FvH4_2g08460

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0004320
Physical Location & Seq
Forward (+)
7383424 .. 7384962
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08460.t1

Sequence Viewer

Length: 1131 bp
ATGGACAACGAGGAGGAAGAAACGCAGAAAGAAATCAAACAAAAACGAAAGAATAGTGACCAATTCGGTGAGTCCTCATCAACCAGAGTTCGGAGCGCGGAGGAGGAGGAGGAGGACATGCTGGAACTTCGTCTCAATTCTCAACGCTCCTCCAGGCCTCGCCCAAGTGCGCCGCCGCAACCACATACCCGAAATCTTGTGCCGCCGGAGCTTCATCAACTCTCCATCACTCACTCTCCCCCAAACCTACAACCACGTGCCCTAAACCCTCCATCAAACCATGTTCATGTCTCAAACACACATCCTGTTTACCGGGGTGAACTCTTGCTGCCTGCCCCAGAGCCCCTTTTTTATCCCCTTAACAGCTTTCATGGCCCTAATCATCCCTCCTTGAATGCACGTCCACCACCTCCACCTCCACCTCCACAGTCGCAGCCATCAGTGATGTTTCATCTAGATATGAGACCAAGAGACGTGCAGGGGCCACAGCCGCAACCACAGGCGGTTTTTCATCAAGATGTGAGGGCAAGATCCGTGCAGAACCCACCTCCAGCGCCACCAGCAGGGGGGCTAAGACCACTGGTGCTTCGGCCTGCCCGTGCTCCTCGCCGGAACCCGACTCAGGCTCCCGGCCAAGGAAGGAGCGAGAAGGTGCCGGCTCCGTTTCCTTGGGCCACCACAAAGCGAGCAACAGTTTACAGCCTCAGTTACCTAGAGGACCATAATATACTGACCATTTCTGGTGAAGTGCAGTGCAAGCGATGTGAGACGCGGTACGAGATCGAGTACAATTTGAAGGATAAGTTTATGGAGGTCGCGACGTACATTGCTCATAACAGGTCGATGATGCATGACCGTGCACCGGATGTGTGGAAGGACCCGGTGCTTCCGACTTGCAAGAACTGCGATCAAGAGAATTGTGCGAAGCCGGTCGTCGCTGACAAAAAGAAAGAAATCAACTGGCTGTTTCTGTTTTTGGGACAGATGCTTGGGTGTTGCACACTGGAACAATTGAAGTATTTCTGTAAGCACACAAAGAATCATCGAACTGGAGCCAAGGACCGGGTTCTTTACCTCACTTATCTGTCTTTGGCCAAACAGCTTGATCCCACAGGTCCTTTTGATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

377

Amino Acids

42.75

Weight (kDa)

8.93

Isoelectric Point (pI)

