Rh6DG082700

polyadenylate-binding protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
9673744 .. 9680866
7123 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG082700.1

Sequence Viewer

Length: 1353 bp
ATGGCCCAACAGAGCAACGGCGGCAGTGGCGATCTGAGCACGACTCAACAGGCCCAGCCCAACCAGCAGCAGCAGCAACAGCAGCAGCAGCAGTGGATGCATCAGCACCAGCAGCAATGGATGGCGATGCAGTACCCGGCGGCGGCCATGGCGATGATGCAGCAGCAGATGATGGTGTACCCACAGCATTACATGCCTACTTACGCCGCGCATCCGCATCACAATCCCTACCAGCAGGCTCAGGCCGCCGCCGCCGTGGCCTATCAGCAGCAGCCGCCGCTCAAGCAGCAGCAGCAGCAGCAGTCTCAGTCGCAACAGAAGATGGGGCCTACTGATGAGGTCAGGACCATCTGGGCTGGCGACCTGCACCATTGGATGGACGAGGCTTACCTTCATGGCTGCTTCGCCTACACCGGCCAGGTCTCTTCAGTAAAGGTTATACGCAATAAGCAAACAGGTCAGACAGAAGGGTATGGTTTTGTTGAGTTCTATTCACGTGAAGCAGCTGAGGAAGTTCTGCAGACCTATAATGGTACTCCTATGCCAAATACAGAGCAGCCTTTTCGTCTGAACTGGGCAACCTTTAGTGCGGGTGACAGACGAGCAGATACTAGTTCTGATCTATCTATCTTTGTAGGAGATTTAGCTACAGATGTGACTGACACTATGTTGCAAGAAACCTTTGCTAGTAGATATACATCTGTTAAGGGGGCAAAAGTTGTTCAAGATGCAAATACCGGTCGTTCAAAGGGTTATGGTTTTGTTAGGTTTGGGGATGAAAATGAGAGGACAAAGGCCATTGTGGAAATGAATGGTGCGTATTGTTCGAGCAGGCCCATGCGTATAGGTGTTGCAACGCCCAAAAAATCATCTGGATATCAACAACAGTACTCTTCACAAGCGTTGGTATTGGCTGGAGGTGGTGGACATGCAAATGGTGCCATTGCCCAAGGTTCTCAGTCTGATGGCGAGCCCAATAACACAACTATATTTGTTGGAGGGCTTGATTCTGATGTCAATGAGGAAGACCTCAGGCAGCCGTTTTCTCAATTTGGTGAAGTTGTCTCTGTGAAAATACCGGTTGGAAAAGCATGCGGTTTTGTTCAGTTCGCTAATAGGAAGGATGCTGAGAATGCAATGAATATGCTGAATGCAACTGTTATTGGAAAGCAAACAGTTCGTCTGTCTTGGGGTCGCAGTCAAGGCAACAAGCAGTGGAGATCGGACTCAAGTAACCAGTGGAACAATGGAGGACATTATGGAGGGCAGGGGTATGGTGGGTACGCAAATGCTGCGCCACAGAATCCAGATCTGAGTATGCATGCTGCAGCTGCGATTAACGGGTCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

450

Amino Acids

49.45

Weight (kDa)

6.31

Isoelectric Point (pI)

