Rroxscaffold_7G00203930

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0004320
Physical Location & Seq
Reverse (-)
52979107 .. 52980264
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00203930.1

Sequence Viewer

Length: 1158 bp
ATGATCAACCATAAACGAAAGAACAGTCAAGAACAAGATCTCAATCACCCAGTCACATCATCTACTAGTTTCCCCGGTGTCACATCATCAACTAGTTTCTCTGGTGAGGAGGAGGAGGACATGCTGGAACTCCGCCTCAATTCTCACCGCCCCTCTAGGCCTCGCCCAAGTGTGCCGCAACCACAGACCCAAATCCCTGTACTGCCAGAGCTTCATCAACTCTCCAACACACACTCTAGCCCAAATCTACTGCCAACACCACAACCAGAGGCTCAAAGCGCTCCATCAAATCATGTTCAACTCTCAAACACACATCCTCTTTACAGAGGTGAACCCTTGCCGCTTGCGCCAGAGCCTCTCCTTTATCCCCTCAATGGCTTTTATCGCCCTAATGGCGGTCAGTCCTCGATTACACCAGTCCAGGCGGCCGCACCTCCACCGCCACCTCCACCTCCACCTCCACGGTCACAACCACCGTTGGTTCTTCATCAAGATGTGAGGCCAAGAGCCGTGCAAATGCCACAACCACAGGTGGTTTTTCATCAAGATGTGAGGCCAAGAGCCATGCAGATGCCACCTCTACGGCCACCACCTGTGGGGCCAAGACCACTAGGGATTCGGCCCGTCCGCGCGCGCCGGAACTCTACTCAGGCTCCAGGCCAAGGAAAGAGCGAGACGGTGCCGGCTCCGTTTCCTTGGGCCACCACAAAGCGAGCCACGATCCACAACCTGAATTACTTGAGGACACATAATATAGTGACCATCACCGGTGACGTACAGTGCAAGCGATGCGAGAAGCAGTACGAGATTGAGTACAATCTGGAGCAGAAATTTATGGAGGTGGGGACTTACATTGTTGAGAACAGGATGAGGATGCATGACCGAGCACCGGATATGTGGAGGGACCCAGTACTTCCGGCTTGCAAGTACTGCGAGCAAGAGAACAGTGCGAGGCCGGTCTTGGCTGACAAAAAGAGGGCGATCAATTGGTTGTTTCTGTTTTTGGGACAGATGCTTGGGTGTTGCACACTCGAACAGTTGAAATATTTCTGTAAGCACACAAAGAATCATCGAACTGGAGCCAAGGACCGGGTTCTTTATCTAACTTATCTGTGTTTGTGCAAACAGCTTGATCCCACTGGGCCTTTTGATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

385

Amino Acids

43.56

Weight (kDa)

9.35

Isoelectric Point (pI)

