Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004565

Physical Location & Seq

Genomic Coordinates Reverse (-)

6611182 .. 6614107

Gene Structure 2926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G19130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGCAGACAACCAACGGCTCAGATTCGACGTTGGCAACTTCCGGAGCCACACCGCCGAATCAACAAACCCCTCCTCCACCTCAGCAGTGGCAGCAGCAGCAACAGCAACAGCAACAGTGGATGGCTGCCATGCAATATCCACCAGCGGCGGCGATGATGATGATGCAGCAGCAACAGATGCTGATGTATCCTCATCAATATGTTCCGTATAATCAAGGTCCTTATCAGCAGCATCATCCTCAGCTTCACCAATACGGGTCTTATCAACAGCACCAGCACCAGCAACACAAGGCTATTGACCGTGGATCTGGAGATGATGTCAAGACTCTTTGGGTTGGTGATCTTCTTCATTGGATGGATGAGACTTATCTCCATTCTTGCTTTTCTCACACCGGCGAGGTTTCTTCTGTGAAAGTTATACGTAACAAGCTCACTTCTCAATCAGAAGGGTATGGGTTTGTTGAGTTTCTTTCACGTGCTGCAGCTGAAGAAGTTCTTCAGAACTATAGTGGTTCAGTGATGCCAAACTCGGACCAACCCTTCCGTATAAACTGGGCATCTTTTAGTACTGGTGAAAAAAGAGCAGTGGAAAATGGTCCAGACCTATCTGTTTTTGTGGGAGACTTGTCTCCAGATGTCACTGACGTTTTATTGCATGAGACCTTTTCTGATAGATATCCTTCTGTCAAAAGCGCCAAAGTTGTGATTGATTCCAACACCGGCCGGTCCAAAGGTTATGGTTTTGTGAGGTTCGGTGATGAAAATGAGAGGTCAAGGGCTTTGACAGAAATGAATGGAGCTTACTGTTCGAACAGGCAAATGCGTGTAGGTATTGCAACTCCCAAAAGAGCGATTGCTAATCAGCAACAACATTCTTCACAAGCTGTGATTCTGGCTGGTGGACATGGATCAAATGGTTCCATGGGTTATGGCTCGCAGTCTGATGGCGAATCAACTAACGCAACAATATTTGTTGGCGGCATTGACCCTGATGTTATTGATGAAGACCTCAGACAACCTTTTTCCCAGTTTGGAGAGGTTGTTTCAGTGAAGATCCCAGTAGGGAAAGGATGTGGATTTGTCCAATTTGCTGACAGGAAGAGTGCTGAAGATGCTATCGAGAGTTTGAACGGGACAGTCATCGGCAAGAACACTGTCAGACTCTCCTGGGGACGAAGCCCAAACAAGCAGTGGAGAGGAGACTCAGGGCAGCAGTGGAATGGAGGATACTCACGAGGACATGGTTACAACAATGGAGGAGGATATGCTAACCACCACGACTCCAACAACTATCATGGGGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0008143 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010494 GO:0032991 GO:0033554 GO:0034605 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070717 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

435

Amino Acids

48.12

Weight (kDa)

