, 618, 836, 921, 1059
BmuI ACTGGG 2 cut(s) 959, 1206
BpmI CTGGAG 3 cut(s) 696, 899, 1155
BpuEI CTTGAG 1 cut(s) 817
BpuMI CCSGG 2 cut(s) 120, 1148
BsaBI GATNNNNATC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 550
BsaJI CCNNGG 6 cut(s) 118, 518, 718, 752, 774, 1140
BsaWI WCCGGW 4 cut(s) 146, 532, 824, 946
BsaXI ACNNNNNCTCC 2 cut(s) 694, 724
Bsc4I CCNNNNNNNGG 6 cut(s) 431, 452, 653, 719, 946, 1146
Bse118I RCCGGY 4 cut(s) 532, 739, 824, 1012
Bse1I ACTGG 5 cut(s) 473, 680, 965, 1138, 1201
Bse8I GATNNNNATC 1 cut(s) 87
BseBI CCWGG 2 cut(s) 479, 714
BseDI CCNNGG 6 cut(s) 118, 518, 718, 752, 774, 1140
BseGI GGATG 3 cut(s) 370, 930, 936
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 6 cut(s) 431, 452, 653, 719, 946, 1146
BseMII CTCAG 1 cut(s) 719
BseNI ACTGG 5 cut(s) 473, 680, 965, 1138, 1201
BseRI GAGGAG 7 cut(s) 167, 170, 173, 176, 179, 182, 185
BseX3I CGGCCG 1 cut(s) 483
BseXI GCAGC 1 cut(s) 384
BsgI GTGCAG 1 cut(s) 590
Bsh1236I CGCG 1 cut(s) 691
Bsh1285I CGRYCG 1 cut(s) 486
BshNI GGYRCC 1 cut(s) 736
BshTI ACCGGT 2 cut(s) 532, 824
BsiEI CGRYCG 1 cut(s) 486
BsiHKAI GWGCWC 1 cut(s) 946
BslFI GGGAC 3 cut(s) 916, 974, 1077
BslI CCNNNNNNNGG 6 cut(s) 431, 452, 653, 719, 946, 1146
BsmAI GTCTC 2 cut(s) 550, 725
BsmBI CGTCTC 1 cut(s) 725
BsmFI GGGAC 3 cut(s) 916, 974, 1077
Bso31I GGTCTC 1 cut(s) 550
Bsp1286I GDGCHC 1 cut(s) 946
Bsp143I GATC 4 cut(s) 48, 82, 1038, 1189
BspACI CCGC 7 cut(s) 190, 205, 233, 482, 486, 497, 685
BspCNI CTCAG 1 cut(s) 718
BspFNI CGCG 1 cut(s) 691
BspLI GGNNCC 7 cut(s) 657, 711, 738, 744, 962, 963, 1138
BspPI GGATC 1 cut(s) 1184
BspT107I GGYRCC 1 cut(s) 736
BspTNI GGTCTC 1 cut(s) 550
BsrBI CCGCTC 1 cut(s) 687
BsrFI RCCGGY 4 cut(s) 532, 739, 824, 1012
BsrI ACTGG 5 cut(s) 473, 680, 965, 1138, 1201
BssAI RCCGGY 4 cut(s) 532, 739, 824, 1012
BssECI CCNNGG 6 cut(s) 118, 518, 718, 752, 774, 1140
BssMI GATC 4 cut(s) 48, 82, 1038, 1189
BssT1I CCWWGG 3 cut(s) 718, 752, 1140
Bst2UI CCWGG 2 cut(s) 479, 714
Bst4CI ACNGT 7 cut(s) 71, 522, 736, 778, 837, 1004, 1095
BstAPI GCANNNNNTGC 2 cut(s) 846, 987
BstC8I GCNNGC 7 cut(s) 402, 689, 741, 771, 842, 979, 992
BstDEI CTNAG 1 cut(s) 705