70.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7086 PF23324 235 - 368 8.6e-66 Domain of unknown function (DUF7086)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 652
AccII CGCG 3 cut(s) 98, 772, 818
AciI CCGC 7 cut(s) 98, 173, 176, 203, 491, 503, 772
AclWI GGATC 3 cut(s) 525, 1100, 1118
AcoI YGGCCR 2 cut(s) 631, 1092
AcvI CACGTG 1 cut(s) 257
AfaI GTAC 3 cut(s) 776, 788, 824
AfiI CCNNNNNNNGG 7 cut(s) 90, 563, 566, 622, 635, 862, 1062
AgsI TTSAA 3 cut(s) 394, 796, 1015
AjiI CACGTC 2 cut(s) 401, 475
AjnI CCWGG 1 cut(s) 152
AluBI AGCT 3 cut(s) 211, 366, 1102
AluI AGCT 3 cut(s) 211, 366, 1102
Alw21I GWGCWC 2 cut(s) 604, 862
Alw26I GTCTC 5 cut(s) 137, 295, 457, 465, 761
Alw44I GTGCAC 1 cut(s) 858
AlwI GGATC 3 cut(s) 525, 1100, 1118
AoxI GGCC 7 cut(s) 155, 373, 482, 590, 631, 672, 1092
ApaLI GTGCAC 1 cut(s) 858
ApeKI GCWGC 2 cut(s) 328, 433
Asp700I GAANNNNTTC 1 cut(s) 1019
AspLEI GCGC 3 cut(s) 98, 172, 556
AspS9I GGNCC 7 cut(s) 374, 482, 672, 718, 877, 1060, 1115
AsuC2I CCSGG 4 cut(s) 314, 630, 881, 1064
AsuHPI GGTGA 3 cut(s) 80, 329, 755
AvaII GGWCC 4 cut(s) 718, 877, 1060, 1115
BaeGI GKGCMC 2 cut(s) 262, 862
BalI TGGCCA 1 cut(s) 1094
BanI GGYRCC 1 cut(s) 652
BanII GRGCYC 1 cut(s) 345
BbrPI CACGTG 1 cut(s) 257
Bbv12I GWGCWC 2 cut(s) 604, 862
BbvI GCAGC 2 cut(s) 315, 445
BccI CCATC 3 cut(s) 233, 280, 445
BciT130I CCWGG 1 cut(s) 154
BcnI CCSGG 4 cut(s) 314, 630, 881, 1064
BcoDI GTCTC 5 cut(s) 137, 295, 457, 465, 761
BfaI CTAG 2 cut(s) 455, 713
BfoI RGCGCY 1 cut(s) 557
BisI GCNGC 6 cut(s) 173, 176, 203, 329, 434, 491
BlsI GCNGC 6 cut(s) 174, 177, 204, 330, 435, 492
Bme1390I CCNGG 5 cut(s) 154, 314, 630, 881, 1064
Bme18I GGWCC 4 cut(s) 718, 877, 1060, 1115
BmgBI CACGTC 2 cut(s) 401, 475
BmgT120I GGNCC 7 cut(s) 374, 482, 672, 718, 877, 1060, 1115
BmiI GGNNCC 7 cut(s) 483, 614, 627, 654, 660, 879, 1054
BmrFI CCNGG 5 cut(s) 154, 314, 630, 881, 1064
BmsI GCATC 2 cut(s) 837, 975
BpmI CTGGAG 3 cut(s) 136, 534, 1071
BpuMI CCSGG 4 cut(s) 314, 630, 881, 1064
BsaAI YACGTR 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 457
BsaJI CCNNGG 4 cut(s) 313, 634, 668, 1056
BsaWI WCCGGW 1 cut(s) 862
BsaXI ACNNNNNCTCC 4 cut(s) 220, 250, 610, 640
Bsc4I CCNNNNNNNGG 7 cut(s) 90, 563, 566, 622, 635, 862, 1062
Bse118I RCCGGY 2 cut(s) 655, 928
Bse1I ACTGG 4 cut(s) 585, 965, 1008, 1054
Bse3DI GCAATG 1 cut(s) 825
BseBI CCWGG 1 cut(s) 154
BseDI CCNNGG 4 cut(s) 313, 634, 668, 1056
BseGI GGATG 3 cut(s) 301, 382, 871
BseLI CCNNNNNNNGG 7 cut(s) 90, 563, 566, 622, 635, 862, 1062
BseMI GCAATG 1 cut(s) 825
BseMII CTCAG 2 cut(s) 635, 718
BseNI ACTGG 4 cut(s) 585, 965, 1008, 1054
BseRI GAGGAG 7 cut(s) 26, 116, 119, 122, 125, 139, 594
BseSI GKGCMC 2 cut(s) 262, 862
BseXI GCAGC 2 cut(s) 315, 445
BsgI GTGCAG 3 cut(s) 497, 557, 770
Bsh1236I CGCG 3 cut(s) 98, 772, 818
Bsh1285I CGRYCG 1 cut(s) 933
