RchiOBHm_Chr6g0263791

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004320
Physical Location & Seq
Forward (+)
18657171 .. 18658208
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23658

Sequence Viewer

Length: 1038 bp
ATGCTGGAACTCCGCCTCAATTCTCACCGCCCCTCTAGGCCTCGCCCAAGTGTGCCGCAACCACAGACCCAAATCCCTGTACTGCCAGAGCTTCATCAACTCTCCAACACACACTCTCGCCCAAATCTACTGCCAACACCACAACCAGAGGCTCAAAGCGCTCCATCAAATCATCTTCAACGCTCAAACACACATCCTCTTTACAGAGGTGAACCCTTGCTGCTTGCGCCAGAGCCTCTCCTTTATCCCCTCAATGGCTTTTATCGCCCTAATGGTGGTCAGTCCTCGATTACACCAGTCCAGGCGGCCGCACCTCCACCGCCACCTCCACCTCCACCTCCACGGTCACAACCACCGGTGGTTCTTCATCAAGATGTGAGGCCAAGAGCCGTGCAGATGCCACAACCACAGGTGGTTTTTCATCAAGATGTGAGGCCAAGAGCCATGCAGATGCCACCTCTACGGCCACCACCTGTGGGGCCAAGACCACTAGGGATTCGGCCAGTCCGCGCGCGCCGGAACTCGACTCAGGCTCCAGGCCAAGGAAAGAGCGAGACGGTGCAGGCTCCGTTTCCTTGGGCCACCACAAAGCGAGCCACGGTCCACAACCTGAATTACTTGAGGACACATAATATAGTGACCATCACCGGTGACGTACAGTGCAAGCGATGCGAGAAGCAGTACGAGATTGAGTACAATCTGGAGCAGAAATTTTTGGAGGTGGGAACTTACATTGTTGAGAACAGGATGAGGATGCATGACCGAGCACCGGATATGTGGAGGGACCCAGTACTTCCGGCTTGCAAGTACTGCGAGCAAGAGAACAGTGCGAGGCCGGTCTTGGCTGACAAAAAGAGGGCGATTAATTGGTTGTTTCTGTTTTTGGGACAGATGCTTGGGTGTTGCACACTCGAACAGTTGAAATATTTCTGTAAGCACACAAAGAATCATCGAACTGGAGCCAAGGACCGGGTTCTTTATCTAACTTATCTGTGTTTGTGCAAACAGCTTGATCCCACTGGGCCTTTTGATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

345

Amino Acids

39.27

Weight (kDa)

9.79

Isoelectric Point (pI)