BstDSI CCRYGG 2 cut(s) 518, 774
BstF5I GGATG 3 cut(s) 370, 930, 936
BstFNI CGCG 1 cut(s) 691
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 3 cut(s) 338, 406, 693
BstKTI GATC 4 cut(s) 51, 85, 1041, 1192
BstMAI GTCTC 2 cut(s) 550, 725
BstMBI GATC 4 cut(s) 48, 82, 1038, 1189
BstMCI CGRYCG 1 cut(s) 486
BstMWI GCNNNNNNNGC 5 cut(s) 335, 403, 441, 846, 987
BstNI CCWGG 2 cut(s) 479, 714
BstNSI RCATGY 1 cut(s) 181
BstSCI CCNGG 4 cut(s) 118, 477, 712, 1146
BstUI CGCG 1 cut(s) 691
BstV1I GCAGC 1 cut(s) 384
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BstZI CGGCCG 1 cut(s) 483
BtgI CCRYGG 2 cut(s) 518, 774
BtgZI GCGATG 1 cut(s) 859
BtsCI GGATG 3 cut(s) 370, 930, 936
BtsIMutI CAGTG 3 cut(s) 842, 1009, 1194
Cac8I GCNNGC 7 cut(s) 402, 689, 741, 771, 842, 979, 992
CciNI GCGGCCGC 1 cut(s) 483
CfoI GCGC 3 cut(s) 338, 406, 693
Cfr10I RCCGGY 4 cut(s) 532, 739, 824, 1012
Cfr13I GGNCC 6 cut(s) 656, 756, 778, 961, 1144, 1199
Csp6I GTAC 6 cut(s) 257, 833, 859, 871, 968, 985
CspAI ACCGGT 2 cut(s) 532, 824
CviAII CATG 3 cut(s) 178, 622, 935
CviQI GTAC 6 cut(s) 257, 833, 859, 871, 968, 985
DdeI CTNAG 1 cut(s) 705
DpnI GATC 4 cut(s) 50, 84, 1040, 1191
DpnII GATC 4 cut(s) 48, 82, 1038, 1189
EaeI YGGCCR 3 cut(s) 483, 641, 677
EagI CGGCCG 1 cut(s) 483
EciI GGCGGA 1 cut(s) 179
EclXI CGGCCG 1 cut(s) 483
Eco130I CCWWGG 3 cut(s) 718, 752, 1140
Eco147I AGGCCT 1 cut(s) 217
Eco31I GGTCTC 1 cut(s) 550
Eco47I GGWCC 3 cut(s) 778, 961, 1144
Eco47III AGCGCT 1 cut(s) 337
Eco52I CGGCCG 1 cut(s) 483
EcoO109I RGGNCCY 1 cut(s) 961
EcoRII CCWGG 2 cut(s) 477, 712
EcoT14I CCWWGG 3 cut(s) 718, 752, 1140
EcoT22I ATGCAT 1 cut(s) 936
ErhI CCWWGG 3 cut(s) 718, 752, 1140
Esp3I CGTCTC 1 cut(s) 725
FaeI CATG 3 cut(s) 181, 625, 938
FaiI YATR 8 cut(s) 57, 179, 623, 807, 812, 893, 936, 953
FaqI GGGAC 3 cut(s) 916, 974, 1077
FatI CATG 3 cut(s) 177, 621, 934
FbaI TGATCA 1 cut(s) 48
Fnu4HI GCNGC 4 cut(s) 233, 398, 483, 486
FokI GGATG 3 cut(s) 357, 937, 943
Fsp4HI GCNGC 4 cut(s) 233, 398, 483, 486
FspBI CTAG 4 cut(s) 111, 138, 213, 668
GlaI GCGC 3 cut(s) 337, 405, 692
GluI GCNGC 4 cut(s) 233, 398, 483, 486