6.08

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	110 - 176	1e-10	RNA recognition motif
RRM_1	PF00076	204 - 274	3.2e-17	RNA recognition motif
RRM_1	PF00076	323 - 386	9.3e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49600 AT1G49600 AT1G49600 AT3G19130
fragaria_vesca	FvH4_2g06660 FvH4_2g06660 FvH4_2g06660
malus_domestica	MD05G1076000.v1.1 MD10G1090700.v1.1
prunus_persica	Prupe.8G119500_v2.0.a1 Prupe.8G119500_v2.0.a1
pyrus_communis	pycom05g06950 pycom10g07420
rosa_chinensis	RchiOBHm_Chr4g0407821 RchiOBHm_Chr6g0258701
rosa_laevigata	RLG00000014588
rosa_multiflora	Rmu_ssc0000014.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352380 Rroxscaffold_7G00206030
rosa_rugosa	Rorug04G0081300 Rorug05G0582900 Rorug05G0583000 Rorug05G0583100
rosa_samantha	Rh4AG146600 Rh4BG144100 Rh4CG153100 Rh4DG140600 Rh6BG091100 Rh6DG082700
rosa_wichuraiana	Rw0G022700 Rw6G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	41
AciI	CCGC	4 cut(s)	53, 146, 149, 978
AclWI	GGATC	3 cut(s)	313, 916, 1048
AcoI	YGGCCR	1 cut(s)	721
AcuI	CTGAAG	3 cut(s)	482, 507, 1128
AcvI	CACGTG	1 cut(s)	476
AfaI	GTAC	1 cut(s)	568
AgsI	TTSAA	1 cut(s)	1129
AjnI	CCWGG	1 cut(s)	1166
AluBI	AGCT	5 cut(s)	244, 430, 485, 800, 884
AluI	AGCT	5 cut(s)	244, 430, 485, 800, 884
Alw26I	GTCTC	5 cut(s)	356, 615, 633, 653, 1194
AlwI	GGATC	3 cut(s)	313, 916, 1048
AlwNI	CAGNNNCTG	1 cut(s)	181
Aor13HI	TCCGGA	1 cut(s)	41
AoxI	GGCC	1 cut(s)	721
Asp700I	GAANNNNTTC	2 cut(s)	492, 495
AspLEI	GCGC	1 cut(s)	695
AspS9I	GGNCC	4 cut(s)	218, 532, 596, 726
AsuHPI	GGTGA	4 cut(s)	239, 350, 584, 767
AsuII	TTCGAA	1 cut(s)	809
AvaII	GGWCC	4 cut(s)	218, 532, 596, 726
BauI	CACGAG	1 cut(s)	1233
BbrPI	CACGTG	1 cut(s)	476
BbsI	GAAGAC	1 cut(s)	1011
BbvCI	CCTCAGC	2 cut(s)	81, 240
BccI	CCATC	3 cut(s)	115, 349, 938
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	1168
BciVI	GTATCC	2 cut(s)	198, 1220
BcoDI	GTCTC	5 cut(s)	356, 615, 633, 653, 1194
BfmI	CTRYAG	2 cut(s)	480, 505
BfoI	RGCGCY	1 cut(s)	696
BfuI	GTATCC	2 cut(s)	198, 1220
BmcAI	AGTACT	1 cut(s)	568
Bme1390I	CCNGG	1 cut(s)	1168
Bme18I	GGWCC	4 cut(s)	218, 532, 596, 726
BmgT120I	GGNCC	4 cut(s)	218, 532, 596, 726
BmiI	GGNNCC	2 cut(s)	46, 919
BmrFI	CCNGG	1 cut(s)	1168
BmrI	ACTGGG	3 cut(s)	562, 1021, 1052