68.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7086 PF23324 244 - 377 1.2e-65 Domain of unknown function (DUF7086)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 679
AccII CGCG 3 cut(s) 630, 632, 634
AciI CCGC 9 cut(s) 133, 148, 176, 341, 396, 425, 429, 440, 628
AclWI GGATC 2 cut(s) 715, 1127
AcoI YGGCCR 2 cut(s) 426, 584
AcsI RAATTY 1 cut(s) 830
AfaI GTAC 6 cut(s) 201, 777, 803, 815, 912, 929
AfeI AGCGCT 1 cut(s) 280
AfiI CCNNNNNNNGG 6 cut(s) 374, 395, 596, 662, 889, 1089
AgeI ACCGGT 1 cut(s) 767
AgsI TTSAA 2 cut(s) 299, 1042
AhlI ACTAGT 2 cut(s) 65, 92
AjnI CCWGG 2 cut(s) 420, 655
AluBI AGCT 2 cut(s) 211, 1129
AluI AGCT 2 cut(s) 211, 1129
Alw21I GWGCWC 1 cut(s) 889
Alw26I GTCTC 1 cut(s) 668
AlwI GGATC 2 cut(s) 715, 1127
Aor51HI AGCGCT 1 cut(s) 280
ApoI RAATTY 1 cut(s) 830
ArsI GACNNNNNNTTYG 2 cut(s) 10, 42
AsiGI ACCGGT 1 cut(s) 767
Asp700I GAANNNNTTC 1 cut(s) 1046
AspLEI GCGC 5 cut(s) 281, 349, 632, 634, 636
AspS9I GGNCC 6 cut(s) 599, 621, 699, 904, 1087, 1142
AsuC2I CCSGG 2 cut(s) 75, 1091
AsuHPI GGTGA 6 cut(s) 38, 116, 137, 341, 757, 782
AvaII GGWCC 2 cut(s) 904, 1087
BanI GGYRCC 1 cut(s) 679
Bbv12I GWGCWC 1 cut(s) 889
BccI CCATC 2 cut(s) 292, 770
BceAI ACGGC 2 cut(s) 494, 599
BciT130I CCWGG 2 cut(s) 422, 657
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 2 cut(s) 75, 1091
BcoDI GTCTC 1 cut(s) 668
BcuI ACTAGT 2 cut(s) 65, 92
BfaI CTAG 5 cut(s) 66, 93, 156, 237, 611
BfoI RGCGCY 1 cut(s) 282
BglI GCCNNNNNGGC 1 cut(s) 393
BglII AGATCT 1 cut(s) 37
BisI GCNGC 4 cut(s) 176, 341, 426, 429
BlsI GCNGC 4 cut(s) 177, 342, 427, 430
BmcAI AGTACT 2 cut(s) 912, 929
Bme1390I CCNGG 4 cut(s) 75, 422, 657, 1091
Bme18I GGWCC 2 cut(s) 904, 1087
BmgT120I GGNCC 6 cut(s) 599, 621, 699, 904, 1087, 1142
BmiI GGNNCC 7 cut(s) 600, 654, 681, 687, 905, 906, 1081
BmrFI CCNGG 4 cut(s) 75, 422, 657, 1091
BmrI ACTGGG 3 cut(s) 44, 902, 1149
BmsI GCATC 4 cut(s) 561, 779, 864, 1002
BmuI ACTGGG 3 cut(s) 44, 902, 1149
BpmI CTGGAG 3 cut(s) 639, 842, 1098
BpuEI CTTGAG 1 cut(s) 760
BpuMI CCSGG 2 cut(s) 75, 1091
BsaBI GATNNNNATC 1 cut(s) 42
BsaJI CCNNGG 5 cut(s) 73, 461, 661, 695, 1083
BsaWI WCCGGW 2 cut(s) 767, 889
BsaXI ACNNNNNCTCC 2 cut(s) 637, 667
Bsc4I CCNNNNNNNGG 6 cut(s) 374, 395, 596, 662, 889, 1089
Bse118I RCCGGY 3 cut(s) 682, 767, 955
Bse1I ACTGG 5 cut(s) 50, 416, 908, 1081, 1144
Bse8I GATNNNNATC 1 cut(s) 42
BseBI CCWGG 2 cut(s) 422, 657
BseDI CCNNGG 5 cut(s) 73, 461, 661, 695, 1083
BseGI GGATG 3 cut(s) 313, 873, 879
BseJI GATNNNNATC 1 cut(s) 42
BseLI CCNNNNNNNGG 6 cut(s) 374, 395, 596, 662, 889, 1089
BseMII CTCAG 1 cut(s) 662
BseNI ACTGG 5 cut(s) 50, 416, 908, 1081, 1144
