Rh6AG125600

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0004320
Physical Location & Seq
Forward (+)
18818051 .. 18819547
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG125600.1

Sequence Viewer

Length: 1212 bp
ATGGACAACGAGGAAGAAGAAAGGCAGAACAAGAATCTGCAAGAGATGATCAATCATAAACGAAAGAACAGTCAAGAACAAGATCTCAATCACCAAGTCACATCATCTACTAGTTTCCCCGGTGTCACATCATCAACTAGTTTCTCCGGTGAGGAGGAGGAGGAGGAGGAGGACATGCTGGAACTCCGCCTCAATTCTCACCGCCCCTCTAGGCCTCGCCCAAGTGTGCCGCAACCACAGACCCAAATCCCTGTACTGCCAGAGCTTCATCAACTCTCCAACACACACTCTCGCCCAAATCTACTGCCAACACCACAACCAGAGGCTCAAAGCGCTCCATTAAATCATCTTCAACTCTCAAACACACATCCTCTTTACAGAGGTGAACCCTTGCTGCTTGCGCCAGAGCCTCTCCTTTATCCCCTCAATGGCTTTTATCGCCCTAATGGTGGTCAGTCCTCGATTACACCAGTCCAGGCGGCCGCACCTCCACCGCCACCTCCACCTCCACCTCCACGGTCACAACCACCGGTGGTTCTTCATCAAGATGTGAGACCAAGAGCCGTGCAGATGCCACAACCACAGGTGGTTTTTCATCAAGATGTGAGGCCAAGAGCCATGCAGATGCCACCTCTACGGCCACCACCTGTGGGGCCAAGACCACTAGGGATTCGGCCAGTCCGCTCGCGCCGGAACTCGACTCAGGCTCCAGGCCAAGGAAAGAGCGAGACGGTGCCGGCTCAGTTTCCTTGGGCCACCACAAAGCGAGCCACGGTCCACAACCTGAATTACTTGAGGACACATAATATAGTGACCATCACCGGTGACGTACAGTGCAAGCGATGCGAGAAGCAGTACGAGATTGAGTACAATCTGGAGCAGAAATTTATGGAGGTGGGGACTTACATTGTTGAGAACAGGATGAGGATGCATGACCGAGCACCGGATATGTGGAGGGACCCAGTACTTCCGGCTTGCAAGTACTGCGAGCAAGAGAACAGTGCGAGGCCGGTCTTGGCTGACAAAAAGAGGGCGATCAATTGGTTGTTTCTGTTTTTGGGACAGATGCTTGGGTGTTGCACACTCGAACAGTTGAAATATTTCTGTAAGCACACAAAGAATCATCGAACTGGAGCCAAGGACCGGGTTCTTTATCTAACTTATCTGTGTTTGTGCAAACAGCTTGATCCCACTGGGCCTTTTGATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

403

Amino Acids

46.01

Weight (kDa)

8.79

Isoelectric Point (pI)