BshFI GGCC 7 cut(s) 157, 375, 484, 592, 633, 674, 1094
BshNI GGYRCC 1 cut(s) 652
BsiEI CGRYCG 1 cut(s) 933
BsiHKAI GWGCWC 2 cut(s) 604, 862
BsiSI CCGG 9 cut(s) 206, 313, 610, 630, 656, 863, 881, 929, 1063
BslFI GGGAC 1 cut(s) 993
BslI CCNNNNNNNGG 7 cut(s) 90, 563, 566, 622, 635, 862, 1062
BsmAI GTCTC 5 cut(s) 137, 295, 457, 465, 761
BsmBI CGTCTC 3 cut(s) 137, 465, 761
BsmFI GGGAC 1 cut(s) 993
BsmI GAATGC 1 cut(s) 400
BsnI GGCC 7 cut(s) 157, 375, 484, 592, 633, 674, 1094
Bso31I GGTCTC 1 cut(s) 457
Bsp1286I GDGCHC 4 cut(s) 262, 345, 604, 862
Bsp143I GATC 5 cut(s) 530, 780, 907, 1105, 1123
Bsp68I TCGCGA 1 cut(s) 818
BspACI CCGC 7 cut(s) 98, 173, 176, 203, 491, 503, 772
BspANI GGCC 7 cut(s) 157, 375, 484, 592, 633, 674, 1094
BspCNI CTCAG 2 cut(s) 634, 717
BspFNI CGCG 3 cut(s) 98, 772, 818
BspLI GGNNCC 7 cut(s) 483, 614, 627, 654, 660, 879, 1054
BspPI GGATC 3 cut(s) 525, 1100, 1118
BspT107I GGYRCC 1 cut(s) 652
BspTNI GGTCTC 1 cut(s) 457
BsrDI GCAATG 1 cut(s) 825
BsrFI RCCGGY 2 cut(s) 655, 928
BsrI ACTGG 4 cut(s) 585, 965, 1008, 1054
BssAI RCCGGY 2 cut(s) 655, 928
BssECI CCNNGG 4 cut(s) 313, 634, 668, 1056
BssMI GATC 5 cut(s) 530, 780, 907, 1105, 1123
BssT1I CCWWGG 3 cut(s) 634, 668, 1056
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 3 cut(s) 429, 694, 857
BstAPI GCANNNNNTGC 1 cut(s) 903
BstBAI YACGTR 1 cut(s) 257
BstC8I GCNNGC 5 cut(s) 333, 594, 657, 687, 758
BstDEI CTNAG 3 cut(s) 572, 621, 704
BstF5I GGATG 3 cut(s) 301, 382, 871
BstFNI CGCG 3 cut(s) 98, 772, 818
BstH2I RGCGCY 1 cut(s) 557
BstHHI GCGC 3 cut(s) 98, 172, 556
BstKTI GATC 5 cut(s) 533, 783, 910, 1108, 1126
BstMAI GTCTC 5 cut(s) 137, 295, 457, 465, 761
BstMBI GATC 5 cut(s) 530, 780, 907, 1105, 1123
BstMCI CGRYCG 1 cut(s) 933
BstMWI GCNNNNNNNGC 6 cut(s) 208, 372, 490, 560, 757, 903
BstNI CCWGG 1 cut(s) 154
BstNSI RCATGY 1 cut(s) 121
BstSCI CCNGG 5 cut(s) 152, 312, 628, 879, 1062
BstSLI GKGCMC 2 cut(s) 262, 862
BstUI CGCG 3 cut(s) 98, 772, 818
BstV1I GCAGC 2 cut(s) 315, 445
BstX2I RGATCY 1 cut(s) 530
BstYI RGATCY 1 cut(s) 530
BsuRI GGCC 7 cut(s) 157, 375, 484, 592, 633, 674, 1094
BtgZI GCGATG 1 cut(s) 775
BtrI CACGTC 2 cut(s) 401, 475
BtsCI GGATG 3 cut(s) 301, 382, 871
BtsI GCAGTG 1 cut(s) 758
BtsIMutI CAGTG 4 cut(s) 447, 578, 758, 1001
BtuMI TCGCGA 1 cut(s) 818
Cac8I GCNNGC 5 cut(s) 333, 594, 657, 687, 758
CfoI GCGC 3 cut(s) 98, 172, 556
Cfr10I RCCGGY 2 cut(s) 655, 928
Cfr13I GGNCC 7 cut(s) 374, 482, 672, 718, 877, 1060, 1115
CseI GACGC 1 cut(s) 778
Csp6I GTAC 3 cut(s) 775, 787, 823
CviAII CATG 5 cut(s) 118, 281, 287, 371, 851
CviQI GTAC 3 cut(s) 775, 787, 823
DdeI CTNAG 3 cut(s) 572, 621, 704
DpnI GATC 5 cut(s) 532, 782, 909, 1107, 1125
DpnII GATC 5 cut(s) 530, 780, 907, 1105, 1123
EaeI YGGCCR 2 cut(s) 631, 1092
Eco130I CCWWGG 3 cut(s) 634, 668, 1056
Eco147I AGGCCT 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 345