67.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7086 PF23324 204 - 337 1.8e-65 Domain of unknown function (DUF7086)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 510, 512, 514
AciI CCGC 7 cut(s) 13, 28, 56, 305, 309, 320, 508
AclWI GGATC 1 cut(s) 1007
AcoI YGGCCR 3 cut(s) 306, 464, 500
AcsI RAATTY 1 cut(s) 710
AfaI GTAC 6 cut(s) 81, 657, 683, 695, 792, 809
AfeI AGCGCT 1 cut(s) 160
AfiI CCNNNNNNNGG 6 cut(s) 254, 275, 476, 542, 769, 969
AgeI ACCGGT 2 cut(s) 355, 647
AgsI TTSAA 2 cut(s) 179, 922
AjnI CCWGG 2 cut(s) 300, 535
AluBI AGCT 2 cut(s) 91, 1009
AluI AGCT 2 cut(s) 91, 1009
Alw21I GWGCWC 1 cut(s) 769
Alw26I GTCTC 1 cut(s) 548
AlwI GGATC 1 cut(s) 1007
Aor51HI AGCGCT 1 cut(s) 160
ApeKI GCWGC 1 cut(s) 220
ApoI RAATTY 1 cut(s) 710
AseI ATTAAT 1 cut(s) 864
AsiGI ACCGGT 2 cut(s) 355, 647
Asp700I GAANNNNTTC 1 cut(s) 926
AspLEI GCGC 5 cut(s) 161, 229, 512, 514, 516
AspS9I GGNCC 6 cut(s) 479, 579, 601, 784, 967, 1022
AsuC2I CCSGG 1 cut(s) 971
AsuHPI GGTGA 4 cut(s) 17, 221, 637, 662
AvaII GGWCC 3 cut(s) 601, 784, 967
Bbv12I GWGCWC 1 cut(s) 769
BbvI GCAGC 1 cut(s) 207
BccI CCATC 2 cut(s) 172, 650
BceAI ACGGC 2 cut(s) 374, 479
BciT130I CCWGG 2 cut(s) 302, 537
BcnI CCSGG 1 cut(s) 971
BcoDI GTCTC 1 cut(s) 548
BfaI CTAG 2 cut(s) 36, 491
BfoI RGCGCY 1 cut(s) 162
BisI GCNGC 4 cut(s) 56, 221, 306, 309
BlsI GCNGC 4 cut(s) 57, 222, 307, 310
BmcAI AGTACT 2 cut(s) 792, 809
Bme1390I CCNGG 3 cut(s) 302, 537, 971
Bme18I GGWCC 3 cut(s) 601, 784, 967
BmgT120I GGNCC 6 cut(s) 479, 579, 601, 784, 967, 1022
BmiI GGNNCC 6 cut(s) 480, 534, 567, 785, 786, 961
BmrFI CCNGG 3 cut(s) 302, 537, 971
BmrI ACTGGG 2 cut(s) 782, 1029
BmsI GCATC 5 cut(s) 387, 441, 659, 744, 882
BmuI ACTGGG 2 cut(s) 782, 1029
BpmI CTGGAG 3 cut(s) 519, 722, 978
BpuEI CTTGAG 1 cut(s) 640
BpuMI CCSGG 1 cut(s) 971
BsaJI CCNNGG 5 cut(s) 341, 541, 575, 597, 963
BsaWI WCCGGW 3 cut(s) 355, 647, 769
BsaXI ACNNNNNCTCC 2 cut(s) 517, 547
Bsc4I CCNNNNNNNGG 6 cut(s) 254, 275, 476, 542, 769, 969
Bse118I RCCGGY 3 cut(s) 355, 647, 835
Bse1I ACTGG 5 cut(s) 296, 503, 788, 961, 1024
BseBI CCWGG 2 cut(s) 302, 537
BseDI CCNNGG 5 cut(s) 341, 541, 575, 597, 963
BseGI GGATG 3 cut(s) 193, 753, 759
BseLI CCNNNNNNNGG 6 cut(s) 254, 275, 476, 542, 769, 969
BseMII CTCAG 1 cut(s) 542
BseNI ACTGG 5 cut(s) 296, 503, 788, 961, 1024
BsePI GCGCGC 2 cut(s) 510, 512
BseX3I CGGCCG 1 cut(s) 306