BsePI GCGCGC 2 cut(s) 630, 632
BseRI GAGGAG 3 cut(s) 122, 125, 128
BseX3I CGGCCG 1 cut(s) 426
Bsh1236I CGCG 3 cut(s) 630, 632, 634
Bsh1285I CGRYCG 1 cut(s) 429
BshNI GGYRCC 1 cut(s) 679
BshTI ACCGGT 1 cut(s) 767
BsiEI CGRYCG 1 cut(s) 429
BsiHKAI GWGCWC 1 cut(s) 889
BsiSI CCGG 8 cut(s) 75, 637, 683, 768, 890, 917, 956, 1090
BslFI GGGAC 3 cut(s) 859, 917, 1020
BslI CCNNNNNNNGG 6 cut(s) 374, 395, 596, 662, 889, 1089
BsmAI GTCTC 1 cut(s) 668
BsmBI CGTCTC 1 cut(s) 668
BsmFI GGGAC 3 cut(s) 859, 917, 1020
Bsp1286I GDGCHC 1 cut(s) 889
Bsp143I GATC 5 cut(s) 3, 37, 720, 981, 1132
BspACI CCGC 9 cut(s) 133, 148, 176, 341, 396, 425, 429, 440, 628
BspCNI CTCAG 1 cut(s) 661
BspFNI CGCG 3 cut(s) 630, 632, 634
BspLI GGNNCC 7 cut(s) 600, 654, 681, 687, 905, 906, 1081
BspPI GGATC 2 cut(s) 715, 1127
BspT107I GGYRCC 1 cut(s) 679
BsrFI RCCGGY 3 cut(s) 682, 767, 955
BsrI ACTGG 5 cut(s) 50, 416, 908, 1081, 1144
BssAI RCCGGY 3 cut(s) 682, 767, 955
BssECI CCNNGG 5 cut(s) 73, 461, 661, 695, 1083
BssHII GCGCGC 2 cut(s) 630, 632
BssMI GATC 5 cut(s) 3, 37, 720, 981, 1132
BssT1I CCWWGG 3 cut(s) 661, 695, 1083
Bst2UI CCWGG 2 cut(s) 422, 657
Bst4CI ACNGT 7 cut(s) 26, 465, 477, 679, 780, 947, 1038
BstAPI GCANNNNNTGC 2 cut(s) 789, 930
BstC8I GCNNGC 8 cut(s) 345, 632, 634, 684, 714, 785, 922, 935
BstDEI CTNAG 1 cut(s) 648
BstDSI CCRYGG 1 cut(s) 461
BstF5I GGATG 3 cut(s) 313, 873, 879
BstFNI CGCG 3 cut(s) 630, 632, 634
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 5 cut(s) 281, 349, 632, 634, 636
BstKTI GATC 5 cut(s) 6, 40, 723, 984, 1135
BstMAI GTCTC 1 cut(s) 668
BstMBI GATC 5 cut(s) 3, 37, 720, 981, 1132
BstMCI CGRYCG 1 cut(s) 429
BstMWI GCNNNNNNNGC 6 cut(s) 278, 346, 384, 393, 789, 930
BstNI CCWGG 2 cut(s) 422, 657
BstNSI RCATGY 1 cut(s) 124
BstSCI CCNGG 4 cut(s) 73, 420, 655, 1089
BstUI CGCG 3 cut(s) 630, 632, 634
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BstZI CGGCCG 1 cut(s) 426
BtgI CCRYGG 1 cut(s) 461
BtgZI GCGATG 1 cut(s) 802
BtsCI GGATG 3 cut(s) 313, 873, 879
BtsIMutI CAGTG 3 cut(s) 785, 952, 1137
Cac8I GCNNGC 8 cut(s) 345, 632, 634, 684, 714, 785, 922, 935
CciNI GCGGCCGC 1 cut(s) 426
CfoI GCGC 5 cut(s) 281, 349, 632, 634, 636
Cfr10I RCCGGY 3 cut(s) 682, 767, 955
Cfr13I GGNCC 6 cut(s) 599, 621, 699, 904, 1087, 1142
Csp6I GTAC 6 cut(s) 200, 776, 802, 814, 911, 928
CspAI ACCGGT 1 cut(s) 767
CviAII CATG 4 cut(s) 121, 293, 565, 878
CviQI GTAC 6 cut(s) 200, 776, 802, 814, 911, 928
DdeI CTNAG 1 cut(s) 648
DpnI GATC 5 cut(s) 5, 39, 722, 983, 1134
DpnII GATC 5 cut(s) 3, 37, 720, 981, 1132
EaeI YGGCCR 2 cut(s) 426, 584
EagI CGGCCG 1 cut(s) 426
EciI GGCGGA 1 cut(s) 122