Eco31I GGTCTC 1 cut(s) 457
Eco47I GGWCC 4 cut(s) 718, 877, 1060, 1115
Eco72I CACGTG 1 cut(s) 257
EcoO109I RGGNCCY 2 cut(s) 877, 1115
EcoRII CCWGG 1 cut(s) 152
EcoT14I CCWWGG 3 cut(s) 634, 668, 1056
EcoT22I ATGCAT 1 cut(s) 852
EcoT38I GRGCYC 1 cut(s) 345
ErhI CCWWGG 3 cut(s) 634, 668, 1056
Esp3I CGTCTC 3 cut(s) 137, 465, 761
FaeI CATG 5 cut(s) 121, 284, 290, 374, 854
FaqI GGGAC 1 cut(s) 993
FatI CATG 5 cut(s) 117, 280, 286, 370, 850
Fnu4HI GCNGC 6 cut(s) 173, 176, 203, 329, 434, 491
FokI GGATG 3 cut(s) 288, 369, 878
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 6 cut(s) 173, 176, 203, 329, 434, 491
FspBI CTAG 2 cut(s) 455, 713
GlaI GCGC 3 cut(s) 97, 171, 555
GluI GCNGC 6 cut(s) 173, 176, 203, 329, 434, 491
GsuI CTGGAG 3 cut(s) 136, 534, 1071
HaeII RGCGCY 1 cut(s) 557
HaeIII GGCC 7 cut(s) 157, 375, 484, 592, 633, 674, 1094
HapII CCGG 9 cut(s) 206, 313, 610, 630, 656, 863, 881, 929, 1063
HgaI GACGC 1 cut(s) 778
HhaI GCGC 3 cut(s) 98, 172, 556
Hin1II CATG 5 cut(s) 121, 284, 290, 374, 854
Hin6I GCGC 3 cut(s) 96, 170, 554
HinP1I GCGC 3 cut(s) 96, 170, 554
HinfI GANTC 3 cut(s) 71, 619, 1039
HpaII CCGG 9 cut(s) 206, 313, 610, 630, 656, 863, 881, 929, 1063
HphI GGTGA 3 cut(s) 80, 329, 755
Hpy166II GTNNAC 5 cut(s) 310, 320, 404, 697, 860
Hpy188I TCNGA 2 cut(s) 93, 891
Hpy188III TCNNGA 4 cut(s) 455, 515, 817, 911
Hpy8I GTNNAC 5 cut(s) 310, 320, 404, 697, 860
Hpy99I CGWCG 2 cut(s) 823, 938
HpyAV CCTTC 4 cut(s) 633, 643, 790, 868
HpyCH4III ACNGT 3 cut(s) 429, 694, 857
HpyCH4IV ACGT 4 cut(s) 256, 400, 474, 821
HpyCH4V TGCA 9 cut(s) 398, 478, 538, 751, 756, 850, 860, 897, 999
HpyF10VI GCNNNNNNNGC 6 cut(s) 208, 372, 490, 560, 757, 903
HpyF3I CTNAG 3 cut(s) 572, 621, 704
HpySE526I ACGT 4 cut(s) 256, 400, 474, 821
Hsp92II CATG 5 cut(s) 121, 284, 290, 374, 854
HspAI GCGC 3 cut(s) 96, 170, 554
KroI GCCGGC 1 cut(s) 655
KroNI GCCGGC 1 cut(s) 657
Kzo9I GATC 5 cut(s) 530, 780, 907, 1105, 1123
LmnI GCTCC 8 cut(s) 93, 152, 208, 607, 631, 642, 664, 1052
Lsp1109I GCAGC 2 cut(s) 315, 445
LweI GCATC 2 cut(s) 837, 975
MaeI CTAG 2 cut(s) 455, 713
MaeII ACGT 4 cut(s) 256, 400, 474, 821
MaeIII GTNAC 2 cut(s) 56, 707
MalI GATC 5 cut(s) 532, 782, 909, 1107, 1125
MboI GATC 5 cut(s) 530, 780, 907, 1105, 1123
MboII GAAGA 1 cut(s) 29
MfeI CAATTG 1 cut(s) 1010
MflI RGATCY 1 cut(s) 530
MhlI GDGCHC 4 cut(s) 262, 345, 604, 862
MlsI TGGCCA 1 cut(s) 1094
MluCI AATT 5 cut(s) 62, 136, 790, 916, 1010
MluNI TGGCCA 1 cut(s) 1094
MlyI GAGTC 2 cut(s) 80, 613
MmeI TCCRAC 1 cut(s) 914
Mox20I TGGCCA 1 cut(s) 1094
Mph1103I ATGCAT 1 cut(s) 852
MroNI GCCGGC 1 cut(s) 655
MroXI GAANNNNTTC 1 cut(s) 1019
MscI TGGCCA 1 cut(s) 1094
MseI TTAA 1 cut(s) 360
MslI CAYNNNNRTG 3 cut(s) 285, 516, 855
Msp20I TGGCCA 1 cut(s) 1094
MspI CCGG 9 cut(s) 206, 313, 610, 630, 656, 863, 881, 929, 1063
MspR9I CCNGG 5 cut(s) 154, 314, 630, 881, 1064
