Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000014.1

Orthogroup ID

OG0004565

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 5890

Gene Structure 5890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000014.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1237 bp

gtctcagtcgcagcagaagatggggcctactgatgaggtcaggaccatctgggctggcgacctgcaccattggatggacgaggcttaccttcatggctgcttcgcctacaccggccaggtttcttcagtaaaggttatacgcaataagcaaacaggtcagacagaagggtatggttttgttgagttctattcacgtgaagcagctgaggaagttctgcagacctataatggtactcctatgccaaatacagagcagccttttcgtctgaactgggcaacctttagtgcgggtgacagacgagcagatactagttctgatctatctatctttgtaggagatttagctacagatgtgactgacactatgttgcaagaaacctttgctagtagatacacatctgttaagggggcaaaagttgttcaagatgcaaataccggtcgttcaaagggttatggttttgttaggtttggggatgaaaatgagaggacaaaggccattgtggaaatgaatggtgcgtattgttcgagcaggcctatgcgtataggtgttgcaacacccaaaaaatcatctggatatcaacaacaatactcttcacaagcattggtattggctggaggtggtggacatgcaaatggtgccatggcccaaggttctcagtctgatggcgagcccaataacacaactatatttgttggagggcttgattctgatgtcaatgaggaagacctcaggcagccgttttctcaatttggtgaagttgtctctgtgaaaataccagttggaaaagcatgcggttttgttcagttcgctaataggaaggatgctgagaatgcaatgaatatgctgaatgcaactgttattggaaagcaaacagttcgtctgtcttggggtcgcagtcaaggcaacaagcagtggagatcggactcaagtaaccagtggaacaatggaggacattatggagggcaggggtatggtgggtacgcaaatgctgcgccacagaatccagatctgagtatgcatgctgcagctgcgattaatggcagttttgtcgaaccttcttcagacagcgatgatcggtctatgtcttgtcctctgttgtttggctctccatccttgaggtatttgatatcaatggttctagaatttggccatctacgtgcgttttctcgttttgtctttgagtttgcacgagggccttgtttttcggaatcaattttggctgaggctcgtgtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

411

Amino Acids

44.78

Weight (kDa)