BmsI	GCATC	6 cut(s)	153, 168, 241, 510, 566, 1102
BmuI	ACTGGG	3 cut(s)	562, 1021, 1052
BpiI	GAAGAC	1 cut(s)	1011
BpmI	CTGGAG	2 cut(s)	330, 615
Bpu10I	CCTNAGC	2 cut(s)	81, 240
Bpu14I	TTCGAA	1 cut(s)	809
BsaAI	YACGTR	2 cut(s)	422, 476
BsaBI	GATNNNNATC	1 cut(s)	675
BsaI	GGTCTC	1 cut(s)	653
BsaJI	CCNNGG	3 cut(s)	301, 921, 1167
BsaWI	WCCGGW	1 cut(s)	41
BsaXI	ACNNNNNCTCC	8 cut(s)	58, 88, 303, 333, 1026, 1056, 1265, 1295
Bse118I	RCCGGY	3 cut(s)	392, 719, 723
Bse1I	ACTGG	4 cut(s)	557, 574, 1027, 1058
Bse8I	GATNNNNATC	1 cut(s)	675
BseAI	TCCGGA	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	1168
BseDI	CCNNGG	3 cut(s)	301, 921, 1167
BseGI	GGATG	5 cut(s)	126, 235, 360, 364, 1076
BseJI	GATNNNNATC	1 cut(s)	675
BseMII	CTCAG	5 cut(s)	33, 95, 254, 1024, 1218
BseNI	ACTGG	4 cut(s)	557, 574, 1027, 1058
BseRI	GAGGAG	3 cut(s)	63, 1212, 1272
BseX3I	CGGCCG	1 cut(s)	721
Bsh1285I	CGRYCG	1 cut(s)	724
BshFI	GGCC	1 cut(s)	723
BsiEI	CGRYCG	1 cut(s)	724
BsiSI	CCGG	4 cut(s)	42, 393, 720, 724
BslFI	GGGAC	2 cut(s)	1147, 1185
BsmAI	GTCTC	5 cut(s)	356, 615, 633, 653, 1194
BsmFI	GGGAC	2 cut(s)	1147, 1185
BsnI	GGCC	1 cut(s)	723
Bso31I	GGTCTC	1 cut(s)	653
Bsp119I	TTCGAA	1 cut(s)	809
Bsp13I	TCCGGA	1 cut(s)	41
Bsp143I	GATC	4 cut(s)	305, 340, 908, 1053
Bsp19I	CCATGG	1 cut(s)	921
BspACI	CCGC	4 cut(s)	53, 146, 149, 978
BspANI	GGCC	1 cut(s)	723
BspCNI	CTCAG	5 cut(s)	32, 94, 253, 1023, 1217
BspEI	TCCGGA	1 cut(s)	41
BspLI	GGNNCC	2 cut(s)	46, 919
BspMAI	CTGCAG	1 cut(s)	484
BspPI	GGATC	3 cut(s)	313, 916, 1048
BspT104I	TTCGAA	1 cut(s)	809
BspTNI	GGTCTC	1 cut(s)	653
BsrFI	RCCGGY	3 cut(s)	392, 719, 723
BsrI	ACTGG	4 cut(s)	557, 574, 1027, 1058
BssAI	RCCGGY	3 cut(s)	392, 719, 723
BssECI	CCNNGG	3 cut(s)	301, 921, 1167
BssMI	GATC	4 cut(s)	305, 340, 908, 1053
BssSI	CACGAG	1 cut(s)	1233
BssT1I	CCWWGG	1 cut(s)	921
Bst2BI	CACGAG	1 cut(s)	1233
Bst2UI	CCWGG	1 cut(s)	1168
Bst4CI	ACNGT	5 cut(s)	117, 302, 806, 1138, 1156
Bst6I	CTCTTC	1 cut(s)	1094
BstAPI	GCANNNNNTGC	1 cut(s)	178
BstBAI	YACGTR	2 cut(s)	422, 476
BstBI	TTCGAA	1 cut(s)	809
BstC8I	GCNNGC	1 cut(s)	935
BstDEI	CTNAG	5 cut(s)	19, 81, 240, 1010, 1204
BstDSI	CCRYGG	2 cut(s)	301, 921
BstF5I	GGATG	5 cut(s)	126, 235, 360, 364, 1076
BstH2I	RGCGCY	1 cut(s)	696
BstHHI	GCGC	1 cut(s)	695
