Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004565

Physical Location & Seq

Genomic Coordinates Reverse (-)

18356799 .. 18360447

Gene Structure 3649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G49600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGCAGACACCAAACAACAACGGTTCAACAGATTCAGTGTTACCACCAACATCAGCCGGAACAACACCACCACCACCGTTGCAGCAATCAACACCACCACCGCAGCAGCAACAACAACAACAGTGGCAACAACAACAACAATGGATGGCTGCGATGCAGCAATACCCTGCAGCTGCTATGGCTATGATGCAACAACAACAGATGATGATGTATCCTCACCCTCAATACGCTCCTTACAATCAAGCTGCTTATCAACAGCATCCTCAGTTTCAATACGCTGCTTATCAACAGCAGCAGCAGCAACATCACCAGAGTCAGCAGCAGCCACGCGGTGGATCTGGTGGTGATGATGTCAAGACTCTTTGGGTTGGTGATCTTCTTCATTGGATGGATGAGACTTATCTCCATACCTGTTTCTCTCACACCAATGAGGTTTCTTCTGTGAAAGTTATACGCAACAAGCAAACTTGTCAATCTGAAGGATATGGGTTTGTTGAGTTTCTTTCACGTTCAGCAGCTGAGGAAGCTCTTCAGAGCTTTAGCGGTGTTACAATGCCGAACGCGGAACAGCCTTTCCGTTTAAACTGGGCATCTTTCAGTACTGGTGAGAAAAGAGCATCAGAGAATGGTCCTGACCTATCCATATTTGTTGGAGATTTGGCTCCAGATGTGAGTGATGCTGTCTTGCTTGAGACTTTTGCTGGTAGATATCCATCTGTCAAAGGTGCTAAAGTTGTGATTGATTCCAACACTGGGCGTTCCAAAGGTTACGGGTTTGTTAGGTTTGGTGATGAGAATGAGCGATCAAGAGCTATGACAGAAATGAATGGTGCTTTCTGTTCAAGCAGGCAAATGCGTGTTGGTATCGCAACCCCGAAAAGGGCTGCTGCTTACGGCCAACAAAATGGTTCACAAGCTCTTACACTTGCTGGTGGACATGGAGGGAATGGTTCAATGTCTGATGGAGAATCAAATAACTCAACAATATTTGTTGGCGGTCTTGATGCTGATGTTACTGAAGAAGACCTCATGCAACCTTTTTCCGATTTTGGGGAGGTTGTTTCAGTGAAGATCCCAGTAGGGAAAGGATGTGGCTTTGTCCAATTTGCTAACAGGCAAAGTGCTGAGGAAGCCATCGGGAACTTGAACGGGACAGTCATTGGGAAGAACACTGTCCGCCTTTCATGGGGAAGAAGCCCCAACAAACAGTGGAGAAGTGACTCTGGCAACCAATGGAATGGAGGATATTCAAGAGGTCAAGGATACAACAATGGATATGCCAATCAGGACTCAAACATGTACGCTACTGCAGCGGCTGCAGTCCCGGGAGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008143 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010494 GO:0032991 GO:0033554 GO:0034605 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070717 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

445

Amino Acids

48.48

Weight (kDa)

5.65

Isoelectric Point (pI)