72.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7086 PF23324 262 - 395 1.3e-65 Domain of unknown function (DUF7086)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 733
AccBSI CCGCTC 1 cut(s) 684
AccII CGCG 1 cut(s) 688
AciI CCGC 7 cut(s) 187, 202, 230, 479, 483, 494, 682
AclWI GGATC 1 cut(s) 1181
AcoI YGGCCR 3 cut(s) 480, 638, 674
AcsI RAATTY 1 cut(s) 884
AfaI GTAC 6 cut(s) 255, 831, 857, 869, 966, 983
AfeI AGCGCT 1 cut(s) 334
AfiI CCNNNNNNNGG 6 cut(s) 428, 449, 650, 716, 943, 1143
AgeI ACCGGT 2 cut(s) 529, 821
AgsI TTSAA 2 cut(s) 353, 1096
AhlI ACTAGT 2 cut(s) 110, 137
AjnI CCWGG 2 cut(s) 474, 709
AluBI AGCT 2 cut(s) 265, 1183
AluI AGCT 2 cut(s) 265, 1183
Alw21I GWGCWC 1 cut(s) 943
Alw26I GTCTC 2 cut(s) 547, 722
AlwI GGATC 1 cut(s) 1181
Aor51HI AGCGCT 1 cut(s) 334
ApeKI GCWGC 1 cut(s) 394
ApoI RAATTY 1 cut(s) 884
ArsI GACNNNNNNTTYG 2 cut(s) 55, 87
AsiGI ACCGGT 2 cut(s) 529, 821
Asp700I GAANNNNTTC 1 cut(s) 1100
AspLEI GCGC 3 cut(s) 335, 403, 690
AspS9I GGNCC 6 cut(s) 653, 753, 775, 958, 1141, 1196
AsuC2I CCSGG 2 cut(s) 120, 1145
AsuHPI GGTGA 6 cut(s) 83, 161, 191, 395, 811, 836
AvaII GGWCC 3 cut(s) 775, 958, 1141
BanI GGYRCC 1 cut(s) 733
Bbv12I GWGCWC 1 cut(s) 943
BbvI GCAGC 1 cut(s) 381
BccI CCATC 1 cut(s) 824
BceAI ACGGC 2 cut(s) 548, 653
BciT130I CCWGG 2 cut(s) 476, 711
BclI TGATCA 1 cut(s) 48
BcnI CCSGG 2 cut(s) 120, 1145
BcoDI GTCTC 2 cut(s) 547, 722
BcuI ACTAGT 2 cut(s) 110, 137
BfaI CTAG 4 cut(s) 111, 138, 210, 665
BfoI RGCGCY 1 cut(s) 336
BglII AGATCT 1 cut(s) 82
BisI GCNGC 4 cut(s) 230, 395, 480, 483
BlsI GCNGC 4 cut(s) 231, 396, 481, 484
BmcAI AGTACT 2 cut(s) 966, 983
Bme1390I CCNGG 4 cut(s) 120, 476, 711, 1145
Bme18I GGWCC 3 cut(s) 775, 958, 1141
BmgT120I GGNCC 6 cut(s) 653, 753, 775, 958, 1141, 1196
BmiI GGNNCC 6 cut(s) 654, 708, 735, 959, 960, 1135
BmrFI CCNGG 4 cut(s) 120, 476, 711, 1145
BmrI ACTGGG 2 cut(s) 956, 1203
BmsI GCATC 5 cut(s) 561, 615, 833, 918, 1056
BmuI ACTGGG 2 cut(s) 956, 1203
BpmI CTGGAG 3 cut(s) 693, 896, 1152
BpuEI CTTGAG 1 cut(s) 814
BpuMI CCSGG 2 cut(s) 120, 1145
BsaBI GATNNNNATC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 547
BsaJI CCNNGG 6 cut(s) 118, 515, 715, 749, 771, 1137
BsaWI WCCGGW 4 cut(s) 146, 529, 821, 943
BsaXI ACNNNNNCTCC 2 cut(s) 691, 721
Bsc4I CCNNNNNNNGG 6 cut(s) 428, 449, 650, 716, 943, 1143
Bse118I RCCGGY 4 cut(s) 529, 736, 821, 1009
Bse1I ACTGG 5 cut(s) 470, 677, 962, 1135, 1198
Bse8I GATNNNNATC 1 cut(s) 87
BseBI CCWGG 2 cut(s) 476, 711
BseDI CCNNGG 6 cut(s) 118, 515, 715, 749, 771, 1137
BseGI GGATG 3 cut(s) 367, 927, 933
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 6 cut(s) 428, 449, 650, 716, 943, 1143
