Rh4AG146600

polyadenylate-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0004565
Physical Location & Seq
Forward (+)
37048172 .. 37050984
2813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG146600.1

Sequence Viewer

Length: 531 bp
ATGAATGGTGCATATTGTTCGAGCAGGCCCATGCGTATAGGTGTTGCAACGCCAAAAAATCATCTGGATATCAACAACAGATTGGTATTGGCTGGAGGTGGTGGACATGCAAATGGTGCCGTTGCCCAAGGTTCTCAGTCTGATGGCGAGCCCAATAACACAACTATATTTATTGGAGGGCTTGATTCTGATGTCAATGAGGAAGACCTCAGGCAGCCATGTTCTCAATTTGGTGAAGTTGTCTCTGTGAAAATACCGGTTGGAAAAGCATGCGGTTTTGTTCAGTTTGCTAATAGGAAGGATGCTGAGAATGCAATGAATATGCTGAATGCAACTGTTATTGGAAAGCAAACAGTTTGTCTGTCTTGGGGTCGCAGTCAAGGCAACAAGCAGTGGAGATCGGACTCAAGTAACCAATGGAACAATGGAGGACATTATGGAGGGCAGGGGTATGGTGGGTACACAAATGCTGCGCCACAGAATCCAGATCTGAGTATGCATGCTGCAGCTGCGGTTAACGGGTCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

176

Amino Acids

18.44

Weight (kDa)

6.89

Isoelectric Point (pI)

