Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004320

Physical Location & Seq

Genomic Coordinates Reverse (-)

13162458 .. 13163657

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G100200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAATAACAACGACCAAGGAATCAACAACAAGAGAAAGAACAACAACCAAGATCTTAACCAACCAATGCTCTCCGAAGAAGACGAAGACGACATGCTCGCTCTCTCTCTCAGTCCTTACCGTCCATCAAGGCCTCGACGAAGTCCGGACCCGGTAGATCCACCCCCACCACCGCCTTCGCTGATGCCGTCATTGTTCATGCAAACCCTCACGGCCCAAAACCCTCCACCCCAACCTCTACAACTCTCACCCTCACACCCTCTTTACATGACTACACAACAACCACCTTCCCTCATCCCCTCCTCCATGCCCTTGGTTTATTCCCAAGAGCCGGGCCGGGGGCCTTCTACATCTCGCCCAATTCGTACCCGACGAAACCCTACTCAGGTTCCTCGGGAGGGAAAGAGTAAGACTGTCCCGGCCCCTTTTCCGTGGGCCACCACCAGGCGGGCCACGGTGCACACTCTTGAGTACTTGTTGTCAAGGGGTATCCGTACTATCACTGGTGACGTGCAGTGCAAGCGATGTGAAAAGTCATTCGTGGTGGAGTACGATCTGGAGGAGAAGTTTACTGATGTTGGGAGTTTTGTTGCTGAGAATAAGAACACGCTGCGTGATAGGGCACCGCGTTCATGGACGACGCCGGTTCTTCCTAGGTGCAGGCATTGTCAAGAAGAGAGCAGCGGGAAACCGATCATAGCGGAGAAAAAGAAGGCCATCAACTGGCTGTTTTTGCTGCTAGGGCAGATGCTTGGTTGCTGCACGCTTGAGCAGTTGAAGTATTTCTGTAAGCACACCAAAAATCACCGAACCGGCGCCAAGGATCGAGTTCTTTTCCTCACCTATCTTGAGCTGTGTAAACAACTCGATCCCAATGGACCTTTCTACCGATCAAATTCGAAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

303

Amino Acids

34.44

Weight (kDa)

9.54

Isoelectric Point (pI)