BseXI GCAGC 1 cut(s) 207
BsgI GTGCAG 2 cut(s) 413, 581
Bsh1236I CGCG 3 cut(s) 510, 512, 514
Bsh1285I CGRYCG 1 cut(s) 309
BshTI ACCGGT 2 cut(s) 355, 647
BsiEI CGRYCG 1 cut(s) 309
BsiHKAI GWGCWC 1 cut(s) 769
BsiSI CCGG 7 cut(s) 356, 517, 648, 770, 797, 836, 970
BslFI GGGAC 2 cut(s) 797, 900
BslI CCNNNNNNNGG 6 cut(s) 254, 275, 476, 542, 769, 969
BsmAI GTCTC 1 cut(s) 548
BsmBI CGTCTC 1 cut(s) 548
BsmFI GGGAC 2 cut(s) 797, 900
Bsp1286I GDGCHC 1 cut(s) 769
Bsp143I GATC 1 cut(s) 1012
BspACI CCGC 7 cut(s) 13, 28, 56, 305, 309, 320, 508
BspCNI CTCAG 1 cut(s) 541
BspFNI CGCG 3 cut(s) 510, 512, 514
BspLI GGNNCC 6 cut(s) 480, 534, 567, 785, 786, 961
BspPI GGATC 1 cut(s) 1007
BsrFI RCCGGY 3 cut(s) 355, 647, 835
BsrI ACTGG 5 cut(s) 296, 503, 788, 961, 1024
BssAI RCCGGY 3 cut(s) 355, 647, 835
BssECI CCNNGG 5 cut(s) 341, 541, 575, 597, 963
BssHII GCGCGC 2 cut(s) 510, 512
BssMI GATC 1 cut(s) 1012
BssT1I CCWWGG 3 cut(s) 541, 575, 963
Bst2UI CCWGG 2 cut(s) 302, 537
Bst4CI ACNGT 6 cut(s) 345, 559, 601, 660, 827, 918
BstAPI GCANNNNNTGC 2 cut(s) 669, 810
BstC8I GCNNGC 8 cut(s) 225, 512, 514, 564, 594, 665, 802, 815
BstDEI CTNAG 1 cut(s) 528
BstDSI CCRYGG 2 cut(s) 341, 597
BstF5I GGATG 3 cut(s) 193, 753, 759
BstFNI CGCG 3 cut(s) 510, 512, 514
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 5 cut(s) 161, 229, 512, 514, 516
BstKTI GATC 1 cut(s) 1015
BstMAI GTCTC 1 cut(s) 548
BstMBI GATC 1 cut(s) 1012
BstMCI CGRYCG 1 cut(s) 309
BstMWI GCNNNNNNNGC 5 cut(s) 158, 226, 264, 669, 810
BstNI CCWGG 2 cut(s) 302, 537
BstSCI CCNGG 3 cut(s) 300, 535, 969
BstUI CGCG 3 cut(s) 510, 512, 514
BstV1I GCAGC 1 cut(s) 207
BstZI CGGCCG 1 cut(s) 306
BtgI CCRYGG 2 cut(s) 341, 597
BtgZI GCGATG 1 cut(s) 682
BtsCI GGATG 3 cut(s) 193, 753, 759
BtsIMutI CAGTG 3 cut(s) 665, 832, 1017
Cac8I GCNNGC 8 cut(s) 225, 512, 514, 564, 594, 665, 802, 815
CciNI GCGGCCGC 1 cut(s) 306
CfoI GCGC 5 cut(s) 161, 229, 512, 514, 516
Cfr10I RCCGGY 3 cut(s) 355, 647, 835
Cfr13I GGNCC 6 cut(s) 479, 579, 601, 784, 967, 1022
Csp6I GTAC 6 cut(s) 80, 656, 682, 694, 791, 808
CspAI ACCGGT 2 cut(s) 355, 647
CviAII CATG 2 cut(s) 445, 758
CviQI GTAC 6 cut(s) 80, 656, 682, 694, 791, 808
DdeI CTNAG 1 cut(s) 528
DpnI GATC 1 cut(s) 1014
DpnII GATC 1 cut(s) 1012
EaeI YGGCCR 3 cut(s) 306, 464, 500
EagI CGGCCG 1 cut(s) 306
EclXI CGGCCG 1 cut(s) 306
Eco130I CCWWGG 3 cut(s) 541, 575, 963