55.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 120 - 184 3.2e-11 RNA recognition motif
RRM_1 PF00076 210 - 280 4.8e-16 RNA recognition motif
RRM_1 PF00076 330 - 393 1.3e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 372
AccB1I GGYRCC 1 cut(s) 938
AccB7I CCANNNNNTGG 1 cut(s) 376
AccBSI CCGCTC 1 cut(s) 280
AccII CGCG 1 cut(s) 209
AcoI YGGCCR 2 cut(s) 144, 415
AcuI CTGAAG 1 cut(s) 411
AcvI CACGTG 1 cut(s) 497
AfaI GTAC 5 cut(s) 134, 179, 535, 890, 1283
AfiI CCNNNNNNNGG 2 cut(s) 142, 376
AgeI ACCGGT 2 cut(s) 737, 1078
AgsI TTSAA 2 cut(s) 725, 747
AhlI ACTAGT 1 cut(s) 611
AjnI CCWGG 1 cut(s) 417
AluBI AGCT 3 cut(s) 506, 647, 1331
AluI AGCT 3 cut(s) 506, 647, 1331
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 3 cut(s) 309, 427, 1069
AoxI GGCC 9 cut(s) 3, 51, 144, 243, 258, 326, 415, 795, 833
ArsI GACNNNNNNTTYG 2 cut(s) 1165, 1197
AsiGI ACCGGT 2 cut(s) 737, 1078
AspLEI GCGC 2 cut(s) 211, 1297
AspS9I GGNCC 5 cut(s) 4, 52, 326, 345, 834
AsuC2I CCSGG 1 cut(s) 137
AsuHPI GGTGA 2 cut(s) 605, 1067
AvaII GGWCC 1 cut(s) 345
AxyI CCTNAGG 1 cut(s) 1031
BanI GGYRCC 1 cut(s) 938
BanII GRGCYC 1 cut(s) 975
BbrPI CACGTG 1 cut(s) 497
BbsI GAAGAC 2 cut(s) 1032, 1338
Bbv12I GWGCWC 1 cut(s) 41
BbvCI CCTCAGC 1 cut(s) 507
BccI CCATC 6 cut(s) 115, 166, 316, 356, 370, 959
BceAI ACGGC 3 cut(s) 34, 239, 1024
BcgI CGANNNNNNTGC 4 cut(s) 545, 579, 1160, 1194
BciT130I CCWGG 1 cut(s) 419
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 3 cut(s) 309, 427, 1069
BcuI ACTAGT 1 cut(s) 611
BfaI CTAG 2 cut(s) 612, 687
BfmI CTRYAG 3 cut(s) 518, 648, 1326
BfuAI ACCTGC 1 cut(s) 372
BglI GCCNNNNNGGC 1 cut(s) 257
BglII AGATCT 1 cut(s) 1309
BmcAI AGTACT 1 cut(s) 890
Bme1390I CCNGG 2 cut(s) 137, 419
Bme18I GGWCC 1 cut(s) 345
BmgT120I GGNCC 5 cut(s) 4, 52, 326, 345, 834
BmiI GGNNCC 2 cut(s) 327, 940
BmrFI CCNGG 2 cut(s) 137, 419
BmrI ACTGGG 1 cut(s) 583
BmsI GCATC 8 cut(s) 87, 109, 117, 147, 220, 226, 718, 1114
BmuI ACTGGG 1 cut(s) 583
BpiI GAAGAC 2 cut(s) 1032, 1338
BplI GAGNNNNNCTC 2 cut(s) 28, 60
BpmI CTGGAG 1 cut(s) 936
Bpu10I CCTNAGC 2 cut(s) 240, 507
BpuEI CTTGAG 2 cut(s) 266, 1213
BpuMI CCSGG 1 cut(s) 137
BsaAI YACGTR 1 cut(s) 497
BsaBI GATNNNNATC 1 cut(s) 697
BsaI GGTCTC 1 cut(s) 427
BsaJI CCNNGG 3 cut(s) 147, 255, 949
BsaWI WCCGGW 2 cut(s) 737, 1078
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 376
Bse118I RCCGGY 3 cut(s) 413, 737, 1078
Bse1I ACTGG 2 cut(s) 578, 1237
Bse21I CCTNAGG 1 cut(s) 1031
Bse3DI GCAATG 3 cut(s) 122, 942, 1143
Bse8I GATNNNNATC 1 cut(s) 697
BseBI CCWGG 1 cut(s) 419
BseDI CCNNGG 3 cut(s) 147, 255, 949
BseGI GGATG 6 cut(s) 102, 126, 211, 381, 781, 1129