42.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 56 - 118 1.4e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 116
AciI CCGC 2 cut(s) 273, 512
AfaI GTAC 1 cut(s) 461
AgeI ACCGGT 1 cut(s) 256
AluBI AGCT 1 cut(s) 509
AluI AGCT 1 cut(s) 509
Alw26I GTCTC 1 cut(s) 247
AoxI GGCC 1 cut(s) 26
ApeKI GCWGC 5 cut(s) 214, 470, 503, 506, 509
ArsI GACNNNNNNTTYG 2 cut(s) 343, 375
AsiGI ACCGGT 1 cut(s) 256
AspLEI GCGC 1 cut(s) 475
AspS9I GGNCC 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 245
AxyI CCTNAGG 1 cut(s) 209
BanI GGYRCC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 153
BbsI GAAGAC 2 cut(s) 210, 516
BbvI GCAGC 5 cut(s) 226, 457, 490, 496, 518
BccI CCATC 1 cut(s) 137
BceAI ACGGC 1 cut(s) 104
BcgI CGANNNNNNTGC 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 247
BfmI CTRYAG 1 cut(s) 504
BglII AGATCT 1 cut(s) 487
BisI GCNGC 5 cut(s) 215, 471, 504, 507, 510
BlsI GCNGC 5 cut(s) 216, 472, 505, 508, 511
BmgT120I GGNCC 1 cut(s) 27
BmiI GGNNCC 1 cut(s) 118
BmsI GCATC 1 cut(s) 292
BpiI GAAGAC 2 cut(s) 210, 516
BpmI CTGGAG 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 391
BsaJI CCNNGG 1 cut(s) 127
BsaWI WCCGGW 1 cut(s) 256
Bse118I RCCGGY 1 cut(s) 256
Bse21I CCTNAGG 1 cut(s) 209
Bse3DI GCAATG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 307
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 4 cut(s) 149, 223, 297, 482
BseXI GCAGC 5 cut(s) 226, 457, 490, 496, 518
BshFI GGCC 1 cut(s) 28
BshNI GGYRCC 1 cut(s) 116
BshTI ACCGGT 1 cut(s) 256
BsiSI CCGG 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 247
BsmI GAATGC 2 cut(s) 316, 334
BsnI GGCC 1 cut(s) 28
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 2 cut(s) 398, 487
BspACI CCGC 2 cut(s) 273, 512
BspANI GGCC 1 cut(s) 28
BspCNI CTCAG 4 cut(s) 148, 222, 298, 483
BspLI GGNNCC 1 cut(s) 118
BspMAI CTGCAG 1 cut(s) 508
BspT107I GGYRCC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 321
BsrFI RCCGGY 1 cut(s) 256
BssAI RCCGGY 1 cut(s) 256
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 2 cut(s) 398, 487
BssT1I CCWWGG 1 cut(s) 127
Bst4CI ACNGT 2 cut(s) 337, 355
BstAPI GCANNNNNTGC 1 cut(s) 116
BstC8I GCNNGC 4 cut(s) 26, 149, 271, 501
BstDEI CTNAG 4 cut(s) 135, 209, 306, 491
BstF5I GGATG 1 cut(s) 307
BstHHI GCGC 1 cut(s) 475
BstKTI GATC 2 cut(s) 401, 490
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 2 cut(s) 398, 487
BstMWI GCNNNNNNNGC 4 cut(s) 116, 311, 381, 509
BstNSI RCATGY 3 cut(s) 110, 273, 503
BstSFI CTRYAG 1 cut(s) 504
BstV1I GCAGC 5 cut(s) 226, 457, 490, 496, 518
BstV2I GAAGAC 2 cut(s) 210, 516
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
Bsu36I CCTNAGG 1 cut(s) 209
BsuRI GGCC 1 cut(s) 28
BtsCI GGATG 1 cut(s) 307
BtsI GCAGTG 1 cut(s) 398
BtsIMutI CAGTG 1 cut(s) 398
Cac8I GCNNGC 4 cut(s) 26, 149, 271, 501
CfoI GCGC 1 cut(s) 475
Cfr10I RCCGGY 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 27
Csp6I GTAC 1 cut(s) 460
CspAI ACCGGT 1 cut(s) 256
CviAII CATG 5 cut(s) 31, 107, 219, 270, 500
CviJI RGCY 6 cut(s) 28, 92, 151, 181, 217, 509
CviKI_1 RGCY 6 cut(s) 28, 92, 151, 181, 217, 509
CviQI GTAC 1 cut(s) 460
DdeI CTNAG 4 cut(s) 135, 209, 306, 491
DpnI GATC 2 cut(s) 400, 489
DpnII GATC 2 cut(s) 398, 487
Eco130I CCWWGG 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 153
Eco32I GATATC 1 cut(s) 70
Eco81I CCTNAGG 1 cut(s) 209
EcoRV GATATC 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 127
EcoT22I ATGCAT 1 cut(s) 501
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 5 cut(s) 34, 110, 222, 273, 503
FatI CATG 5 cut(s) 30, 106, 218, 269, 499
Fnu4HI GCNGC 5 cut(s) 215, 471, 504, 507, 510
FokI GGATG 1 cut(s) 314
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 5 cut(s) 215, 471, 504, 507, 510
GlaI GCGC 1 cut(s) 474
GluI GCNGC 5 cut(s) 215, 471, 504, 507, 510
GsuI CTGGAG 1 cut(s) 114
HaeIII GGCC 1 cut(s) 28
HapII CCGG 1 cut(s) 257
HhaI GCGC 1 cut(s) 475
Hin1II CATG 5 cut(s) 34, 110, 222, 273, 503
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HinfI GANTC 3 cut(s) 185, 404, 481
HpaI GTTAAC 1 cut(s) 517
HpaII CCGG 1 cut(s) 257
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 3 cut(s) 104, 462, 517
Hpy188I TCNGA 4 cut(s) 142, 190, 403, 492
Hpy188III TCNNGA 2 cut(s) 65, 485
Hpy8I GTNNAC 3 cut(s) 104, 462, 517
HpyAV CCTTC 1 cut(s) 292
HpyCH4III ACNGT 2 cut(s) 337, 355
HpyCH4V TGCA 7 cut(s) 11, 47, 110, 314, 332, 499, 506
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 311, 381, 509
HpyF3I CTNAG 4 cut(s) 135, 209, 306, 491
Hsp92II CATG 5 cut(s) 34, 110, 222, 273, 503
HspAI GCGC 1 cut(s) 473
KspAI GTTAAC 1 cut(s) 517
Kzo9I GATC 2 cut(s) 398, 487
LpnPI CCDG 7 cut(s) 10, 50, 78, 196, 270, 431, 498
Lsp1109I GCAGC 5 cut(s) 226, 457, 490, 496, 518
LweI GCATC 1 cut(s) 292
MaeIII GTNAC 1 cut(s) 410
MalI GATC 2 cut(s) 400, 489
MboI GATC 2 cut(s) 398, 487
MboII GAAGA 2 cut(s) 215, 516
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 1 cut(s) 227
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 6 cut(s) 89, 170, 193, 218, 422, 434
Mph1103I ATGCAT 1 cut(s) 501
MseI TTAA 2 cut(s) 516, 529
MslI CAYNNNNRTG 1 cut(s) 111
MspA1I CMGCKG 1 cut(s) 509
MspI CCGG 1 cut(s) 257
Mva1269I GAATGC 2 cut(s) 316, 334
MwoI GCNNNNNNNGC 4 cut(s) 116, 311, 381, 509
NdeII GATC 2 cut(s) 398, 487
NlaIII CATG 5 cut(s) 34, 110, 222, 273, 503
NlaIV GGNNCC 1 cut(s) 118
NsiI ATGCAT 1 cut(s) 501
NspI RCATGY 3 cut(s) 110, 273, 503
PaeI GCATGC 2 cut(s) 273, 503
PctI GAATGC 2 cut(s) 316, 334
PfeI GAWTC 2 cut(s) 185, 481
PinAI ACCGGT 1 cut(s) 256
PkrI GCNGC 5 cut(s) 216, 472, 505, 508, 511
PleI GAGTC 1 cut(s) 398
PpsI GAGTC 1 cut(s) 398
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 1 cut(s) 27
PstI CTGCAG 1 cut(s) 508
PsuI RGATCY 1 cut(s) 487
PvuII CAGCTG 1 cut(s) 509
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
RseI CAYNNNNRTG 1 cut(s) 111
SaqAI TTAA 2 cut(s) 516, 529
SatI GCNGC 5 cut(s) 215, 471, 504, 507, 510
Sau3AI GATC 2 cut(s) 398, 487
Sau96I GGNCC 1 cut(s) 27
SchI GAGTC 1 cut(s) 398
SduI GDGCHC 1 cut(s) 153
SetI ASST 5 cut(s) 43, 100, 133, 210, 511
SfaNI GCATC 1 cut(s) 292
SfcI CTRYAG 1 cut(s) 504
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
SphI GCATGC 2 cut(s) 273, 503
Sse9I AATT 1 cut(s) 227
SsiI CCGC 2 cut(s) 273, 512
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 2 cut(s) 337, 355
TaqI TCGA 1 cut(s) 20
TasI AATT 1 cut(s) 227
TfiI GAWTC 2 cut(s) 185, 481
Tru1I TTAA 2 cut(s) 516, 529
Tru9I TTAA 2 cut(s) 516, 529
TscAI CASTG 1 cut(s) 398
TseI GCWGC 5 cut(s) 214, 470, 503, 506, 509
TspDTI ATGAA 2 cut(s) 17, 332
TspRI CASTG 1 cut(s) 398
XceI RCATGY 3 cut(s) 110, 273, 503
XcmI CCANNNNNNNNNTGG 1 cut(s) 422
Zsp2I ATGCAT 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.