62.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49330 AT2G16190 AT2G16190
fragaria_vesca	FvH4_1g24220 FvH4_2g08460
malus_domestica	MD04G1118400.v1.1 MD10G1078300.v1.1
prunus_persica	Prupe.6G247500_v2.0.a1 Prupe.6G247600_v2.0.a1 Prupe.6G247700_v2.0.a1 Prupe.8G100200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0467741 RchiOBHm_Chr6g0263791
rosa_laevigata	RLG00000014312 RLG00000024477
rosa_multiflora	Rmu_sc0001793.1_g000022 Rmu_sc0009383.1_g000005
rosa_roxburghii	Rroxscaffold_6G00413460 Rroxscaffold_7G00203930
rosa_rugosa	Rorug03G0089400 Rorug03G0089500 Rorug06G0006200
rosa_samantha	Rh3AG137900 Rh3BG159200 Rh3CG159100 Rh3DG159600 Rh6AG125600 Rh6BG122100 Rh6CG120400 Rh6DG108200
rosa_wichuraiana	Rw3G013060 Rw6G010930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	622, 815
AccB7I	CCANNNNNTGG	1 cut(s)	723
AccII	CGCG	1 cut(s)	628
AccIII	TCCGGA	1 cut(s)	145
AciI	CCGC	5 cut(s)	173, 448, 626, 684, 701
AclWI	GGATC	3 cut(s)	152, 831, 863
AcsI	RAATTY	1 cut(s)	895
AcyI	GRCGYC	2 cut(s)	641, 816
AfaI	GTAC	4 cut(s)	367, 473, 496, 551
AfiI	CCNNNNNNNGG	7 cut(s)	331, 338, 385, 398, 444, 447, 723
AgsI	TTSAA	1 cut(s)	778
AjiI	CACGTC	1 cut(s)	511
AjnI	CCWGG	1 cut(s)	443
AjuI	GAANNNNNNNTTGG	2 cut(s)	866, 898
AluBI	AGCT	1 cut(s)	853
AluI	AGCT	1 cut(s)	853
Alw21I	GWGCWC	1 cut(s)	462
Alw44I	GTGCAC	1 cut(s)	458
AlwI	GGATC	3 cut(s)	152, 831, 863
Ama87I	CYCGRG	1 cut(s)	393
Aor13HI	TCCGGA	1 cut(s)	145
AoxI	GGCC	8 cut(s)	131, 213, 334, 341, 420, 435, 450, 714
ApaLI	GTGCAC	1 cut(s)	458
ApeKI	GCWGC	4 cut(s)	610, 681, 736, 759
ApoI	RAATTY	1 cut(s)	895
Asp700I	GAANNNNTTC	1 cut(s)	782
AspA2I	CCTAGG	1 cut(s)	653
AspLEI	GCGC	1 cut(s)	818
AspS9I	GGNCC	8 cut(s)	148, 214, 334, 341, 421, 435, 450, 878
AsuC2I	CCSGG	4 cut(s)	152, 333, 338, 419
AsuHPI	GGTGA	4 cut(s)	240, 518, 797, 832
AsuII	TTCGAA	1 cut(s)	899
AvaI	CYCGRG	1 cut(s)	393
AvaII	GGWCC	2 cut(s)	148, 878
AvrII	CCTAGG	1 cut(s)	653
BaeGI	GKGCMC	2 cut(s)	462, 625
BanI	GGYRCC	2 cut(s)	622, 815
BbsI	GAAGAC	2 cut(s)	87, 93
Bbv12I	GWGCWC	1 cut(s)	462
BbvI	GCAGC	4 cut(s)	597, 693, 723, 746
BccI	CCATC	2 cut(s)	133, 725
BceAI	ACGGC	2 cut(s)	172, 228
BciT130I	CCWGG	1 cut(s)	445
BciVI	GTATCC	1 cut(s)	500
BcnI	CCSGG	4 cut(s)	152, 333, 338, 419
BfaI	CTAG	2 cut(s)	654, 740
BfoI	RGCGCY	1 cut(s)	819
BfuI	GTATCC	1 cut(s)	500
BglII	AGATCT	1 cut(s)	52
BisI	GCNGC	4 cut(s)	611, 682, 737, 760
BlnI	CCTAGG	1 cut(s)	653
BlsI	GCNGC	4 cut(s)	612, 683, 738, 761
BmcAI	AGTACT	1 cut(s)	473
Bme1390I	CCNGG	5 cut(s)	152, 333, 338, 419, 445
Bme18I	GGWCC	2 cut(s)	148, 878
BmeT110I	CYCGRG	1 cut(s)	393
BmgBI	CACGTC	1 cut(s)	511
BmgT120I	GGNCC	8 cut(s)	148, 214, 334, 341, 421, 435, 450, 878
BmiI	GGNNCC	6 cut(s)	150, 342, 390, 423, 624, 817
BmrFI	CCNGG	5 cut(s)	152, 333, 338, 419, 445
BmsI	GCATC	2 cut(s)	174, 738
BpiI	GAAGAC	2 cut(s)	87, 93
BpmI	CTGGAG	1 cut(s)	578
Bpu14I	TTCGAA	1 cut(s)	899
BpuEI	CTTGAG	3 cut(s)	488, 788, 869