BseMII CTCAG 2 cut(s) 716, 755
BseNI ACTGG 5 cut(s) 470, 677, 962, 1135, 1198
BseRI GAGGAG 6 cut(s) 167, 170, 173, 176, 179, 182
BseX3I CGGCCG 1 cut(s) 480
BseXI GCAGC 1 cut(s) 381
BsgI GTGCAG 1 cut(s) 587
Bsh1236I CGCG 1 cut(s) 688
Bsh1285I CGRYCG 1 cut(s) 483
BshNI GGYRCC 1 cut(s) 733
BshTI ACCGGT 2 cut(s) 529, 821
BsiEI CGRYCG 1 cut(s) 483
BsiHKAI GWGCWC 1 cut(s) 943
BslFI GGGAC 3 cut(s) 913, 971, 1074
BslI CCNNNNNNNGG 6 cut(s) 428, 449, 650, 716, 943, 1143
BsmAI GTCTC 2 cut(s) 547, 722
BsmBI CGTCTC 1 cut(s) 722
BsmFI GGGAC 3 cut(s) 913, 971, 1074
Bso31I GGTCTC 1 cut(s) 547
Bsp1286I GDGCHC 1 cut(s) 943
Bsp143I GATC 4 cut(s) 48, 82, 1035, 1186
BspACI CCGC 7 cut(s) 187, 202, 230, 479, 483, 494, 682
BspCNI CTCAG 2 cut(s) 715, 754
BspFNI CGCG 1 cut(s) 688
BspLI GGNNCC 6 cut(s) 654, 708, 735, 959, 960, 1135
BspPI GGATC 1 cut(s) 1181
BspT107I GGYRCC 1 cut(s) 733
BspTNI GGTCTC 1 cut(s) 547
BsrBI CCGCTC 1 cut(s) 684
BsrFI RCCGGY 4 cut(s) 529, 736, 821, 1009
BsrI ACTGG 5 cut(s) 470, 677, 962, 1135, 1198
BssAI RCCGGY 4 cut(s) 529, 736, 821, 1009
BssECI CCNNGG 6 cut(s) 118, 515, 715, 749, 771, 1137
BssMI GATC 4 cut(s) 48, 82, 1035, 1186
BssT1I CCWWGG 3 cut(s) 715, 749, 1137
Bst2UI CCWGG 2 cut(s) 476, 711
Bst4CI ACNGT 7 cut(s) 71, 519, 733, 775, 834, 1001, 1092
BstAPI GCANNNNNTGC 2 cut(s) 843, 984
BstC8I GCNNGC 7 cut(s) 399, 686, 738, 768, 839, 976, 989
BstDEI CTNAG 2 cut(s) 702, 741
BstDSI CCRYGG 2 cut(s) 515, 771
BstF5I GGATG 3 cut(s) 367, 927, 933
BstFNI CGCG 1 cut(s) 688
BstH2I RGCGCY 1 cut(s) 336
BstHHI GCGC 3 cut(s) 335, 403, 690
BstKTI GATC 4 cut(s) 51, 85, 1038, 1189
BstMAI GTCTC 2 cut(s) 547, 722
BstMBI GATC 4 cut(s) 48, 82, 1035, 1186
BstMCI CGRYCG 1 cut(s) 483
BstMWI GCNNNNNNNGC 5 cut(s) 332, 400, 438, 843, 984
BstNI CCWGG 2 cut(s) 476, 711
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 4 cut(s) 118, 474, 709, 1143
BstUI CGCG 1 cut(s) 688
BstV1I GCAGC 1 cut(s) 381
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BstZI CGGCCG 1 cut(s) 480
BtgI CCRYGG 2 cut(s) 515, 771
BtgZI GCGATG 1 cut(s) 856
BtsCI GGATG 3 cut(s) 367, 927, 933
BtsIMutI CAGTG 3 cut(s) 839, 1006, 1191
Cac8I GCNNGC 7 cut(s) 399, 686, 738, 768, 839, 976, 989
CciNI GCGGCCGC 1 cut(s) 480
CfoI GCGC 3 cut(s) 335, 403, 690
Cfr10I RCCGGY 4 cut(s) 529, 736, 821, 1009
Cfr13I GGNCC 6 cut(s) 653, 753, 775, 958, 1141, 1196
Csp6I GTAC 6 cut(s) 254, 830, 856, 868, 965, 982
CspAI ACCGGT 2 cut(s) 529, 821
CviAII CATG 3 cut(s) 175, 619, 932
CviQI GTAC 6 cut(s) 254, 830, 856, 868, 965, 982
DdeI CTNAG 2 cut(s) 702, 741
DpnI GATC 4 cut(s) 50, 84, 1037, 1188
DpnII GATC 4 cut(s) 48, 82, 1035, 1186