EclXI CGGCCG 1 cut(s) 426
Eco130I CCWWGG 3 cut(s) 661, 695, 1083
Eco147I AGGCCT 1 cut(s) 160
Eco47I GGWCC 2 cut(s) 904, 1087
Eco47III AGCGCT 1 cut(s) 280
Eco52I CGGCCG 1 cut(s) 426
EcoO109I RGGNCCY 1 cut(s) 904
EcoRII CCWGG 2 cut(s) 420, 655
EcoT14I CCWWGG 3 cut(s) 661, 695, 1083
EcoT22I ATGCAT 1 cut(s) 879
ErhI CCWWGG 3 cut(s) 661, 695, 1083
Esp3I CGTCTC 1 cut(s) 668
FaeI CATG 4 cut(s) 124, 296, 568, 881
FaiI YATR 9 cut(s) 12, 122, 294, 566, 750, 755, 836, 879, 896
FaqI GGGAC 3 cut(s) 859, 917, 1020
FatI CATG 4 cut(s) 120, 292, 564, 877
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 4 cut(s) 176, 341, 426, 429
FokI GGATG 3 cut(s) 300, 880, 886
Fsp4HI GCNGC 4 cut(s) 176, 341, 426, 429
FspBI CTAG 5 cut(s) 66, 93, 156, 237, 611
GlaI GCGC 5 cut(s) 280, 348, 631, 633, 635
GluI GCNGC 4 cut(s) 176, 341, 426, 429
GsuI CTGGAG 3 cut(s) 639, 842, 1098
HaeII RGCGCY 1 cut(s) 282
HapII CCGG 8 cut(s) 75, 637, 683, 768, 890, 917, 956, 1090
HhaI GCGC 5 cut(s) 281, 349, 632, 634, 636
Hin1II CATG 4 cut(s) 124, 296, 568, 881
Hin6I GCGC 5 cut(s) 279, 347, 630, 632, 634
HinP1I GCGC 5 cut(s) 279, 347, 630, 632, 634
HinfI GANTC 2 cut(s) 616, 1066
HpaII CCGG 8 cut(s) 75, 637, 683, 768, 890, 917, 956, 1090
HphI GGTGA 6 cut(s) 38, 116, 137, 341, 757, 782
Hpy166II GTNNAC 1 cut(s) 332
Hpy188III TCNNGA 4 cut(s) 29, 491, 545, 821
Hpy8I GTNNAC 1 cut(s) 332
HpyCH4III ACNGT 7 cut(s) 26, 465, 477, 679, 780, 947, 1038
HpyCH4IV ACGT 1 cut(s) 774
HpyCH4V TGCA 7 cut(s) 514, 568, 783, 877, 924, 1026, 1122
HpyF10VI GCNNNNNNNGC 6 cut(s) 278, 346, 384, 393, 789, 930
HpyF3I CTNAG 1 cut(s) 648
HpySE526I ACGT 1 cut(s) 774
Hsp92II CATG 4 cut(s) 124, 296, 568, 881
HspAI GCGC 5 cut(s) 279, 347, 630, 632, 634
KflI GGGWCCC 1 cut(s) 904
KroI GCCGGC 1 cut(s) 682
KroNI GCCGGC 1 cut(s) 684
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 5 cut(s) 3, 37, 720, 981, 1132
LmnI GCTCC 5 cut(s) 286, 658, 691, 823, 1079
LweI GCATC 4 cut(s) 561, 779, 864, 1002
MaeI CTAG 5 cut(s) 66, 93, 156, 237, 611
MaeII ACGT 1 cut(s) 774
MaeIII GTNAC 5 cut(s) 52, 79, 465, 757, 770
MalI GATC 5 cut(s) 5, 39, 722, 983, 1134
MauBI CGCGCGCG 1 cut(s) 630
MboI GATC 5 cut(s) 3, 37, 720, 981, 1132
MboII GAAGA 1 cut(s) 476
MfeI CAATTG 1 cut(s) 985
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 889
MluCI AATT 4 cut(s) 139, 733, 830, 985
MmeI TCCRAC 1 cut(s) 249
Mph1103I ATGCAT 1 cut(s) 879
MroNI GCCGGC 1 cut(s) 682
MroXI GAANNNNTTC 1 cut(s) 1046
MslI CAYNNNNRTG 3 cut(s) 492, 546, 569
MspI CCGG 8 cut(s) 75, 637, 683, 768, 890, 917, 956, 1090
MspR9I CCNGG 4 cut(s) 75, 422, 657, 1091
MunI CAATTG 1 cut(s) 985