BseJI GATNNNNATC 1 cut(s) 697
BseLI CCNNNNNNNGG 2 cut(s) 142, 376
BseMI GCAATG 3 cut(s) 122, 942, 1143
BseMII CTCAG 8 cut(s) 26, 254, 320, 498, 971, 1045, 1119, 1304
BseNI ACTGG 2 cut(s) 578, 1237
BseYI CCCAGC 1 cut(s) 54
BsgI GTGCAG 1 cut(s) 350
Bsh1236I CGCG 1 cut(s) 209
Bsh1285I CGRYCG 1 cut(s) 742
BshFI GGCC 9 cut(s) 5, 53, 146, 245, 260, 328, 417, 797, 835
BshNI GGYRCC 1 cut(s) 938
BshTI ACCGGT 2 cut(s) 737, 1078
BsiEI CGRYCG 1 cut(s) 742
BsiHKAI GWGCWC 1 cut(s) 41
BsiSI CCGG 4 cut(s) 137, 414, 738, 1079
BslI CCNNNNNNNGG 2 cut(s) 142, 376
BsmAI GTCTC 3 cut(s) 309, 427, 1069
BsmI GAATGC 2 cut(s) 1138, 1156
BsnI GGCC 9 cut(s) 5, 53, 146, 245, 260, 328, 417, 797, 835
Bso31I GGTCTC 1 cut(s) 427
Bsp1286I GDGCHC 2 cut(s) 41, 975
Bsp143I GATC 4 cut(s) 31, 619, 1220, 1309
Bsp19I CCATGG 1 cut(s) 147
BspANI GGCC 9 cut(s) 5, 53, 146, 245, 260, 328, 417, 797, 835
BspCNI CTCAG 8 cut(s) 27, 253, 319, 499, 970, 1044, 1120, 1305
BspFNI CGCG 1 cut(s) 209
BspLI GGNNCC 2 cut(s) 327, 940
BspMAI CTGCAG 2 cut(s) 522, 1330
BspMI ACCTGC 1 cut(s) 372
BspT107I GGYRCC 1 cut(s) 938
BspTNI GGTCTC 1 cut(s) 427
BsrBI CCGCTC 1 cut(s) 280
BsrDI GCAATG 3 cut(s) 122, 942, 1143
BsrFI RCCGGY 3 cut(s) 413, 737, 1078
BsrI ACTGG 2 cut(s) 578, 1237
BssAI RCCGGY 3 cut(s) 413, 737, 1078
BssECI CCNNGG 3 cut(s) 147, 255, 949
BssMI GATC 4 cut(s) 31, 619, 1220, 1309
BssT1I CCWWGG 2 cut(s) 147, 949
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 3 cut(s) 888, 1159, 1177
Bst6I CTCTTC 2 cut(s) 430, 898
BstAPI GCANNNNNTGC 4 cut(s) 97, 193, 938, 1292
BstBAI YACGTR 1 cut(s) 497
BstC8I GCNNGC 6 cut(s) 237, 358, 833, 971, 1093, 1323
BstDEI CTNAG 8 cut(s) 35, 240, 306, 507, 957, 1031, 1128, 1313
BstDSI CCRYGG 2 cut(s) 147, 255
BstF5I GGATG 6 cut(s) 102, 126, 211, 381, 781, 1129
BstFNI CGCG 1 cut(s) 209
BstHHI GCGC 2 cut(s) 211, 1297
BstKTI GATC 4 cut(s) 34, 622, 1223, 1312
BstMAI GTCTC 3 cut(s) 309, 427, 1069
BstMBI GATC 4 cut(s) 31, 619, 1220, 1309
BstMCI CGRYCG 1 cut(s) 742
BstNI CCWGG 1 cut(s) 419
BstNSI RCATGY 4 cut(s) 196, 932, 1095, 1325
BstSCI CCNGG 2 cut(s) 135, 417
BstSFI CTRYAG 3 cut(s) 518, 648, 1326
BstUI CGCG 1 cut(s) 209
BstV2I GAAGAC 2 cut(s) 1032, 1338
BstX2I RGATCY 1 cut(s) 1309
BstYI RGATCY 1 cut(s) 1309
Bsu36I CCTNAGG 1 cut(s) 1031
BsuRI GGCC 9 cut(s) 5, 53, 146, 245, 260, 328, 417, 797, 835
BtgI CCRYGG 2 cut(s) 147, 255
BtgZI GCGATG 2 cut(s) 140, 167
BtsCI GGATG 6 cut(s) 102, 126, 211, 381, 781, 1129
BtsI GCAGTG 3 cut(s) 31, 98, 1220
BtsIMutI CAGTG 4 cut(s) 31, 98, 1220, 1244
BveI ACCTGC 1 cut(s) 372
Cac8I GCNNGC 6 cut(s) 237, 358, 833, 971, 1093, 1323