EaeI YGGCCR 3 cut(s) 480, 638, 674
EagI CGGCCG 1 cut(s) 480
EciI GGCGGA 1 cut(s) 176
EclXI CGGCCG 1 cut(s) 480
Eco130I CCWWGG 3 cut(s) 715, 749, 1137
Eco147I AGGCCT 1 cut(s) 214
Eco31I GGTCTC 1 cut(s) 547
Eco47I GGWCC 3 cut(s) 775, 958, 1141
Eco47III AGCGCT 1 cut(s) 334
Eco52I CGGCCG 1 cut(s) 480
EcoO109I RGGNCCY 1 cut(s) 958
EcoRII CCWGG 2 cut(s) 474, 709
EcoT14I CCWWGG 3 cut(s) 715, 749, 1137
EcoT22I ATGCAT 1 cut(s) 933
ErhI CCWWGG 3 cut(s) 715, 749, 1137
Esp3I CGTCTC 1 cut(s) 722
FaeI CATG 3 cut(s) 178, 622, 935
FaiI YATR 8 cut(s) 57, 176, 620, 804, 809, 890, 933, 950
FaqI GGGAC 3 cut(s) 913, 971, 1074
FatI CATG 3 cut(s) 174, 618, 931
FbaI TGATCA 1 cut(s) 48
Fnu4HI GCNGC 4 cut(s) 230, 395, 480, 483
FokI GGATG 3 cut(s) 354, 934, 940
Fsp4HI GCNGC 4 cut(s) 230, 395, 480, 483
FspBI CTAG 4 cut(s) 111, 138, 210, 665
GlaI GCGC 3 cut(s) 334, 402, 689
GluI GCNGC 4 cut(s) 230, 395, 480, 483
GsuI CTGGAG 3 cut(s) 693, 896, 1152
HaeII RGCGCY 1 cut(s) 336
HhaI GCGC 3 cut(s) 335, 403, 690
Hin1II CATG 3 cut(s) 178, 622, 935
Hin6I GCGC 3 cut(s) 333, 401, 688
HinP1I GCGC 3 cut(s) 333, 401, 688
HinfI GANTC 4 cut(s) 34, 670, 700, 1120
HphI GGTGA 6 cut(s) 83, 161, 191, 395, 811, 836
Hpy166II GTNNAC 2 cut(s) 386, 778
Hpy188III TCNNGA 4 cut(s) 74, 545, 599, 875
Hpy8I GTNNAC 2 cut(s) 386, 778
HpyCH4III ACNGT 7 cut(s) 71, 519, 733, 775, 834, 1001, 1092
HpyCH4IV ACGT 1 cut(s) 828
HpyCH4V TGCA 8 cut(s) 40, 568, 622, 837, 931, 978, 1080, 1176
HpyF10VI GCNNNNNNNGC 5 cut(s) 332, 400, 438, 843, 984
HpyF3I CTNAG 2 cut(s) 702, 741
HpySE526I ACGT 1 cut(s) 828
Hsp92II CATG 3 cut(s) 178, 622, 935
HspAI GCGC 3 cut(s) 333, 401, 688
KflI GGGWCCC 1 cut(s) 958
KroI GCCGGC 1 cut(s) 736
KroNI GCCGGC 1 cut(s) 738
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 4 cut(s) 48, 82, 1035, 1186
LmnI GCTCC 4 cut(s) 340, 712, 877, 1133
Lsp1109I GCAGC 1 cut(s) 381
LweI GCATC 5 cut(s) 561, 615, 833, 918, 1056
MaeI CTAG 4 cut(s) 111, 138, 210, 665
MaeII ACGT 1 cut(s) 828
MaeIII GTNAC 5 cut(s) 97, 124, 519, 811, 824
MalI GATC 4 cut(s) 50, 84, 1037, 1188
MbiI CCGCTC 1 cut(s) 684
MboI GATC 4 cut(s) 48, 82, 1035, 1186
MboII GAAGA 4 cut(s) 26, 29, 341, 530
MfeI CAATTG 1 cut(s) 1039
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 943
MluCI AATT 4 cut(s) 193, 787, 884, 1039
MlyI GAGTC 1 cut(s) 694
MmeI TCCRAC 1 cut(s) 303
Mph1103I ATGCAT 1 cut(s) 933
MroNI GCCGGC 1 cut(s) 736
MroXI GAANNNNTTC 1 cut(s) 1100
MseI TTAA 1 cut(s) 341
MslI CAYNNNNRTG 3 cut(s) 546, 600, 623
MspR9I CCNGG 4 cut(s) 120, 476, 711, 1145
MunI CAATTG 1 cut(s) 1039
MvaI CCWGG 2 cut(s) 476, 711
MvnI CGCG 1 cut(s) 688
MwoI GCNNNNNNNGC 5 cut(s) 332, 400, 438, 843, 984