5.72

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49600 AT1G49600 AT1G49600 AT3G19130
fragaria_vesca	FvH4_2g06660 FvH4_2g06660 FvH4_2g06660
malus_domestica	MD05G1076000.v1.1 MD10G1090700.v1.1
prunus_persica	Prupe.8G119500_v2.0.a1 Prupe.8G119500_v2.0.a1
pyrus_communis	pycom05g06950 pycom10g07420
rosa_chinensis	RchiOBHm_Chr4g0407821 RchiOBHm_Chr6g0258701
rosa_laevigata	RLG00000014588
rosa_multiflora	Rmu_ssc0000014.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352380 Rroxscaffold_7G00206030
rosa_rugosa	Rorug04G0081300 Rorug05G0582900 Rorug05G0583000 Rorug05G0583100
rosa_samantha	Rh4AG146600 Rh4BG144100 Rh4CG153100 Rh4DG140600 Rh6BG091100 Rh6DG082700
rosa_wichuraiana	Rw0G022700 Rw6G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	70
AccB1I	GGYRCC	1 cut(s)	636
AccB7I	CCANNNNNTGG	1 cut(s)	74
AciI	CCGC	2 cut(s)	288, 793
AcoI	YGGCCR	2 cut(s)	113, 1148
AcsI	RAATTY	1 cut(s)	1143
AcuI	CTGAAG	2 cut(s)	109, 1045
AcvI	CACGTG	1 cut(s)	195
AfaI	GTAC	2 cut(s)	233, 981
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgeI	ACCGGT	1 cut(s)	435
AgsI	TTSAA	2 cut(s)	423, 445
AhlI	ACTAGT	1 cut(s)	309
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	3 cut(s)	204, 345, 1029
AluI	AGCT	3 cut(s)	204, 345, 1029
Alw26I	GTCTC	2 cut(s)	7, 767
AoxI	GGCC	7 cut(s)	24, 113, 493, 531, 643, 1148, 1194
ApeKI	GCWGC	9 cut(s)	11, 97, 201, 254, 734, 990, 1023, 1026, 1029
ApoI	RAATTY	1 cut(s)	1143
ArsI	GACNNNNNNTTYG	2 cut(s)	863, 895
AseI	ATTAAT	1 cut(s)	1036
AsiGI	ACCGGT	1 cut(s)	435
AspLEI	GCGC	1 cut(s)	995
AspS9I	GGNCC	4 cut(s)	24, 43, 644, 1194
AsuHPI	GGTGA	2 cut(s)	303, 765
AvaII	GGWCC	1 cut(s)	43
AxyI	CCTNAGG	1 cut(s)	729
BalI	TGGCCA	1 cut(s)	1150
BanI	GGYRCC	1 cut(s)	636
BanII	GRGCYC	1 cut(s)	673
BauI	CACGAG	2 cut(s)	1189, 1228
BbrPI	CACGTG	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	730
BbvCI	CCTCAGC	2 cut(s)	205, 1222
BbvI	GCAGC	9 cut(s)	23, 84, 213, 266, 746, 977, 1010, 1016, 1038
BccI	CCATC	6 cut(s)	14, 54, 68, 657, 1118, 1159
BceAI	ACGGC	1 cut(s)	722
BcgI	CGANNNNNNTGC	6 cut(s)	243, 277, 858, 892, 1031, 1065
BciT130I	CCWGG	1 cut(s)	117
BcoDI	GTCTC	2 cut(s)	7, 767
BcuI	ACTAGT	1 cut(s)	309
BfaI	CTAG	3 cut(s)	310, 385, 1140
BfmI	CTRYAG	3 cut(s)	216, 346, 1024
BfuAI	ACCTGC	1 cut(s)	70
BglII	AGATCT	1 cut(s)	1007
BisI	GCNGC	9 cut(s)	12, 98, 202, 255, 735, 991, 1024, 1027, 1030
BlsI	GCNGC	9 cut(s)	13, 99, 203, 256, 736, 992, 1025, 1028, 1031
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	4 cut(s)	24, 43, 644, 1194
BmiI	GGNNCC	2 cut(s)	25, 638
BmrFI	CCNGG	1 cut(s)	117
BmrI	ACTGGG	1 cut(s)	281
BmsI	GCATC	2 cut(s)	416, 812
BmuI	ACTGGG	1 cut(s)	281
BpiI	GAAGAC	1 cut(s)	730
BpmI	CTGGAG	1 cut(s)	634
Bpu10I	CCTNAGC	2 cut(s)	205, 1222
BpuEI	CTTGAG	2 cut(s)	911, 1136
BsaAI	YACGTR	2 cut(s)	195, 1158
BsaBI	GATNNNNATC	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	640, 647