51.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	121 - 187	1.4e-10	RNA recognition motif
RRM_1	PF00076	215 - 285	3.8e-15	RNA recognition motif
RRM_1	PF00076	329 - 392	1.4e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49600 AT1G49600 AT1G49600 AT3G19130
fragaria_vesca	FvH4_2g06660 FvH4_2g06660 FvH4_2g06660
malus_domestica	MD05G1076000.v1.1 MD10G1090700.v1.1
prunus_persica	Prupe.8G119500_v2.0.a1 Prupe.8G119500_v2.0.a1
pyrus_communis	pycom05g06950 pycom10g07420
rosa_chinensis	RchiOBHm_Chr4g0407821 RchiOBHm_Chr6g0258701
rosa_laevigata	RLG00000014588
rosa_multiflora	Rmu_ssc0000014.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352380 Rroxscaffold_7G00206030
rosa_rugosa	Rorug04G0081300 Rorug05G0582900 Rorug05G0583000 Rorug05G0583100
rosa_samantha	Rh4AG146600 Rh4BG144100 Rh4CG153100 Rh4DG140600 Rh6BG091100 Rh6DG082700
rosa_wichuraiana	Rw0G022700 Rw6G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	332
AccII	CGCG	2 cut(s)	330, 563
AciI	CCGC	7 cut(s)	101, 330, 543, 563, 996, 1177, 1313
AclWI	GGATC	2 cut(s)	343, 1066
AcoI	YGGCCR	1 cut(s)	895
AcuI	CTGAAG	3 cut(s)	498, 515, 1038
AdeI	CACNNNGTG	1 cut(s)	332
AfaI	GTAC	2 cut(s)	601, 1301
AfiI	CCNNNNNNNGG	6 cut(s)	332, 753, 879, 880, 1050, 1186
AflIII	ACRYGT	1 cut(s)	1296
AgsI	TTSAA	6 cut(s)	27, 272, 843, 954, 1147, 1251
AloI	GAACNNNNNNTCC	2 cut(s)	558, 590
AluBI	AGCT	8 cut(s)	173, 245, 518, 527, 537, 812, 917, 1331
AluI	AGCT	8 cut(s)	173, 245, 518, 527, 537, 812, 917, 1331
Alw26I	GTCTC	2 cut(s)	389, 686
AlwI	GGATC	2 cut(s)	343, 1066
AlwNI	CAGNNNCTG	2 cut(s)	518, 1316
Ama87I	CYCGRG	1 cut(s)	1324
AoxI	GGCC	1 cut(s)	895
Asp700I	GAANNNNTTC	1 cut(s)	528
AspS9I	GGNCC	1 cut(s)	629
AsuC2I	CCSGG	2 cut(s)	1325, 1326
AsuHPI	GGTGA	6 cut(s)	209, 299, 356, 383, 617, 800
AvaI	CYCGRG	1 cut(s)	1324
AvaII	GGWCC	1 cut(s)	629
BbsI	GAAGAC	1 cut(s)	1029
BbvCI	CCTCAGC	2 cut(s)	519, 1125
BccI	CCATC	5 cut(s)	139, 382, 721, 956, 1142
BceAI	ACGGC	1 cut(s)	910
BciVI	GTATCC	2 cut(s)	222, 1256
BcnI	CCSGG	2 cut(s)	1325, 1326
BcoDI	GTCTC	2 cut(s)	389, 686
BfmI	CTRYAG	3 cut(s)	168, 1308, 1317
BfuI	GTATCC	2 cut(s)	222, 1256
BmcAI	AGTACT	1 cut(s)	601
Bme1390I	CCNGG	2 cut(s)	1325, 1326
Bme18I	GGWCC	1 cut(s)	629
BmeT110I	CYCGRG	1 cut(s)	1324
BmgT120I	GGNCC	1 cut(s)	629
BmiI	GGNNCC	1 cut(s)	663