BpuMI	CCSGG	4 cut(s)	152, 333, 338, 419
BsaHI	GRCGYC	2 cut(s)	641, 816
BsaJI	CCNNGG	8 cut(s)	16, 312, 337, 392, 431, 453, 653, 819
BsaWI	WCCGGW	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	551, 581
Bsc4I	CCNNNNNNNGG	7 cut(s)	331, 338, 385, 398, 444, 447, 723
Bse118I	RCCGGY	2 cut(s)	643, 812
Bse1I	ACTGG	2 cut(s)	508, 728
BseAI	TCCGGA	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	445
BseDI	CCNNGG	8 cut(s)	16, 312, 337, 392, 431, 453, 653, 819
BseGI	GGATG	1 cut(s)	294
BseLI	CCNNNNNNNGG	7 cut(s)	331, 338, 385, 398, 444, 447, 723
BseMII	CTCAG	3 cut(s)	124, 398, 585
BseNI	ACTGG	2 cut(s)	508, 728
BseRI	GAGGAG	2 cut(s)	292, 575
BseSI	GKGCMC	2 cut(s)	462, 625
BseXI	GCAGC	4 cut(s)	597, 693, 723, 746
BsgI	GTGCAG	3 cut(s)	533, 679, 745
Bsh1236I	CGCG	1 cut(s)	628
BshFI	GGCC	8 cut(s)	133, 215, 336, 343, 422, 437, 452, 716
BshNI	GGYRCC	2 cut(s)	622, 815
BsiHKAI	GWGCWC	1 cut(s)	462
BsiHKCI	CYCGRG	1 cut(s)	393
BsiSI	CCGG	7 cut(s)	146, 152, 332, 337, 419, 644, 813
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	7 cut(s)	331, 338, 385, 398, 444, 447, 723
BsmFI	GGGAC	1 cut(s)	401
BsnI	GGCC	8 cut(s)	133, 215, 336, 343, 422, 437, 452, 716
BsoBI	CYCGRG	1 cut(s)	393
Bsp119I	TTCGAA	1 cut(s)	899
Bsp1286I	GDGCHC	2 cut(s)	462, 625
Bsp13I	TCCGGA	1 cut(s)	145
Bsp143I	GATC	7 cut(s)	52, 157, 553, 693, 823, 868, 890
BspACI	CCGC	5 cut(s)	173, 448, 626, 684, 701
BspANI	GGCC	8 cut(s)	133, 215, 336, 343, 422, 437, 452, 716
BspCNI	CTCAG	3 cut(s)	123, 397, 586
BspEI	TCCGGA	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	628
BspLI	GGNNCC	6 cut(s)	150, 342, 390, 423, 624, 817
BspPI	GGATC	3 cut(s)	152, 831, 863
BspT104I	TTCGAA	1 cut(s)	899
BspT107I	GGYRCC	2 cut(s)	622, 815
BsrFI	RCCGGY	2 cut(s)	643, 812
BsrI	ACTGG	2 cut(s)	508, 728
BssAI	RCCGGY	2 cut(s)	643, 812
BssECI	CCNNGG	8 cut(s)	16, 312, 337, 392, 431, 453, 653, 819
BssMI	GATC	7 cut(s)	52, 157, 553, 693, 823, 868, 890
BssNI	GRCGYC	2 cut(s)	641, 816
BssT1I	CCWWGG	4 cut(s)	16, 312, 653, 819
Bst2UI	CCWGG	1 cut(s)	445
Bst4CI	ACNGT	3 cut(s)	122, 415, 457
Bst6I	CTCTTC	1 cut(s)	669
BstACI	GRCGYC	2 cut(s)	641, 816
BstBI	TTCGAA	1 cut(s)	899
BstC8I	GCNNGC	5 cut(s)	99, 450, 521, 662, 764
BstDEI	CTNAG	3 cut(s)	110, 384, 594
BstDSI	CCRYGG	2 cut(s)	431, 453
BstF5I	GGATG	1 cut(s)	294
BstFNI	CGCG	1 cut(s)	628
BstH2I	RGCGCY	1 cut(s)	819
BstHHI	GCGC	1 cut(s)	818
BstKTI	GATC	7 cut(s)	55, 160, 556, 696, 826, 871, 893
BstMBI	GATC	7 cut(s)	52, 157, 553, 693, 823, 868, 890
BstMWI	GCNNNNNNNGC	3 cut(s)	520, 733, 742
BstNI	CCWGG	1 cut(s)	445
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	5 cut(s)	150, 331, 336, 417, 443
BstSLI	GKGCMC	2 cut(s)	462, 625
BstUI	CGCG	1 cut(s)	628
BstV1I	GCAGC	4 cut(s)	597, 693, 723, 746
BstV2I	GAAGAC	2 cut(s)	87, 93
BstX2I	RGATCY	2 cut(s)	52, 157
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	2 cut(s)	52, 157
BsuI	GTATCC	1 cut(s)	500