GsuI CTGGAG 3 cut(s) 696, 899, 1155
HaeII RGCGCY 1 cut(s) 339
HhaI GCGC 3 cut(s) 338, 406, 693
Hin1II CATG 3 cut(s) 181, 625, 938
Hin6I GCGC 3 cut(s) 336, 404, 691
HinP1I GCGC 3 cut(s) 336, 404, 691
HinfI GANTC 4 cut(s) 34, 673, 703, 1123
HphI GGTGA 6 cut(s) 83, 161, 194, 398, 814, 839
Hpy166II GTNNAC 2 cut(s) 389, 781
Hpy188III TCNNGA 3 cut(s) 74, 548, 878
Hpy8I GTNNAC 2 cut(s) 389, 781
HpyCH4III ACNGT 7 cut(s) 71, 522, 736, 778, 837, 1004, 1095
HpyCH4IV ACGT 1 cut(s) 831
HpyCH4V TGCA 8 cut(s) 40, 571, 625, 840, 934, 981, 1083, 1179
HpyF10VI GCNNNNNNNGC 5 cut(s) 335, 403, 441, 846, 987
HpyF3I CTNAG 1 cut(s) 705
HpySE526I ACGT 1 cut(s) 831
Hsp92II CATG 3 cut(s) 181, 625, 938
HspAI GCGC 3 cut(s) 336, 404, 691
KflI GGGWCCC 1 cut(s) 961
KroI GCCGGC 1 cut(s) 739
KroNI GCCGGC 1 cut(s) 741
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 4 cut(s) 48, 82, 1038, 1189
LmnI GCTCC 5 cut(s) 343, 715, 748, 880, 1136
Lsp1109I GCAGC 1 cut(s) 384
LweI GCATC 5 cut(s) 564, 618, 836, 921, 1059
MaeI CTAG 4 cut(s) 111, 138, 213, 668
MaeII ACGT 1 cut(s) 831
MaeIII GTNAC 5 cut(s) 97, 124, 522, 814, 827
MalI GATC 4 cut(s) 50, 84, 1040, 1191
MbiI CCGCTC 1 cut(s) 687
MboI GATC 4 cut(s) 48, 82, 1038, 1189
MboII GAAGA 4 cut(s) 26, 29, 344, 533
MfeI CAATTG 1 cut(s) 1042
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 946
MluCI AATT 4 cut(s) 196, 790, 887, 1042
MlyI GAGTC 1 cut(s) 697
MmeI TCCRAC 1 cut(s) 306
Mph1103I ATGCAT 1 cut(s) 936
MroNI GCCGGC 1 cut(s) 739
MroXI GAANNNNTTC 1 cut(s) 1103
MslI CAYNNNNRTG 2 cut(s) 549, 626
MspR9I CCNGG 4 cut(s) 120, 479, 714, 1148
MunI CAATTG 1 cut(s) 1042
MvaI CCWGG 2 cut(s) 479, 714
MvnI CGCG 1 cut(s) 691
MwoI GCNNNNNNNGC 5 cut(s) 335, 403, 441, 846, 987
NaeI GCCGGC 1 cut(s) 741
NciI CCSGG 2 cut(s) 120, 1148
NdeII GATC 4 cut(s) 48, 82, 1038, 1189
NgoMIV GCCGGC 1 cut(s) 739
NlaIII CATG 3 cut(s) 181, 625, 938
NlaIV GGNNCC 7 cut(s) 657, 711, 738, 744, 962, 963, 1138
NmuCI GTSAC 5 cut(s) 97, 124, 522, 814, 827
NotI GCGGCCGC 1 cut(s) 483
NsiI ATGCAT 1 cut(s) 936
NspI RCATGY 1 cut(s) 181
PceI AGGCCT 1 cut(s) 217
PdiI GCCGGC 1 cut(s) 741
PdmI GAANNNNTTC 1 cut(s) 1103