BmrFI	CCNGG	2 cut(s)	1325, 1326
BmrI	ACTGGG	3 cut(s)	595, 762, 1070
BmsI	GCATC	7 cut(s)	144, 177, 268, 599, 626, 667, 994
BmuI	ACTGGG	3 cut(s)	595, 762, 1070
BpiI	GAAGAC	1 cut(s)	1029
BpmI	CTGGAG	1 cut(s)	648
Bpu10I	CCTNAGC	2 cut(s)	519, 1125
BpuEI	CTTGAG	1 cut(s)	710
BpuMI	CCSGG	2 cut(s)	1325, 1326
BsaBI	GATNNNNATC	1 cut(s)	712
BsaJI	CCNNGG	1 cut(s)	1324
Bsc4I	CCNNNNNNNGG	6 cut(s)	332, 753, 879, 880, 1050, 1186
Bse1I	ACTGG	4 cut(s)	590, 607, 757, 1076
Bse8I	GATNNNNATC	1 cut(s)	712
BseDI	CCNNGG	1 cut(s)	1324
BseGI	GGATG	5 cut(s)	150, 259, 393, 397, 1094
BseJI	GATNNNNATC	1 cut(s)	712
BseLI	CCNNNNNNNGG	6 cut(s)	332, 753, 879, 880, 1050, 1186
BseMII	CTCAG	3 cut(s)	278, 510, 1116
BseNI	ACTGG	4 cut(s)	590, 607, 757, 1076
Bsh1236I	CGCG	2 cut(s)	330, 563
BshFI	GGCC	1 cut(s)	897
BsiHKCI	CYCGRG	1 cut(s)	1324
BsiSI	CCGG	2 cut(s)	57, 1325
BslFI	GGGAC	2 cut(s)	1165, 1307
BslI	CCNNNNNNNGG	6 cut(s)	332, 753, 879, 880, 1050, 1186
BsmAI	GTCTC	2 cut(s)	389, 686
BsmFI	GGGAC	2 cut(s)	1165, 1307
BsnI	GGCC	1 cut(s)	897
BsoBI	CYCGRG	1 cut(s)	1324
Bsp143I	GATC	4 cut(s)	335, 373, 803, 1071
BspACI	CCGC	7 cut(s)	101, 330, 543, 563, 996, 1177, 1313
BspANI	GGCC	1 cut(s)	897
BspCNI	CTCAG	3 cut(s)	277, 511, 1117
BspFNI	CGCG	2 cut(s)	330, 563
BspLI	GGNNCC	1 cut(s)	663
BspMAI	CTGCAG	3 cut(s)	172, 1312, 1321
BspPI	GGATC	2 cut(s)	343, 1066
BspQI	GCTCTTC	1 cut(s)	534
BsrI	ACTGG	4 cut(s)	590, 607, 757, 1076
BssECI	CCNNGG	1 cut(s)	1324
BssMI	GATC	4 cut(s)	335, 373, 803, 1071
Bst4CI	ACNGT	6 cut(s)	23, 78, 123, 1156, 1174, 1209
Bst6I	CTCTTC	1 cut(s)	534
BstAPI	GCANNNNNTGC	1 cut(s)	1316
BstC8I	GCNNGC	1 cut(s)	848
BstDEI	CTNAG	3 cut(s)	264, 519, 1125
BstF5I	GGATG	5 cut(s)	150, 259, 393, 397, 1094
BstFNI	CGCG	2 cut(s)	330, 563
BstKTI	GATC	4 cut(s)	338, 376, 806, 1074
BstMAI	GTCTC	2 cut(s)	389, 686
BstMBI	GATC	4 cut(s)	335, 373, 803, 1071
BstMWI	GCNNNNNNNGC	6 cut(s)	179, 298, 524, 1130, 1310, 1316
BstNSI	RCATGY	1 cut(s)	1300
BstSCI	CCNGG	2 cut(s)	1323, 1324
BstSFI	CTRYAG	3 cut(s)	168, 1308, 1317
BstUI	CGCG	2 cut(s)	330, 563
BstV2I	GAAGAC	1 cut(s)	1029
BstX2I	RGATCY	2 cut(s)	335, 1071
BstXI	CCANNNNNNTGG	2 cut(s)	905, 1238
BstYI	RGATCY	2 cut(s)	335, 1071
BsuI	GTATCC	2 cut(s)	222, 1256
BsuRI	GGCC	1 cut(s)	897
BtgZI	GCGATG	1 cut(s)	167