BsuRI	GGCC	8 cut(s)	133, 215, 336, 343, 422, 437, 452, 716
BtgI	CCRYGG	2 cut(s)	431, 453
BtgZI	GCGATG	1 cut(s)	538
BtrI	CACGTC	1 cut(s)	511
BtsCI	GGATG	1 cut(s)	294
BtsI	GCAGTG	1 cut(s)	521
BtsIMutI	CAGTG	2 cut(s)	501, 521
Cac8I	GCNNGC	5 cut(s)	99, 450, 521, 662, 764
CfoI	GCGC	1 cut(s)	818
Cfr10I	RCCGGY	2 cut(s)	643, 812
Cfr13I	GGNCC	8 cut(s)	148, 214, 334, 341, 421, 435, 450, 878
CseI	GACGC	1 cut(s)	649
Csp6I	GTAC	4 cut(s)	366, 472, 495, 550
CviAII	CATG	5 cut(s)	94, 199, 268, 307, 633
CviQI	GTAC	4 cut(s)	366, 472, 495, 550
DdeI	CTNAG	3 cut(s)	110, 384, 594
DinI	GGCGCC	1 cut(s)	817
DpnI	GATC	7 cut(s)	54, 159, 555, 695, 825, 870, 892
DpnII	GATC	7 cut(s)	52, 157, 553, 693, 823, 868, 890
Eam1104I	CTCTTC	1 cut(s)	669
EarI	CTCTTC	1 cut(s)	669
Eco130I	CCWWGG	4 cut(s)	16, 312, 653, 819
Eco147I	AGGCCT	1 cut(s)	133
Eco47I	GGWCC	2 cut(s)	148, 878
Eco88I	CYCGRG	1 cut(s)	393
EcoO109I	RGGNCCY	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	443
EcoT14I	CCWWGG	4 cut(s)	16, 312, 653, 819
EgeI	GGCGCC	1 cut(s)	817
EheI	GGCGCC	1 cut(s)	817
ErhI	CCWWGG	4 cut(s)	16, 312, 653, 819
FaeI	CATG	5 cut(s)	97, 202, 271, 310, 636
FaiI	YATR	6 cut(s)	95, 200, 269, 308, 634, 698
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	5 cut(s)	93, 198, 267, 306, 632
FauI	CCCGC	2 cut(s)	441, 677
Fnu4HI	GCNGC	4 cut(s)	611, 682, 737, 760
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	4 cut(s)	611, 682, 737, 760
FspBI	CTAG	2 cut(s)	654, 740
GlaI	GCGC	1 cut(s)	817
GluI	GCNGC	4 cut(s)	611, 682, 737, 760
GsuI	CTGGAG	1 cut(s)	578
HaeII	RGCGCY	1 cut(s)	819
HaeIII	GGCC	8 cut(s)	133, 215, 336, 343, 422, 437, 452, 716
HapII	CCGG	7 cut(s)	146, 152, 332, 337, 419, 644, 813
HgaI	GACGC	1 cut(s)	649
HhaI	GCGC	1 cut(s)	818
Hin1I	GRCGYC	2 cut(s)	641, 816
Hin1II	CATG	5 cut(s)	97, 202, 271, 310, 636
Hin6I	GCGC	1 cut(s)	816
HinP1I	GCGC	1 cut(s)	816
HinfI	GANTC	1 cut(s)	21
HpaII	CCGG	7 cut(s)	146, 152, 332, 337, 419, 644, 813
HphI	GGTGA	4 cut(s)	240, 518, 797, 832
Hpy166II	GTNNAC	3 cut(s)	460, 570, 860
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	6 cut(s)	146, 395, 467, 557, 671, 848
Hpy8I	GTNNAC	3 cut(s)	460, 570, 860
Hpy99I	CGWCG	3 cut(s)	141, 375, 643
HpyAV	CCTTC	4 cut(s)	186, 297, 354, 706
HpyCH4III	ACNGT	3 cut(s)	122, 415, 457
HpyCH4IV	ACGT	1 cut(s)	510
HpyCH4V	TGCA	6 cut(s)	202, 460, 514, 519, 660, 762
HpyF10VI	GCNNNNNNNGC	3 cut(s)	520, 733, 742
HpyF3I	CTNAG	3 cut(s)	110, 384, 594
HpySE526I	ACGT	1 cut(s)	510
Hsp92I	GRCGYC	2 cut(s)	641, 816
Hsp92II	CATG	5 cut(s)	97, 202, 271, 310, 636
HspAI	GCGC	1 cut(s)	816
KasI	GGCGCC	1 cut(s)	815
Kpn2I	TCCGGA	1 cut(s)	145
Kzo9I	GATC	7 cut(s)	52, 157, 553, 693, 823, 868, 890
Lsp1109I	GCAGC	4 cut(s)	597, 693, 723, 746
LweI	GCATC	2 cut(s)	174, 738
MaeI	CTAG	2 cut(s)	654, 740
MaeII	ACGT	1 cut(s)	510
MaeIII	GTNAC	1 cut(s)	506
MalI	GATC	7 cut(s)	54, 159, 555, 695, 825, 870, 892
MboI	GATC	7 cut(s)	52, 157, 553, 693, 823, 868, 890
MboII	GAAGA	5 cut(s)	89, 92, 98, 641, 686