CfoI GCGC 2 cut(s) 211, 1297
Cfr10I RCCGGY 3 cut(s) 413, 737, 1078
Cfr13I GGNCC 5 cut(s) 4, 52, 326, 345, 834
Csp6I GTAC 5 cut(s) 133, 178, 534, 889, 1282
CspAI ACCGGT 2 cut(s) 737, 1078
CviAII CATG 7 cut(s) 148, 193, 395, 838, 929, 1092, 1322
CviQI GTAC 5 cut(s) 133, 178, 534, 889, 1282
DdeI CTNAG 8 cut(s) 35, 240, 306, 507, 957, 1031, 1128, 1313
DpnI GATC 4 cut(s) 33, 621, 1222, 1311
DpnII GATC 4 cut(s) 31, 619, 1220, 1309
EaeI YGGCCR 2 cut(s) 144, 415
Eam1104I CTCTTC 2 cut(s) 430, 898
EarI CTCTTC 2 cut(s) 430, 898
Eco130I CCWWGG 2 cut(s) 147, 949
Eco24I GRGCYC 1 cut(s) 975
Eco31I GGTCTC 1 cut(s) 427
Eco32I GATATC 1 cut(s) 878
Eco47I GGWCC 1 cut(s) 345
Eco57I CTGAAG 1 cut(s) 411
Eco72I CACGTG 1 cut(s) 497
Eco81I CCTNAGG 1 cut(s) 1031
EcoO109I RGGNCCY 1 cut(s) 326
EcoRII CCWGG 1 cut(s) 417
EcoRV GATATC 1 cut(s) 878
EcoT14I CCWWGG 2 cut(s) 147, 949
EcoT22I ATGCAT 2 cut(s) 102, 1323
EcoT38I GRGCYC 1 cut(s) 975
ErhI CCWWGG 2 cut(s) 147, 949
FaeI CATG 7 cut(s) 151, 196, 398, 841, 932, 1095, 1325
FatI CATG 7 cut(s) 147, 192, 394, 837, 928, 1091, 1321
FauI CCCGC 1 cut(s) 583
FokI GGATG 6 cut(s) 109, 133, 198, 388, 788, 1136
FriOI GRGCYC 1 cut(s) 975
FspBI CTAG 2 cut(s) 612, 687
GlaI GCGC 2 cut(s) 210, 1296
GsaI CCCAGC 1 cut(s) 58
GsuI CTGGAG 1 cut(s) 936
HaeIII GGCC 9 cut(s) 5, 53, 146, 245, 260, 328, 417, 797, 835
HapII CCGG 4 cut(s) 137, 414, 738, 1079
HhaI GCGC 2 cut(s) 211, 1297
Hin1II CATG 7 cut(s) 151, 196, 398, 841, 932, 1095, 1325
Hin6I GCGC 2 cut(s) 209, 1295
HinP1I GCGC 2 cut(s) 209, 1295
HinfI GANTC 4 cut(s) 43, 1007, 1226, 1303
HpaII CCGG 4 cut(s) 137, 414, 738, 1079
HphI GGTGA 2 cut(s) 605, 1067
Hpy166II GTNNAC 2 cut(s) 178, 926
Hpy188I TCNGA 8 cut(s) 36, 462, 570, 619, 964, 1012, 1225, 1314
Hpy188III TCNNGA 4 cut(s) 343, 725, 873, 1307
Hpy8I GTNNAC 2 cut(s) 178, 926
HpyAV CCTTC 3 cut(s) 401, 461, 1114
HpyCH4III ACNGT 3 cut(s) 888, 1159, 1177
HpyCH4IV ACGT 1 cut(s) 496
HpyF3I CTNAG 8 cut(s) 35, 240, 306, 507, 957, 1031, 1128, 1313
HpySE526I ACGT 1 cut(s) 496
Hsp92II CATG 7 cut(s) 151, 196, 398, 841, 932, 1095, 1325
HspAI GCGC 2 cut(s) 209, 1295
Kzo9I GATC 4 cut(s) 31, 619, 1220, 1309
LweI GCATC 8 cut(s) 87, 109, 117, 147, 220, 226, 718, 1114
MaeI CTAG 2 cut(s) 612, 687
MaeII ACGT 1 cut(s) 496
MaeIII GTNAC 3 cut(s) 593, 655, 1232
MalI GATC 4 cut(s) 33, 621, 1222, 1311
MbiI CCGCTC 1 cut(s) 280
MboI GATC 4 cut(s) 31, 619, 1220, 1309
MboII GAAGA 5 cut(s) 331, 417, 885, 1037, 1338
MflI RGATCY 1 cut(s) 1309
MhlI GDGCHC 2 cut(s) 41, 975
MluCI AATT 1 cut(s) 1049
MlyI GAGTC 2 cut(s) 37, 1220
MmeI TCCRAC 2 cut(s) 976, 1063
Mph1103I ATGCAT 2 cut(s) 102, 1323