BtsCI	GGATG	5 cut(s)	150, 259, 393, 397, 1094
BtsIMutI	CAGTG	6 cut(s)	42, 128, 750, 1071, 1170, 1214
Cac8I	GCNNGC	1 cut(s)	848
CaiI	CAGNNNCTG	2 cut(s)	518, 1316
Cfr13I	GGNCC	1 cut(s)	629
Cfr9I	CCCGGG	1 cut(s)	1324
Csp6I	GTAC	2 cut(s)	600, 1300
CspCI	CAANNNNNGTGG	4 cut(s)	60, 95, 104, 139
CviAII	CATG	4 cut(s)	938, 1030, 1185, 1297
CviQI	GTAC	2 cut(s)	600, 1300
DdeI	CTNAG	3 cut(s)	264, 519, 1125
DpnI	GATC	4 cut(s)	337, 375, 805, 1073
DpnII	GATC	4 cut(s)	335, 373, 803, 1071
DraI	TTTAAA	1 cut(s)	582
DraIII	CACNNNGTG	1 cut(s)	332
EaeI	YGGCCR	1 cut(s)	895
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
EciI	GGCGGA	1 cut(s)	1166
Eco32I	GATATC	1 cut(s)	710
Eco47I	GGWCC	1 cut(s)	629
Eco57I	CTGAAG	3 cut(s)	498, 515, 1038
Eco88I	CYCGRG	1 cut(s)	1324
EcoRV	GATATC	1 cut(s)	710
FaeI	CATG	4 cut(s)	941, 1033, 1188, 1300
FaqI	GGGAC	2 cut(s)	1165, 1307
FatI	CATG	4 cut(s)	937, 1029, 1184, 1296
FokI	GGATG	5 cut(s)	157, 246, 400, 404, 1101
GsuI	CTGGAG	1 cut(s)	648
HaeIII	GGCC	1 cut(s)	897
HapII	CCGG	2 cut(s)	57, 1325
Hin1II	CATG	4 cut(s)	941, 1033, 1188, 1300
HinfI	GANTC	7 cut(s)	32, 313, 358, 743, 968, 1220, 1289
HpaII	CCGG	2 cut(s)	57, 1325
HphI	GGTGA	6 cut(s)	209, 299, 356, 383, 617, 800
Hpy166II	GTNNAC	2 cut(s)	911, 935
Hpy188I	TCNGA	5 cut(s)	478, 534, 622, 961, 1045
Hpy188III	TCNNGA	9 cut(s)	355, 632, 665, 807, 1001, 1138, 1251, 1286, 1335
Hpy8I	GTNNAC	2 cut(s)	911, 935
HpyAV	CCTTC	1 cut(s)	473
HpyCH4III	ACNGT	6 cut(s)	23, 78, 123, 1156, 1174, 1209
HpyCH4IV	ACGT	1 cut(s)	508
HpyCH4V	TGCA	8 cut(s)	4, 82, 157, 170, 190, 1033, 1310, 1319
HpyF10VI	GCNNNNNNNGC	6 cut(s)	179, 298, 524, 1130, 1310, 1316
HpyF3I	CTNAG	3 cut(s)	264, 519, 1125
HpySE526I	ACGT	1 cut(s)	508
Hsp92II	CATG	4 cut(s)	941, 1033, 1188, 1300
Kzo9I	GATC	4 cut(s)	335, 373, 803, 1071
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	3 cut(s)	235, 667, 1328
LweI	GCATC	7 cut(s)	144, 177, 268, 599, 626, 667, 994
MaeII	ACGT	1 cut(s)	508
MaeIII	GTNAC	5 cut(s)	39, 547, 767, 1012, 1217
MalI	GATC	4 cut(s)	337, 375, 805, 1073
MboI	GATC	4 cut(s)	335, 373, 803, 1071
MboII	GAAGA	9 cut(s)	368, 371, 429, 521, 1031, 1034, 1081, 1177, 1203
MflI	RGATCY	2 cut(s)	335, 1071
MluCI	AATT	1 cut(s)	1103
MlyI	GAGTC	4 cut(s)	322, 352, 1214, 1283
MmeI	TCCRAC	2 cut(s)	631, 771
MroXI	GAANNNNTTC	1 cut(s)	528