BstKTI	GATC	4 cut(s)	308, 343, 911, 1056
BstMAI	GTCTC	5 cut(s)	356, 615, 633, 653, 1194
BstMBI	GATC	4 cut(s)	305, 340, 908, 1053
BstMCI	CGRYCG	1 cut(s)	724
BstMWI	GCNNNNNNNGC	5 cut(s)	91, 97, 103, 178, 1112
BstNI	CCWGG	1 cut(s)	1168
BstSCI	CCNGG	1 cut(s)	1166
BstSFI	CTRYAG	2 cut(s)	480, 505
BstSNI	TACGTA	1 cut(s)	422
BstV2I	GAAGAC	1 cut(s)	1011
BstX2I	RGATCY	2 cut(s)	305, 1053
BstYI	RGATCY	2 cut(s)	305, 1053
BstZI	CGGCCG	1 cut(s)	721
BsuI	GTATCC	2 cut(s)	198, 1220
BsuRI	GGCC	1 cut(s)	723
BtgI	CCRYGG	2 cut(s)	301, 921
BtgZI	GCGATG	1 cut(s)	167
BtsCI	GGATG	5 cut(s)	126, 235, 360, 364, 1076
BtsI	GCAGTG	4 cut(s)	92, 591, 1196, 1220
BtsIMutI	CAGTG	9 cut(s)	92, 122, 522, 591, 639, 1053, 1152, 1196, 1220
Cac8I	GCNNGC	1 cut(s)	935
CaiI	CAGNNNCTG	1 cut(s)	181
CfoI	GCGC	1 cut(s)	695
Cfr10I	RCCGGY	3 cut(s)	392, 719, 723
Cfr13I	GGNCC	4 cut(s)	218, 532, 596, 726
Csp6I	GTAC	1 cut(s)	567
CviAII	CATG	6 cut(s)	130, 656, 905, 922, 1241, 1295
CviQI	GTAC	1 cut(s)	567
DdeI	CTNAG	5 cut(s)	19, 81, 240, 1010, 1204
DpnI	GATC	4 cut(s)	307, 342, 910, 1055
DpnII	GATC	4 cut(s)	305, 340, 908, 1053
EaeI	YGGCCR	1 cut(s)	721
EagI	CGGCCG	1 cut(s)	721
Eam1104I	CTCTTC	1 cut(s)	1094
EarI	CTCTTC	1 cut(s)	1094
EclXI	CGGCCG	1 cut(s)	721
Eco105I	TACGTA	1 cut(s)	422
Eco130I	CCWWGG	1 cut(s)	921
Eco31I	GGTCTC	1 cut(s)	653
Eco32I	GATATC	1 cut(s)	677
Eco47I	GGWCC	4 cut(s)	218, 532, 596, 726
Eco52I	CGGCCG	1 cut(s)	721
Eco57I	CTGAAG	3 cut(s)	482, 507, 1128
Eco72I	CACGTG	1 cut(s)	476
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	1166
EcoRV	GATATC	1 cut(s)	677
EcoT14I	CCWWGG	1 cut(s)	921
ErhI	CCWWGG	1 cut(s)	921
FaeI	CATG	6 cut(s)	133, 659, 908, 925, 1244, 1298
FalI	AAGNNNNNCTT	2 cut(s)	480, 512
FaqI	GGGAC	2 cut(s)	1147, 1185
FatI	CATG	6 cut(s)	129, 655, 904, 921, 1240, 1294
FokI	GGATG	5 cut(s)	133, 222, 367, 371, 1083
GlaI	GCGC	1 cut(s)	694
GsuI	CTGGAG	2 cut(s)	330, 615
HaeII	RGCGCY	1 cut(s)	696
HaeIII	GGCC	1 cut(s)	723
HapII	CCGG	4 cut(s)	42, 393, 720, 724
HhaI	GCGC	1 cut(s)	695
Hin1II	CATG	6 cut(s)	133, 659, 908, 925, 1244, 1298
Hin6I	GCGC	1 cut(s)	693
HinP1I	GCGC	1 cut(s)	693
HinfI	GANTC	9 cut(s)	23, 58, 325, 710, 889, 950, 1161, 1202, 1280
HpaII	CCGG	4 cut(s)	42, 393, 720, 724
HphI	GGTGA	4 cut(s)	239, 350, 584, 767