BsaWI	WCCGGW	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse118I	RCCGGY	2 cut(s)	111, 435
Bse1I	ACTGG	3 cut(s)	276, 777, 935
Bse21I	CCTNAGG	1 cut(s)	729
Bse3DI	GCAATG	1 cut(s)	841
Bse8I	GATNNNNATC	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	2 cut(s)	640, 647
BseGI	GGATG	4 cut(s)	79, 479, 827, 1110
BseJI	GATNNNNATC	1 cut(s)	395
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMI	GCAATG	1 cut(s)	841
BseMII	CTCAG	7 cut(s)	18, 196, 669, 743, 817, 1002, 1213
BseNI	ACTGG	3 cut(s)	276, 777, 935
BseXI	GCAGC	9 cut(s)	23, 84, 213, 266, 746, 977, 1010, 1016, 1038
BsgI	GTGCAG	1 cut(s)	48
Bsh1285I	CGRYCG	1 cut(s)	440
BshFI	GGCC	7 cut(s)	26, 115, 495, 533, 645, 1150, 1196
BshNI	GGYRCC	1 cut(s)	636
BshTI	ACCGGT	1 cut(s)	435
BsiEI	CGRYCG	1 cut(s)	440
BsiSI	CCGG	2 cut(s)	112, 436
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	2 cut(s)	7, 767
BsmI	GAATGC	2 cut(s)	836, 854
BsnI	GGCC	7 cut(s)	26, 115, 495, 533, 645, 1150, 1196
Bsp1286I	GDGCHC	1 cut(s)	673
Bsp143I	GATC	4 cut(s)	317, 918, 1007, 1073
Bsp19I	CCATGG	1 cut(s)	640
BspACI	CCGC	2 cut(s)	288, 793
BspANI	GGCC	7 cut(s)	26, 115, 495, 533, 645, 1150, 1196
BspCNI	CTCAG	7 cut(s)	17, 197, 668, 742, 818, 1003, 1214
BspLI	GGNNCC	2 cut(s)	25, 638
BspMAI	CTGCAG	2 cut(s)	220, 1028
BspMI	ACCTGC	1 cut(s)	70
BspT107I	GGYRCC	1 cut(s)	636
BsrDI	GCAATG	1 cut(s)	841
BsrFI	RCCGGY	2 cut(s)	111, 435
BsrI	ACTGG	3 cut(s)	276, 777, 935
BssAI	RCCGGY	2 cut(s)	111, 435
BssECI	CCNNGG	2 cut(s)	640, 647
BssMI	GATC	4 cut(s)	317, 918, 1007, 1073
BssSI	CACGAG	2 cut(s)	1189, 1228
BssT1I	CCWWGG	2 cut(s)	640, 647
Bst2BI	CACGAG	2 cut(s)	1189, 1228
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	857, 875
Bst6I	CTCTTC	1 cut(s)	596
BstAPI	GCANNNNNTGC	2 cut(s)	636, 990
BstBAI	YACGTR	2 cut(s)	195, 1158
BstC8I	GCNNGC	5 cut(s)	56, 531, 669, 791, 1021
BstDEI	CTNAG	7 cut(s)	4, 205, 655, 729, 826, 1011, 1222
BstDSI	CCRYGG	1 cut(s)	640
BstF5I	GGATG	4 cut(s)	79, 479, 827, 1110
BstHHI	GCGC	1 cut(s)	995
BstKTI	GATC	4 cut(s)	320, 921, 1010, 1076
BstMAI	GTCTC	2 cut(s)	7, 767
BstMBI	GATC	4 cut(s)	317, 918, 1007, 1073
BstMCI	CGRYCG	1 cut(s)	440
BstMWI	GCNNNNNNNGC	5 cut(s)	636, 831, 901, 990, 1029
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	3 cut(s)	630, 793, 1023
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	3 cut(s)	216, 346, 1024
BstV1I	GCAGC	9 cut(s)	23, 84, 213, 266, 746, 977, 1010, 1016, 1038
BstV2I	GAAGAC	1 cut(s)	730
BstX2I	RGATCY	1 cut(s)	1007
BstYI	RGATCY	1 cut(s)	1007
Bsu36I	CCTNAGG	1 cut(s)	729
BsuRI	GGCC	7 cut(s)	26, 115, 495, 533, 645, 1150, 1196
BtgI	CCRYGG	1 cut(s)	640
BtgZI	GCGATG	1 cut(s)	1084
BtsCI	GGATG	4 cut(s)	79, 479, 827, 1110
BtsI	GCAGTG	1 cut(s)	918
BtsIMutI	CAGTG	2 cut(s)	918, 942
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	5 cut(s)	56, 531, 669, 791, 1021