MseI	TTAA	1 cut(s)	581
MslI	CAYNNNNRTG	1 cut(s)	426
MspA1I	CMGCKG	3 cut(s)	173, 518, 1313
MspI	CCGG	2 cut(s)	57, 1325
MspR9I	CCNGG	2 cut(s)	1325, 1326
MssI	GTTTAAAC	1 cut(s)	582
MvnI	CGCG	2 cut(s)	330, 563
MwoI	GCNNNNNNNGC	6 cut(s)	179, 298, 524, 1130, 1310, 1316
NciI	CCSGG	2 cut(s)	1325, 1326
NdeII	GATC	4 cut(s)	335, 373, 803, 1071
NlaIII	CATG	4 cut(s)	941, 1033, 1188, 1300
NlaIV	GGNNCC	1 cut(s)	663
NmuCI	GTSAC	1 cut(s)	1217
NspI	RCATGY	1 cut(s)	1300
PciI	ACATGT	1 cut(s)	1296
PciSI	GCTCTTC	1 cut(s)	534
PdmI	GAANNNNTTC	1 cut(s)	528
PfeI	GAWTC	3 cut(s)	32, 743, 968
PflMI	CCANNNNNTGG	1 cut(s)	332
PleI	GAGTC	4 cut(s)	321, 352, 1214, 1283
PmeI	GTTTAAAC	1 cut(s)	582
PpsI	GAGTC	4 cut(s)	321, 352, 1214, 1283
PscI	ACATGT	1 cut(s)	1296
PspN4I	GGNNCC	1 cut(s)	663
PspPI	GGNCC	1 cut(s)	629
PstI	CTGCAG	3 cut(s)	172, 1312, 1321
PstNI	CAGNNNCTG	2 cut(s)	518, 1316
PsuI	RGATCY	2 cut(s)	335, 1071
PvuII	CAGCTG	2 cut(s)	173, 518
RsaI	GTAC	2 cut(s)	601, 1301
RsaNI	GTAC	2 cut(s)	600, 1300
RseI	CAYNNNNRTG	1 cut(s)	426
SapI	GCTCTTC	1 cut(s)	534
SaqAI	TTAA	1 cut(s)	581
Sau3AI	GATC	4 cut(s)	335, 373, 803, 1071
Sau96I	GGNCC	1 cut(s)	629
ScaI	AGTACT	1 cut(s)	601
SchI	GAGTC	4 cut(s)	322, 352, 1214, 1283
ScrFI	CCNGG	2 cut(s)	1325, 1326
SfaNI	GCATC	7 cut(s)	144, 177, 268, 599, 626, 667, 994
SfcI	CTRYAG	3 cut(s)	168, 1308, 1317
SinI	GGWCC	1 cut(s)	629
SmaI	CCCGGG	1 cut(s)	1326
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
Sse9I	AATT	1 cut(s)	1103
SsiI	CCGC	7 cut(s)	101, 330, 543, 563, 996, 1177, 1313
SspI	AATATT	1 cut(s)	987
StyD4I	CCNGG	2 cut(s)	1323, 1324
TaaI	ACNGT	6 cut(s)	23, 78, 123, 1156, 1174, 1209
TaiI	ACGT	1 cut(s)	511
TasI	AATT	1 cut(s)	1103
TatI	WGTACW	1 cut(s)	599
TauI	GCSGC	1 cut(s)	1316
TfiI	GAWTC	3 cut(s)	32, 743, 968
Tru1I	TTAA	1 cut(s)	581
Tru9I	TTAA	1 cut(s)	581
TscAI	CASTG	6 cut(s)	42, 128, 757, 1071, 1177, 1214
TseFI	GTSAC	1 cut(s)	1217
Tsp45I	GTSAC	1 cut(s)	1217
TspDTI	ATGAA	3 cut(s)	371, 839, 1173
TspGWI	ACGGA	1 cut(s)	566
TspMI	CCCGGG	1 cut(s)	1324
TspRI	CASTG	6 cut(s)	42, 128, 757, 1071, 1177, 1214
Van91I	CCANNNNNTGG	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	629
XceI	RCATGY	1 cut(s)	1300
XmaI	CCCGGG	1 cut(s)	1324
XmnI	GAANNNNTTC	1 cut(s)	528
ZrmI	AGTACT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.