MflI	RGATCY	2 cut(s)	52, 157
MhlI	GDGCHC	2 cut(s)	462, 625
MluCI	AATT	2 cut(s)	360, 895
Mly113I	GGCGCC	1 cut(s)	816
MroI	TCCGGA	1 cut(s)	145
MroXI	GAANNNNTTC	1 cut(s)	782
MseI	TTAA	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	684
MspI	CCGG	7 cut(s)	146, 152, 332, 337, 419, 644, 813
MspR9I	CCNGG	5 cut(s)	152, 333, 338, 419, 445
MvaI	CCWGG	1 cut(s)	445
MvnI	CGCG	1 cut(s)	628
MwoI	GCNNNNNNNGC	3 cut(s)	520, 733, 742
NarI	GGCGCC	1 cut(s)	816
NciI	CCSGG	4 cut(s)	152, 333, 338, 419
NdeII	GATC	7 cut(s)	52, 157, 553, 693, 823, 868, 890
NlaIII	CATG	5 cut(s)	97, 202, 271, 310, 636
NlaIV	GGNNCC	6 cut(s)	150, 342, 390, 423, 624, 817
NmuCI	GTSAC	1 cut(s)	506
NspI	RCATGY	1 cut(s)	97
NspV	TTCGAA	1 cut(s)	899
PceI	AGGCCT	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	3 cut(s)	185, 361, 370
PdmI	GAANNNNTTC	1 cut(s)	782
PfeI	GAWTC	1 cut(s)	21
PflFI	GACNNNGTC	1 cut(s)	141
PflMI	CCANNNNNTGG	1 cut(s)	723
PkrI	GCNGC	4 cut(s)	612, 683, 738, 761
PluTI	GGCGCC	1 cut(s)	819
Psp6I	CCWGG	1 cut(s)	443
PspGI	CCWGG	1 cut(s)	443
PspN4I	GGNNCC	6 cut(s)	150, 342, 390, 423, 624, 817
PspPI	GGNCC	8 cut(s)	148, 214, 334, 341, 421, 435, 450, 878
PsuI	RGATCY	2 cut(s)	52, 157
PsyI	GACNNNGTC	1 cut(s)	141
RsaI	GTAC	4 cut(s)	367, 473, 496, 551
RsaNI	GTAC	4 cut(s)	366, 472, 495, 550
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	4 cut(s)	611, 682, 737, 760
Sau3AI	GATC	7 cut(s)	52, 157, 553, 693, 823, 868, 890
Sau96I	GGNCC	8 cut(s)	148, 214, 334, 341, 421, 435, 450, 878
ScaI	AGTACT	1 cut(s)	473
ScrFI	CCNGG	5 cut(s)	152, 333, 338, 419, 445
SduI	GDGCHC	2 cut(s)	462, 625
SetI	ASST	9 cut(s)	238, 289, 390, 513, 659, 845, 855, 883, 908
SfaNI	GCATC	2 cut(s)	174, 738
SfoI	GGCGCC	1 cut(s)	817
SfuI	TTCGAA	1 cut(s)	899
SinI	GGWCC	2 cut(s)	148, 878
SmlI	CTYRAG	3 cut(s)	467, 767, 848
SmoI	CTYRAG	3 cut(s)	467, 767, 848
Sse9I	AATT	2 cut(s)	360, 895
SseBI	AGGCCT	1 cut(s)	133
SsiI	CCGC	5 cut(s)	173, 448, 626, 684, 701
SspDI	GGCGCC	1 cut(s)	815
SspMI	CTAG	2 cut(s)	654, 740
StuI	AGGCCT	1 cut(s)	133
StyD4I	CCNGG	5 cut(s)	150, 331, 336, 417, 443
StyI	CCWWGG	4 cut(s)	16, 312, 653, 819
TaaI	ACNGT	3 cut(s)	122, 415, 457
TaiI	ACGT	1 cut(s)	513
TaqI	TCGA	4 cut(s)	136, 826, 867, 899
TasI	AATT	2 cut(s)	360, 895
TatI	WGTACW	1 cut(s)	471
TfiI	GAWTC	1 cut(s)	21
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	2 cut(s)	508, 521
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	4 cut(s)	610, 681, 736, 759
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	3 cut(s)	17, 187, 621
TspGWI	ACGGA	2 cut(s)	420, 482
TspRI	CASTG	2 cut(s)	508, 521
Tth111I	GACNNNGTC	1 cut(s)	141
Van91I	CCANNNNNTGG	1 cut(s)	723
VneI	GTGCAC	1 cut(s)	458
VpaK11BI	GGWCC	2 cut(s)	148, 878
XapI	RAATTY	1 cut(s)	895
XceI	RCATGY	1 cut(s)	97
XmaJI	CCTAGG	1 cut(s)	653
XmnI	GAANNNNTTC	1 cut(s)	782
XspI	CTAG	2 cut(s)	654, 740
ZrmI	AGTACT	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.