PfeI GAWTC 3 cut(s) 34, 673, 1123
PinAI ACCGGT 2 cut(s) 532, 824
PkrI GCNGC 4 cut(s) 234, 399, 484, 487
PleI GAGTC 1 cut(s) 697
PpsI GAGTC 1 cut(s) 697
PpuMI RGGWCCY 1 cut(s) 961
Psp5II RGGWCCY 1 cut(s) 961
Psp6I CCWGG 2 cut(s) 477, 712
PspGI CCWGG 2 cut(s) 477, 712
PspN4I GGNNCC 7 cut(s) 657, 711, 738, 744, 962, 963, 1138
PspPI GGNCC 6 cut(s) 656, 756, 778, 961, 1144, 1199
PspPPI RGGWCCY 1 cut(s) 961
PsuI RGATCY 1 cut(s) 82
RsaI GTAC 6 cut(s) 258, 834, 860, 872, 969, 986
RsaNI GTAC 6 cut(s) 257, 833, 859, 871, 968, 985
RseI CAYNNNNRTG 2 cut(s) 549, 626
SatI GCNGC 4 cut(s) 233, 398, 483, 486
Sau3AI GATC 4 cut(s) 48, 82, 1038, 1189
Sau96I GGNCC 6 cut(s) 656, 756, 778, 961, 1144, 1199
ScaI AGTACT 2 cut(s) 969, 986
SchI GAGTC 1 cut(s) 697
ScrFI CCNGG 4 cut(s) 120, 479, 714, 1148
SduI GDGCHC 1 cut(s) 946
SfaNI GCATC 5 cut(s) 564, 618, 836, 921, 1059
SgrAI CRCCGGYG 2 cut(s) 532, 824
SinI GGWCC 3 cut(s) 778, 961, 1144
SmiMI CAYNNNNRTG 2 cut(s) 549, 626
SmlI CTYRAG 1 cut(s) 796
SmoI CTYRAG 1 cut(s) 796
SpeI ACTAGT 2 cut(s) 110, 137
Sse9I AATT 4 cut(s) 196, 790, 887, 1042
SseBI AGGCCT 1 cut(s) 217
SsiI CCGC 7 cut(s) 190, 205, 233, 482, 486, 497, 685
SspI AATATT 1 cut(s) 1103
SspMI CTAG 4 cut(s) 111, 138, 213, 668
StuI AGGCCT 1 cut(s) 217
StyD4I CCNGG 4 cut(s) 118, 477, 712, 1146
StyI CCWWGG 3 cut(s) 718, 752, 1140
TaaI ACNGT 7 cut(s) 71, 522, 736, 778, 837, 1004, 1095
TaiI ACGT 1 cut(s) 834
TaqI TCGA 4 cut(s) 464, 701, 1089, 1129
TaqII GACCGA 1 cut(s) 954
TasI AATT 4 cut(s) 196, 790, 887, 1042
TatI WGTACW 4 cut(s) 256, 870, 967, 984
TauI GCSGC 3 cut(s) 235, 485, 488
TfiI GAWTC 3 cut(s) 34, 673, 1123
TscAI CASTG 3 cut(s) 842, 1009, 1201
TseFI GTSAC 5 cut(s) 97, 124, 522, 814, 827
TseI GCWGC 1 cut(s) 397
Tsp45I GTSAC 5 cut(s) 97, 124, 522, 814, 827
TspDTI ATGAA 2 cut(s) 260, 533
TspGWI ACGGA 1 cut(s) 735
TspRI CASTG 3 cut(s) 842, 1009, 1201
VpaK11BI GGWCC 3 cut(s) 778, 961, 1144
XapI RAATTY 1 cut(s) 887
XceI RCATGY 1 cut(s) 181
XmnI GAANNNNTTC 1 cut(s) 1103
XspI CTAG 4 cut(s) 111, 138, 213, 668
ZrmI AGTACT 2 cut(s) 969, 986
Zsp2I ATGCAT 1 cut(s) 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.