MvaI CCWGG 2 cut(s) 422, 657
MvnI CGCG 3 cut(s) 630, 632, 634
MwoI GCNNNNNNNGC 6 cut(s) 278, 346, 384, 393, 789, 930
NaeI GCCGGC 1 cut(s) 684
NciI CCSGG 2 cut(s) 75, 1091
NdeII GATC 5 cut(s) 3, 37, 720, 981, 1132
NgoMIV GCCGGC 1 cut(s) 682
NlaIII CATG 4 cut(s) 124, 296, 568, 881
NlaIV GGNNCC 7 cut(s) 600, 654, 681, 687, 905, 906, 1081
NmuCI GTSAC 5 cut(s) 52, 79, 465, 757, 770
NotI GCGGCCGC 1 cut(s) 426
NsiI ATGCAT 1 cut(s) 879
NspI RCATGY 1 cut(s) 124
PauI GCGCGC 2 cut(s) 630, 632
PceI AGGCCT 1 cut(s) 160
PdiI GCCGGC 1 cut(s) 684
PdmI GAANNNNTTC 1 cut(s) 1046
PfeI GAWTC 2 cut(s) 616, 1066
PinAI ACCGGT 1 cut(s) 767
PkrI GCNGC 4 cut(s) 177, 342, 427, 430
PpuMI RGGWCCY 1 cut(s) 904
Psp5II RGGWCCY 1 cut(s) 904
Psp6I CCWGG 2 cut(s) 420, 655
PspGI CCWGG 2 cut(s) 420, 655
PspN4I GGNNCC 7 cut(s) 600, 654, 681, 687, 905, 906, 1081
PspPI GGNCC 6 cut(s) 599, 621, 699, 904, 1087, 1142
PspPPI RGGWCCY 1 cut(s) 904
PsuI RGATCY 1 cut(s) 37
PteI GCGCGC 2 cut(s) 630, 632
RsaI GTAC 6 cut(s) 201, 777, 803, 815, 912, 929
RsaNI GTAC 6 cut(s) 200, 776, 802, 814, 911, 928
RseI CAYNNNNRTG 3 cut(s) 492, 546, 569
SatI GCNGC 4 cut(s) 176, 341, 426, 429
Sau3AI GATC 5 cut(s) 3, 37, 720, 981, 1132
Sau96I GGNCC 6 cut(s) 599, 621, 699, 904, 1087, 1142
ScaI AGTACT 2 cut(s) 912, 929
ScrFI CCNGG 4 cut(s) 75, 422, 657, 1091
SduI GDGCHC 1 cut(s) 889
SfaNI GCATC 4 cut(s) 561, 779, 864, 1002
SgrAI CRCCGGYG 1 cut(s) 767
SinI GGWCC 2 cut(s) 904, 1087
SmiMI CAYNNNNRTG 3 cut(s) 492, 546, 569
SmlI CTYRAG 1 cut(s) 739
SmoI CTYRAG 1 cut(s) 739
SpeI ACTAGT 2 cut(s) 65, 92
Sse9I AATT 4 cut(s) 139, 733, 830, 985
SseBI AGGCCT 1 cut(s) 160
SsiI CCGC 9 cut(s) 133, 148, 176, 341, 396, 425, 429, 440, 628
SspI AATATT 1 cut(s) 1046
SspMI CTAG 5 cut(s) 66, 93, 156, 237, 611
StuI AGGCCT 1 cut(s) 160
StyD4I CCNGG 4 cut(s) 73, 420, 655, 1089
StyI CCWWGG 3 cut(s) 661, 695, 1083
TaaI ACNGT 7 cut(s) 26, 465, 477, 679, 780, 947, 1038
TaiI ACGT 1 cut(s) 777
TaqI TCGA 3 cut(s) 407, 1032, 1072
TaqII GACCGA 1 cut(s) 897
TasI AATT 4 cut(s) 139, 733, 830, 985
TatI WGTACW 4 cut(s) 199, 813, 910, 927
TauI GCSGC 4 cut(s) 178, 343, 428, 431
TfiI GAWTC 2 cut(s) 616, 1066
TscAI CASTG 3 cut(s) 785, 952, 1144
TseFI GTSAC 5 cut(s) 52, 79, 465, 757, 770
Tsp45I GTSAC 5 cut(s) 52, 79, 465, 757, 770
TspDTI ATGAA 3 cut(s) 203, 476, 530
TspGWI ACGGA 1 cut(s) 678
TspRI CASTG 3 cut(s) 785, 952, 1144
VpaK11BI GGWCC 2 cut(s) 904, 1087
XapI RAATTY 1 cut(s) 830
XceI RCATGY 1 cut(s) 124
XmnI GAANNNNTTC 1 cut(s) 1046
XspI CTAG 5 cut(s) 66, 93, 156, 237, 611
ZrmI AGTACT 2 cut(s) 912, 929
Zsp2I ATGCAT 1 cut(s) 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.