CfoI	GCGC	1 cut(s)	995
Cfr10I	RCCGGY	2 cut(s)	111, 435
Cfr13I	GGNCC	4 cut(s)	24, 43, 644, 1194
Csp6I	GTAC	2 cut(s)	232, 980
CspAI	ACCGGT	1 cut(s)	435
CviAII	CATG	5 cut(s)	93, 627, 641, 790, 1020
CviQI	GTAC	2 cut(s)	232, 980
DdeI	CTNAG	7 cut(s)	4, 205, 655, 729, 826, 1011, 1222
DpnI	GATC	4 cut(s)	319, 920, 1009, 1075
DpnII	GATC	4 cut(s)	317, 918, 1007, 1073
EaeI	YGGCCR	2 cut(s)	113, 1148
Eam1104I	CTCTTC	1 cut(s)	596
EarI	CTCTTC	1 cut(s)	596
Eco130I	CCWWGG	2 cut(s)	640, 647
Eco147I	AGGCCT	1 cut(s)	533
Eco24I	GRGCYC	1 cut(s)	673
Eco32I	GATATC	2 cut(s)	576, 1129
Eco47I	GGWCC	1 cut(s)	43
Eco57I	CTGAAG	2 cut(s)	109, 1045
Eco72I	CACGTG	1 cut(s)	195
Eco81I	CCTNAGG	1 cut(s)	729
EcoO109I	RGGNCCY	2 cut(s)	24, 1194
EcoRII	CCWGG	1 cut(s)	115
EcoRV	GATATC	2 cut(s)	576, 1129
EcoT14I	CCWWGG	2 cut(s)	640, 647
EcoT22I	ATGCAT	1 cut(s)	1021
EcoT38I	GRGCYC	1 cut(s)	673
ErhI	CCWWGG	2 cut(s)	640, 647
FaeI	CATG	5 cut(s)	96, 630, 644, 793, 1023
FatI	CATG	5 cut(s)	92, 626, 640, 789, 1019
FauI	CCCGC	1 cut(s)	281
Fnu4HI	GCNGC	9 cut(s)	12, 98, 202, 255, 735, 991, 1024, 1027, 1030
FokI	GGATG	4 cut(s)	86, 486, 834, 1097
FriOI	GRGCYC	1 cut(s)	673
Fsp4HI	GCNGC	9 cut(s)	12, 98, 202, 255, 735, 991, 1024, 1027, 1030
FspBI	CTAG	3 cut(s)	310, 385, 1140
GlaI	GCGC	1 cut(s)	994
GluI	GCNGC	9 cut(s)	12, 98, 202, 255, 735, 991, 1024, 1027, 1030
GsuI	CTGGAG	1 cut(s)	634
HaeIII	GGCC	7 cut(s)	26, 115, 495, 533, 645, 1150, 1196
HapII	CCGG	2 cut(s)	112, 436
HhaI	GCGC	1 cut(s)	995
Hin1II	CATG	5 cut(s)	96, 630, 644, 793, 1023
Hin6I	GCGC	1 cut(s)	993
HinP1I	GCGC	1 cut(s)	993
HinfI	GANTC	4 cut(s)	705, 924, 1001, 1209
HpaII	CCGG	2 cut(s)	112, 436
HphI	GGTGA	2 cut(s)	303, 765
Hpy166II	GTNNAC	1 cut(s)	624
Hpy188I	TCNGA	9 cut(s)	160, 268, 317, 662, 710, 923, 1012, 1064, 1208
Hpy188III	TCNNGA	5 cut(s)	41, 423, 571, 1005, 1140
Hpy8I	GTNNAC	1 cut(s)	624
HpyAV	CCTTC	4 cut(s)	99, 159, 812, 1066
HpyCH4III	ACNGT	2 cut(s)	857, 875
HpyCH4IV	ACGT	2 cut(s)	194, 1157
HpyF10VI	GCNNNNNNNGC	5 cut(s)	636, 831, 901, 990, 1029
HpyF3I	CTNAG	7 cut(s)	4, 205, 655, 729, 826, 1011, 1222
HpySE526I	ACGT	2 cut(s)	194, 1157
Hsp92II	CATG	5 cut(s)	96, 630, 644, 793, 1023
HspAI	GCGC	1 cut(s)	993
Kzo9I	GATC	4 cut(s)	317, 918, 1007, 1073
Lsp1109I	GCAGC	9 cut(s)	23, 84, 213, 266, 746, 977, 1010, 1016, 1038
LweI	GCATC	2 cut(s)	416, 812
MaeI	CTAG	3 cut(s)	310, 385, 1140
MaeII	ACGT	2 cut(s)	194, 1157
MaeIII	GTNAC	3 cut(s)	291, 353, 930
MalI	GATC	4 cut(s)	319, 920, 1009, 1075
MboI	GATC	4 cut(s)	317, 918, 1007, 1073
MboII	GAAGA	5 cut(s)	29, 115, 583, 735, 1051
MflI	RGATCY	1 cut(s)	1007
MhlI	GDGCHC	1 cut(s)	673
MlsI	TGGCCA	1 cut(s)	1150
MluCI	AATT	3 cut(s)	747, 1143, 1213
MluNI	TGGCCA	1 cut(s)	1150
MlyI	GAGTC	1 cut(s)	918
MmeI	TCCRAC	2 cut(s)	674, 761
Mox20I	TGGCCA	1 cut(s)	1150
Mph1103I	ATGCAT	1 cut(s)	1021
MscI	TGGCCA	1 cut(s)	1150
MseI	TTAA	2 cut(s)	403, 1036
