Prupe.6G247600_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
24391190 .. 24391595
406 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G247600.1

Sequence Viewer

Length: 243 bp
ATGGAGATTGCAAGTTTCCTTTCGGAACACAAACGCACCATGCATGACAAAGCACCAGCCGTTTGGATGAATCCCGCATTGCCCAATTGCTGTGGTTTCGAAGAACGGTCCATCAATGTGCTGTTCTTGCTTTTGGGTCAAATGCTTGGGTGCTGTAAGCTTTTTGAATTGAAGTATTTCCGTAAGCACGCCAAGAATCATATAGGACTCATAATCCTTTTGTTTGCTACATTTGAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.29

Weight (kDa)

8.43

Isoelectric Point (pI)

55.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 75
AfaI GTAC 1 cut(s) 239
AgsI TTSAA 2 cut(s) 167, 172
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Asp700I GAANNNNTTC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 108
AsuII TTCGAA 1 cut(s) 99
AvaII GGWCC 1 cut(s) 108
BccI CCATC 1 cut(s) 119
BceAI ACGGC 1 cut(s) 44
BmcAI AGTACT 1 cut(s) 239
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 108
Bpu14I TTCGAA 1 cut(s) 99
Bse3DI GCAATG 1 cut(s) 77
BseGI GGATG 1 cut(s) 72
BseMI GCAATG 1 cut(s) 77
Bsp119I TTCGAA 1 cut(s) 99
BspACI CCGC 1 cut(s) 75
BspT104I TTCGAA 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 108
BstBI TTCGAA 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 189
BstF5I GGATG 1 cut(s) 72
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstXI CCANNNNNNTGG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 108
Csp6I GTAC 1 cut(s) 238
CspCI CAANNNNNGTGG 2 cut(s) 73, 108
CviAII CATG 2 cut(s) 40, 44
CviJI RGCY 2 cut(s) 59, 160
CviKI_1 RGCY 2 cut(s) 59, 160
CviQI GTAC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 45
FaeI CATG 2 cut(s) 43, 47
FaiI YATR 5 cut(s) 41, 45, 201, 203, 212
FatI CATG 2 cut(s) 39, 43
FauI CCCGC 1 cut(s) 82
FokI GGATG 1 cut(s) 79
Hin1II CATG 2 cut(s) 43, 47
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 3 cut(s) 70, 196, 207
Hpy188I TCNGA 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 108
HpyCH4V TGCA 2 cut(s) 11, 43
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
Hsp92II CATG 2 cut(s) 43, 47
LpnPI CCDG 1 cut(s) 69
MboII GAAGA 1 cut(s) 113
MfeI CAATTG 1 cut(s) 85
MluCI AATT 2 cut(s) 85, 167
MlyI GAGTC 1 cut(s) 201
Mph1103I ATGCAT 1 cut(s) 45
MroXI GAANNNNTTC 1 cut(s) 176
MslI CAYNNNNRTG 1 cut(s) 116
MunI CAATTG 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 127
NlaIII CATG 2 cut(s) 43, 47
NsiI ATGCAT 1 cut(s) 45
NspV TTCGAA 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 176
PfeI GAWTC 2 cut(s) 70, 196
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
PspPI GGNCC 1 cut(s) 108
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 116
Sau96I GGNCC 1 cut(s) 108
ScaI AGTACT 1 cut(s) 239
SchI GAGTC 1 cut(s) 201
SetI ASST 1 cut(s) 162
SfuI TTCGAA 1 cut(s) 99
SgeI CNNG 9 cut(s) 24, 52, 56, 68, 86, 139, 158, 200, 205
SinI GGWCC 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 116
Sse9I AATT 2 cut(s) 85, 167
SsiI CCGC 1 cut(s) 75
TaaI ACNGT 1 cut(s) 108
TaqI TCGA 1 cut(s) 99
TasI AATT 2 cut(s) 85, 167
TatI WGTACW 1 cut(s) 237
TfiI GAWTC 2 cut(s) 70, 196
TspDTI ATGAA 1 cut(s) 83
TspGWI ACGGA 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 176
ZrmI AGTACT 1 cut(s) 239
Zsp2I ATGCAT 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.