Eco147I AGGCCT 1 cut(s) 40
Eco47I GGWCC 3 cut(s) 601, 784, 967
Eco47III AGCGCT 1 cut(s) 160
Eco52I CGGCCG 1 cut(s) 306
EcoO109I RGGNCCY 1 cut(s) 784
EcoRII CCWGG 2 cut(s) 300, 535
EcoT14I CCWWGG 3 cut(s) 541, 575, 963
EcoT22I ATGCAT 1 cut(s) 759
ErhI CCWWGG 3 cut(s) 541, 575, 963
Esp3I CGTCTC 1 cut(s) 548
FaeI CATG 2 cut(s) 448, 761
FaiI YATR 5 cut(s) 446, 630, 635, 759, 776
FaqI GGGAC 2 cut(s) 797, 900
FatI CATG 2 cut(s) 444, 757
Fnu4HI GCNGC 4 cut(s) 56, 221, 306, 309
FokI GGATG 3 cut(s) 180, 760, 766
Fsp4HI GCNGC 4 cut(s) 56, 221, 306, 309
FspBI CTAG 2 cut(s) 36, 491
GlaI GCGC 5 cut(s) 160, 228, 511, 513, 515
GluI GCNGC 4 cut(s) 56, 221, 306, 309
GsuI CTGGAG 3 cut(s) 519, 722, 978
HaeII RGCGCY 1 cut(s) 162
HapII CCGG 7 cut(s) 356, 517, 648, 770, 797, 836, 970
HhaI GCGC 5 cut(s) 161, 229, 512, 514, 516
Hin1II CATG 2 cut(s) 448, 761
Hin6I GCGC 5 cut(s) 159, 227, 510, 512, 514
HinP1I GCGC 5 cut(s) 159, 227, 510, 512, 514
HinfI GANTC 3 cut(s) 496, 526, 946
HpaII CCGG 7 cut(s) 356, 517, 648, 770, 797, 836, 970
HphI GGTGA 4 cut(s) 17, 221, 637, 662
Hpy166II GTNNAC 2 cut(s) 212, 604
Hpy188III TCNNGA 3 cut(s) 371, 425, 701
Hpy8I GTNNAC 2 cut(s) 212, 604
HpyCH4III ACNGT 6 cut(s) 345, 559, 601, 660, 827, 918
HpyCH4IV ACGT 1 cut(s) 654
HpyCH4V TGCA 8 cut(s) 394, 448, 562, 663, 757, 804, 906, 1002
HpyF10VI GCNNNNNNNGC 5 cut(s) 158, 226, 264, 669, 810
HpyF3I CTNAG 1 cut(s) 528
HpySE526I ACGT 1 cut(s) 654
Hsp92II CATG 2 cut(s) 448, 761
HspAI GCGC 5 cut(s) 159, 227, 510, 512, 514
KflI GGGWCCC 1 cut(s) 784
Kzo9I GATC 1 cut(s) 1012
LmnI GCTCC 5 cut(s) 166, 538, 571, 703, 959
Lsp1109I GCAGC 1 cut(s) 207
LweI GCATC 5 cut(s) 387, 441, 659, 744, 882
MaeI CTAG 2 cut(s) 36, 491
MaeII ACGT 1 cut(s) 654
MaeIII GTNAC 3 cut(s) 345, 637, 650
MalI GATC 1 cut(s) 1014
MauBI CGCGCGCG 1 cut(s) 510
MboI GATC 1 cut(s) 1012
MboII GAAGA 2 cut(s) 167, 356
MhlI GDGCHC 1 cut(s) 769
MluCI AATT 4 cut(s) 19, 613, 710, 865
MlyI GAGTC 1 cut(s) 520
MmeI TCCRAC 1 cut(s) 129
Mph1103I ATGCAT 1 cut(s) 759
MroXI GAANNNNTTC 1 cut(s) 926
MseI TTAA 1 cut(s) 864
MslI CAYNNNNRTG 3 cut(s) 372, 426, 449
MspI CCGG 7 cut(s) 356, 517, 648, 770, 797, 836, 970
MspR9I CCNGG 3 cut(s) 302, 537, 971
MvaI CCWGG 2 cut(s) 302, 537
MvnI CGCG 3 cut(s) 510, 512, 514
MwoI GCNNNNNNNGC 5 cut(s) 158, 226, 264, 669, 810
NciI CCSGG 1 cut(s) 971
NdeII GATC 1 cut(s) 1012