MunI CAATTG 1 cut(s) 1010
Mva1269I GAATGC 1 cut(s) 400
MvaI CCWGG 1 cut(s) 154
MvnI CGCG 3 cut(s) 98, 772, 818
MwoI GCNNNNNNNGC 6 cut(s) 208, 372, 490, 560, 757, 903
NaeI GCCGGC 1 cut(s) 657
NciI CCSGG 4 cut(s) 314, 630, 881, 1064
NdeII GATC 5 cut(s) 530, 780, 907, 1105, 1123
NgoMIV GCCGGC 1 cut(s) 655
NlaIII CATG 5 cut(s) 121, 284, 290, 374, 854
NlaIV GGNNCC 7 cut(s) 483, 614, 627, 654, 660, 879, 1054
NmuCI GTSAC 1 cut(s) 56
NruI TCGCGA 1 cut(s) 818
NsiI ATGCAT 1 cut(s) 852
NspI RCATGY 1 cut(s) 121
PceI AGGCCT 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 595
PctI GAATGC 1 cut(s) 400
PdiI GCCGGC 1 cut(s) 657
PdmI GAANNNNTTC 1 cut(s) 1019
PfeI GAWTC 1 cut(s) 1039
PkrI GCNGC 6 cut(s) 174, 177, 204, 330, 435, 492
PleI GAGTC 2 cut(s) 79, 613
PmaCI CACGTG 1 cut(s) 257
PmlI CACGTG 1 cut(s) 257
PpsI GAGTC 2 cut(s) 79, 613
Ppu21I YACGTR 1 cut(s) 257
PpuMI RGGWCCY 2 cut(s) 877, 1115
Psp5II RGGWCCY 2 cut(s) 877, 1115
Psp6I CCWGG 1 cut(s) 152
PspCI CACGTG 1 cut(s) 257
PspGI CCWGG 1 cut(s) 152
PspN4I GGNNCC 7 cut(s) 483, 614, 627, 654, 660, 879, 1054
PspPI GGNCC 7 cut(s) 374, 482, 672, 718, 877, 1060, 1115
PspPPI RGGWCCY 2 cut(s) 877, 1115
PsuI RGATCY 1 cut(s) 530
RruI TCGCGA 1 cut(s) 818
RsaI GTAC 3 cut(s) 776, 788, 824
RsaNI GTAC 3 cut(s) 775, 787, 823
RseI CAYNNNNRTG 3 cut(s) 285, 516, 855
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 6 cut(s) 173, 176, 203, 329, 434, 491
Sau3AI GATC 5 cut(s) 530, 780, 907, 1105, 1123
Sau96I GGNCC 7 cut(s) 374, 482, 672, 718, 877, 1060, 1115
SchI GAGTC 2 cut(s) 80, 613
ScrFI CCNGG 5 cut(s) 154, 314, 630, 881, 1064
SduI GDGCHC 4 cut(s) 262, 345, 604, 862
SfaNI GCATC 2 cut(s) 837, 975
SinI GGWCC 4 cut(s) 718, 877, 1060, 1115
SmiMI CAYNNNNRTG 3 cut(s) 285, 516, 855
Sse9I AATT 5 cut(s) 62, 136, 790, 916, 1010
SseBI AGGCCT 1 cut(s) 157
SsiI CCGC 7 cut(s) 98, 173, 176, 203, 491, 503, 772
SspMI CTAG 2 cut(s) 455, 713
StuI AGGCCT 1 cut(s) 157
StyD4I CCNGG 5 cut(s) 152, 312, 628, 879, 1062
StyI CCWWGG 3 cut(s) 634, 668, 1056
TaaI ACNGT 3 cut(s) 429, 694, 857
TaiI ACGT 4 cut(s) 259, 403, 477, 824
TaqI TCGA 3 cut(s) 783, 842, 1045
TasI AATT 5 cut(s) 62, 136, 790, 916, 1010
TatI WGTACW 1 cut(s) 786
TauI GCSGC 4 cut(s) 175, 178, 205, 493
TfiI GAWTC 1 cut(s) 1039
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TscAI CASTG 4 cut(s) 447, 585, 758, 1008
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 2 cut(s) 328, 433
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 5 cut(s) 203, 275, 359, 440, 500
TspGWI ACGGA 2 cut(s) 523, 651
TspRI CASTG 4 cut(s) 447, 585, 758, 1008
VneI GTGCAC 1 cut(s) 858
VpaK11BI GGWCC 4 cut(s) 718, 877, 1060, 1115
XbaI TCTAGA 1 cut(s) 454
XceI RCATGY 1 cut(s) 121
XmnI GAANNNNTTC 1 cut(s) 1019
XspI CTAG 2 cut(s) 455, 713
Zsp2I ATGCAT 1 cut(s) 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.