NaeI GCCGGC 1 cut(s) 738
NciI CCSGG 2 cut(s) 120, 1145
NdeII GATC 4 cut(s) 48, 82, 1035, 1186
NgoMIV GCCGGC 1 cut(s) 736
NlaIII CATG 3 cut(s) 178, 622, 935
NlaIV GGNNCC 6 cut(s) 654, 708, 735, 959, 960, 1135
NmuCI GTSAC 5 cut(s) 97, 124, 519, 811, 824
NotI GCGGCCGC 1 cut(s) 480
NsiI ATGCAT 1 cut(s) 933
NspI RCATGY 1 cut(s) 178
PceI AGGCCT 1 cut(s) 214
PdiI GCCGGC 1 cut(s) 738
PdmI GAANNNNTTC 1 cut(s) 1100
PfeI GAWTC 3 cut(s) 34, 670, 1120
PinAI ACCGGT 2 cut(s) 529, 821
PkrI GCNGC 4 cut(s) 231, 396, 481, 484
PleI GAGTC 1 cut(s) 694
PpsI GAGTC 1 cut(s) 694
PpuMI RGGWCCY 1 cut(s) 958
Psp5II RGGWCCY 1 cut(s) 958
Psp6I CCWGG 2 cut(s) 474, 709
PspGI CCWGG 2 cut(s) 474, 709
PspN4I GGNNCC 6 cut(s) 654, 708, 735, 959, 960, 1135
PspPI GGNCC 6 cut(s) 653, 753, 775, 958, 1141, 1196
PspPPI RGGWCCY 1 cut(s) 958
PsuI RGATCY 1 cut(s) 82
RsaI GTAC 6 cut(s) 255, 831, 857, 869, 966, 983
RsaNI GTAC 6 cut(s) 254, 830, 856, 868, 965, 982
RseI CAYNNNNRTG 3 cut(s) 546, 600, 623
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 4 cut(s) 230, 395, 480, 483
Sau3AI GATC 4 cut(s) 48, 82, 1035, 1186
Sau96I GGNCC 6 cut(s) 653, 753, 775, 958, 1141, 1196
ScaI AGTACT 2 cut(s) 966, 983
SchI GAGTC 1 cut(s) 694
ScrFI CCNGG 4 cut(s) 120, 476, 711, 1145
SduI GDGCHC 1 cut(s) 943
SfaNI GCATC 5 cut(s) 561, 615, 833, 918, 1056
SgrAI CRCCGGYG 2 cut(s) 529, 821
SinI GGWCC 3 cut(s) 775, 958, 1141
SmiMI CAYNNNNRTG 3 cut(s) 546, 600, 623
SmlI CTYRAG 1 cut(s) 793
SmoI CTYRAG 1 cut(s) 793
SpeI ACTAGT 2 cut(s) 110, 137
Sse9I AATT 4 cut(s) 193, 787, 884, 1039
SseBI AGGCCT 1 cut(s) 214
SsiI CCGC 7 cut(s) 187, 202, 230, 479, 483, 494, 682
SspI AATATT 1 cut(s) 1100
SspMI CTAG 4 cut(s) 111, 138, 210, 665
StuI AGGCCT 1 cut(s) 214
StyD4I CCNGG 4 cut(s) 118, 474, 709, 1143
StyI CCWWGG 3 cut(s) 715, 749, 1137
TaaI ACNGT 7 cut(s) 71, 519, 733, 775, 834, 1001, 1092
TaiI ACGT 1 cut(s) 831
TaqI TCGA 4 cut(s) 461, 698, 1086, 1126
TaqII GACCGA 1 cut(s) 951
TasI AATT 4 cut(s) 193, 787, 884, 1039
TatI WGTACW 4 cut(s) 253, 867, 964, 981
TauI GCSGC 3 cut(s) 232, 482, 485
TfiI GAWTC 3 cut(s) 34, 670, 1120
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TscAI CASTG 3 cut(s) 839, 1006, 1198
TseFI GTSAC 5 cut(s) 97, 124, 519, 811, 824
TseI GCWGC 1 cut(s) 394
Tsp45I GTSAC 5 cut(s) 97, 124, 519, 811, 824
TspDTI ATGAA 3 cut(s) 257, 530, 584
TspRI CASTG 3 cut(s) 839, 1006, 1198
VpaK11BI GGWCC 3 cut(s) 775, 958, 1141
XapI RAATTY 1 cut(s) 884
XceI RCATGY 1 cut(s) 178
XmnI GAANNNNTTC 1 cut(s) 1100
XspI CTAG 4 cut(s) 111, 138, 210, 665
ZrmI AGTACT 2 cut(s) 966, 983
Zsp2I ATGCAT 1 cut(s) 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.