MslI	CAYNNNNRTG	2 cut(s)	631, 1156
Msp20I	TGGCCA	1 cut(s)	1150
MspA1I	CMGCKG	2 cut(s)	204, 1029
MspI	CCGG	2 cut(s)	112, 436
MspR9I	CCNGG	1 cut(s)	117
Mva1269I	GAATGC	2 cut(s)	836, 854
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	5 cut(s)	636, 831, 901, 990, 1029
NcoI	CCATGG	1 cut(s)	640
NdeII	GATC	4 cut(s)	317, 918, 1007, 1073
NlaIII	CATG	5 cut(s)	96, 630, 644, 793, 1023
NlaIV	GGNNCC	2 cut(s)	25, 638
NmuCI	GTSAC	2 cut(s)	291, 353
NsiI	ATGCAT	1 cut(s)	1021
NspI	RCATGY	3 cut(s)	630, 793, 1023
PaeI	GCATGC	2 cut(s)	793, 1023
PceI	AGGCCT	1 cut(s)	533
PctI	GAATGC	2 cut(s)	836, 854
PfeI	GAWTC	3 cut(s)	705, 1001, 1209
PflMI	CCANNNNNTGG	1 cut(s)	74
PinAI	ACCGGT	1 cut(s)	435
PkrI	GCNGC	9 cut(s)	13, 99, 203, 256, 736, 992, 1025, 1028, 1031
PleI	GAGTC	1 cut(s)	918
PmaCI	CACGTG	1 cut(s)	195
PmlI	CACGTG	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	918
Ppu21I	YACGTR	2 cut(s)	195, 1158
PshBI	ATTAAT	1 cut(s)	1036
Psp6I	CCWGG	1 cut(s)	115
PspCI	CACGTG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	2 cut(s)	25, 638
PspPI	GGNCC	4 cut(s)	24, 43, 644, 1194
PstI	CTGCAG	2 cut(s)	220, 1028
PsuI	RGATCY	1 cut(s)	1007
PvuII	CAGCTG	2 cut(s)	204, 1029
RsaI	GTAC	2 cut(s)	233, 981
RsaNI	GTAC	2 cut(s)	232, 980
RseI	CAYNNNNRTG	2 cut(s)	631, 1156
SaqAI	TTAA	2 cut(s)	403, 1036
SatI	GCNGC	9 cut(s)	12, 98, 202, 255, 735, 991, 1024, 1027, 1030
Sau3AI	GATC	4 cut(s)	317, 918, 1007, 1073
Sau96I	GGNCC	4 cut(s)	24, 43, 644, 1194
SchI	GAGTC	1 cut(s)	918
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	673
SfaNI	GCATC	2 cut(s)	416, 812
SfcI	CTRYAG	3 cut(s)	216, 346, 1024
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	2 cut(s)	631, 1156
SmlI	CTYRAG	2 cut(s)	926, 1115
SmoI	CTYRAG	2 cut(s)	926, 1115
SpeI	ACTAGT	1 cut(s)	309
SphI	GCATGC	2 cut(s)	793, 1023
Sse9I	AATT	3 cut(s)	747, 1143, 1213
SseBI	AGGCCT	1 cut(s)	533
SsiI	CCGC	2 cut(s)	288, 793
SspMI	CTAG	3 cut(s)	310, 385, 1140
StuI	AGGCCT	1 cut(s)	533
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	2 cut(s)	640, 647
TaaI	ACNGT	2 cut(s)	857, 875
TaiI	ACGT	2 cut(s)	197, 1160
TaqI	TCGA	2 cut(s)	525, 1051
TaqII	GACCGA	1 cut(s)	1066
TasI	AATT	3 cut(s)	747, 1143, 1213
TfiI	GAWTC	3 cut(s)	705, 1001, 1209
Tru1I	TTAA	2 cut(s)	403, 1036
Tru9I	TTAA	2 cut(s)	403, 1036
TscAI	CASTG	2 cut(s)	918, 942
TseFI	GTSAC	2 cut(s)	291, 353
TseI	GCWGC	9 cut(s)	11, 97, 201, 254, 734, 990, 1023, 1026, 1029
Tsp45I	GTSAC	2 cut(s)	291, 353
TspDTI	ATGAA	4 cut(s)	81, 490, 522, 852
TspRI	CASTG	2 cut(s)	918, 942
Van91I	CCANNNNNTGG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	43
VspI	ATTAAT	1 cut(s)	1036
XapI	RAATTY	1 cut(s)	1143
XbaI	TCTAGA	1 cut(s)	1139
XceI	RCATGY	3 cut(s)	630, 793, 1023
XcmI	CCANNNNNNNNNTGG	1 cut(s)	942
XspI	CTAG	3 cut(s)	310, 385, 1140
Zsp2I	ATGCAT	1 cut(s)	1021

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.