MseI TTAA 3 cut(s) 705, 1338, 1351
MslI CAYNNNNRTG 2 cut(s) 152, 933
MspA1I CMGCKG 2 cut(s) 506, 1331
MspI CCGG 4 cut(s) 137, 414, 738, 1079
MspR9I CCNGG 2 cut(s) 137, 419
Mva1269I GAATGC 2 cut(s) 1138, 1156
MvaI CCWGG 1 cut(s) 419
MvnI CGCG 1 cut(s) 209
NciI CCSGG 1 cut(s) 137
NcoI CCATGG 1 cut(s) 147
NdeII GATC 4 cut(s) 31, 619, 1220, 1309
NlaIII CATG 7 cut(s) 151, 196, 398, 841, 932, 1095, 1325
NlaIV GGNNCC 2 cut(s) 327, 940
NmuCI GTSAC 2 cut(s) 593, 655
NsiI ATGCAT 2 cut(s) 102, 1323
NspI RCATGY 4 cut(s) 196, 932, 1095, 1325
PaeI GCATGC 2 cut(s) 1095, 1325
PctI GAATGC 2 cut(s) 1138, 1156
PfeI GAWTC 2 cut(s) 1007, 1303
PflMI CCANNNNNTGG 1 cut(s) 376
PinAI ACCGGT 2 cut(s) 737, 1078
PleI GAGTC 2 cut(s) 37, 1220
PmaCI CACGTG 1 cut(s) 497
PmlI CACGTG 1 cut(s) 497
PpsI GAGTC 2 cut(s) 37, 1220
Ppu21I YACGTR 1 cut(s) 497
Psp6I CCWGG 1 cut(s) 417
PspCI CACGTG 1 cut(s) 497
PspFI CCCAGC 1 cut(s) 54
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 2 cut(s) 327, 940
PspPI GGNCC 5 cut(s) 4, 52, 326, 345, 834
PstI CTGCAG 2 cut(s) 522, 1330
PsuI RGATCY 1 cut(s) 1309
PvuII CAGCTG 2 cut(s) 506, 1331
RsaI GTAC 5 cut(s) 134, 179, 535, 890, 1283
RsaNI GTAC 5 cut(s) 133, 178, 534, 889, 1282
RseI CAYNNNNRTG 2 cut(s) 152, 933
SaqAI TTAA 3 cut(s) 705, 1338, 1351
Sau3AI GATC 4 cut(s) 31, 619, 1220, 1309
Sau96I GGNCC 5 cut(s) 4, 52, 326, 345, 834
ScaI AGTACT 1 cut(s) 890
SchI GAGTC 2 cut(s) 37, 1220
ScrFI CCNGG 2 cut(s) 137, 419
SduI GDGCHC 2 cut(s) 41, 975
SfaNI GCATC 8 cut(s) 87, 109, 117, 147, 220, 226, 718, 1114
SfcI CTRYAG 3 cut(s) 518, 648, 1326
SinI GGWCC 1 cut(s) 345
SmiMI CAYNNNNRTG 2 cut(s) 152, 933
SmlI CTYRAG 2 cut(s) 281, 1228
SmoI CTYRAG 2 cut(s) 281, 1228
SpeI ACTAGT 1 cut(s) 611
SphI GCATGC 2 cut(s) 1095, 1325
Sse9I AATT 1 cut(s) 1049
SspMI CTAG 2 cut(s) 612, 687
StyD4I CCNGG 2 cut(s) 135, 417
StyI CCWWGG 2 cut(s) 147, 949
TaaI ACNGT 3 cut(s) 888, 1159, 1177
TaiI ACGT 1 cut(s) 499
TaqI TCGA 1 cut(s) 827
TasI AATT 1 cut(s) 1049
TatI WGTACW 1 cut(s) 888
TauI GCSGC 9 cut(s) 24, 143, 146, 209, 248, 251, 254, 277, 280
TfiI GAWTC 2 cut(s) 1007, 1303
Tru1I TTAA 3 cut(s) 705, 1338, 1351
Tru9I TTAA 3 cut(s) 705, 1338, 1351
TscAI CASTG 4 cut(s) 31, 98, 1220, 1244
TseFI GTSAC 2 cut(s) 593, 655
Tsp45I GTSAC 2 cut(s) 593, 655
TspDTI ATGAA 4 cut(s) 383, 792, 824, 1154
TspRI CASTG 4 cut(s) 31, 98, 1220, 1244
Van91I CCANNNNNTGG 1 cut(s) 376
VpaK11BI GGWCC 1 cut(s) 345
XceI RCATGY 4 cut(s) 196, 932, 1095, 1325
XcmI CCANNNNNNNNNTGG 1 cut(s) 1244
XspI CTAG 2 cut(s) 612, 687
ZrmI AGTACT 1 cut(s) 890
Zsp2I ATGCAT 2 cut(s) 102, 1323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.