NlaIII CATG 2 cut(s) 448, 761
NlaIV GGNNCC 6 cut(s) 480, 534, 567, 785, 786, 961
NmuCI GTSAC 3 cut(s) 345, 637, 650
NotI GCGGCCGC 1 cut(s) 306
NsiI ATGCAT 1 cut(s) 759
PauI GCGCGC 2 cut(s) 510, 512
PceI AGGCCT 1 cut(s) 40
PdmI GAANNNNTTC 1 cut(s) 926
PfeI GAWTC 2 cut(s) 496, 946
PinAI ACCGGT 2 cut(s) 355, 647
PkrI GCNGC 4 cut(s) 57, 222, 307, 310
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
PpuMI RGGWCCY 1 cut(s) 784
PshBI ATTAAT 1 cut(s) 864
Psp5II RGGWCCY 1 cut(s) 784
Psp6I CCWGG 2 cut(s) 300, 535
PspGI CCWGG 2 cut(s) 300, 535
PspN4I GGNNCC 6 cut(s) 480, 534, 567, 785, 786, 961
PspPI GGNCC 6 cut(s) 479, 579, 601, 784, 967, 1022
PspPPI RGGWCCY 1 cut(s) 784
PteI GCGCGC 2 cut(s) 510, 512
RsaI GTAC 6 cut(s) 81, 657, 683, 695, 792, 809
RsaNI GTAC 6 cut(s) 80, 656, 682, 694, 791, 808
RseI CAYNNNNRTG 3 cut(s) 372, 426, 449
SaqAI TTAA 1 cut(s) 864
SatI GCNGC 4 cut(s) 56, 221, 306, 309
Sau3AI GATC 1 cut(s) 1012
Sau96I GGNCC 6 cut(s) 479, 579, 601, 784, 967, 1022
ScaI AGTACT 2 cut(s) 792, 809
SchI GAGTC 1 cut(s) 520
ScrFI CCNGG 3 cut(s) 302, 537, 971
SduI GDGCHC 1 cut(s) 769
SfaNI GCATC 5 cut(s) 387, 441, 659, 744, 882
SgrAI CRCCGGYG 2 cut(s) 355, 647
SinI GGWCC 3 cut(s) 601, 784, 967
SmiMI CAYNNNNRTG 3 cut(s) 372, 426, 449
SmlI CTYRAG 1 cut(s) 619
SmoI CTYRAG 1 cut(s) 619
Sse9I AATT 4 cut(s) 19, 613, 710, 865
SseBI AGGCCT 1 cut(s) 40
SsiI CCGC 7 cut(s) 13, 28, 56, 305, 309, 320, 508
SspI AATATT 1 cut(s) 926
SspMI CTAG 2 cut(s) 36, 491
StuI AGGCCT 1 cut(s) 40
StyD4I CCNGG 3 cut(s) 300, 535, 969
StyI CCWWGG 3 cut(s) 541, 575, 963
TaaI ACNGT 6 cut(s) 345, 559, 601, 660, 827, 918
TaiI ACGT 1 cut(s) 657
TaqI TCGA 4 cut(s) 287, 524, 912, 952
TaqII GACCGA 1 cut(s) 777
TasI AATT 4 cut(s) 19, 613, 710, 865
TatI WGTACW 4 cut(s) 79, 693, 790, 807
TauI GCSGC 3 cut(s) 58, 308, 311
TfiI GAWTC 2 cut(s) 496, 946
Tru1I TTAA 1 cut(s) 864
Tru9I TTAA 1 cut(s) 864
TscAI CASTG 3 cut(s) 665, 832, 1024
TseFI GTSAC 3 cut(s) 345, 637, 650
TseI GCWGC 1 cut(s) 220
Tsp45I GTSAC 3 cut(s) 345, 637, 650
TspDTI ATGAA 3 cut(s) 83, 356, 410
TspGWI ACGGA 1 cut(s) 558
TspRI CASTG 3 cut(s) 665, 832, 1024
VpaK11BI GGWCC 3 cut(s) 601, 784, 967
VspI ATTAAT 1 cut(s) 864
XapI RAATTY 1 cut(s) 710
XmnI GAANNNNTTC 1 cut(s) 926
XspI CTAG 2 cut(s) 36, 491
ZrmI AGTACT 2 cut(s) 792, 809
Zsp2I ATGCAT 1 cut(s) 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.