Hpy166II	GTNNAC	1 cut(s)	902
Hpy188I	TCNGA	8 cut(s)	22, 445, 501, 532, 670, 943, 1013, 1160
Hpy188III	TCNNGA	7 cut(s)	42, 309, 322, 599, 632, 1120, 1233
Hpy8I	GTNNAC	1 cut(s)	902
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	3 cut(s)	440, 550, 690
HpyCH4III	ACNGT	5 cut(s)	117, 302, 806, 1138, 1156
HpyCH4IV	ACGT	4 cut(s)	29, 421, 475, 645
HpyCH4V	TGCA	6 cut(s)	4, 133, 166, 482, 655, 836
HpyF10VI	GCNNNNNNNGC	5 cut(s)	91, 97, 103, 178, 1112
HpyF3I	CTNAG	5 cut(s)	19, 81, 240, 1010, 1204
HpySE526I	ACGT	4 cut(s)	29, 421, 475, 645
Hsp92II	CATG	6 cut(s)	133, 659, 908, 925, 1244, 1298
HspAI	GCGC	1 cut(s)	693
Kpn2I	TCCGGA	1 cut(s)	41
Kzo9I	GATC	4 cut(s)	305, 340, 908, 1053
LmnI	GCTCC	2 cut(s)	44, 797
LweI	GCATC	6 cut(s)	153, 168, 241, 510, 566, 1102
MaeII	ACGT	4 cut(s)	29, 421, 475, 645
MaeIII	GTNAC	3 cut(s)	422, 637, 1244
MalI	GATC	4 cut(s)	307, 342, 910, 1055
MboI	GATC	4 cut(s)	305, 340, 908, 1053
MflI	RGATCY	2 cut(s)	305, 1053
MluCI	AATT	2 cut(s)	1085, 1303
MlyI	GAGTC	4 cut(s)	319, 1155, 1196, 1274
MmeI	TCCRAC	2 cut(s)	738, 1308
MroI	TCCGGA	1 cut(s)	41
MroXI	GAANNNNTTC	2 cut(s)	492, 495
MslI	CAYNNNNRTG	1 cut(s)	198
MspA1I	CMGCKG	2 cut(s)	146, 485
MspI	CCGG	4 cut(s)	42, 393, 720, 724
MspR9I	CCNGG	1 cut(s)	1168
MvaI	CCWGG	1 cut(s)	1168
MwoI	GCNNNNNNNGC	5 cut(s)	91, 97, 103, 178, 1112
NcoI	CCATGG	1 cut(s)	921
NdeII	GATC	4 cut(s)	305, 340, 908, 1053
NlaIII	CATG	6 cut(s)	133, 659, 908, 925, 1244, 1298
NlaIV	GGNNCC	2 cut(s)	46, 919
NmuCI	GTSAC	1 cut(s)	637
NspV	TTCGAA	1 cut(s)	809
PdmI	GAANNNNTTC	2 cut(s)	492, 495
PfeI	GAWTC	5 cut(s)	23, 58, 710, 889, 950
PleI	GAGTC	4 cut(s)	319, 1155, 1196, 1274
PmaCI	CACGTG	1 cut(s)	476
PmlI	CACGTG	1 cut(s)	476
PpsI	GAGTC	4 cut(s)	319, 1155, 1196, 1274
Ppu21I	YACGTR	2 cut(s)	422, 476
PpuMI	RGGWCCY	1 cut(s)	218
Psp5II	RGGWCCY	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	1166
PspCI	CACGTG	1 cut(s)	476
PspGI	CCWGG	1 cut(s)	1166
PspN4I	GGNNCC	2 cut(s)	46, 919
PspPI	GGNCC	4 cut(s)	218, 532, 596, 726
PspPPI	RGGWCCY	1 cut(s)	218
PstI	CTGCAG	1 cut(s)	484
PstNI	CAGNNNCTG	1 cut(s)	181
PsuI	RGATCY	2 cut(s)	305, 1053
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	1 cut(s)	568
RsaNI	GTAC	1 cut(s)	567
RseI	CAYNNNNRTG	1 cut(s)	198
Sau3AI	GATC	4 cut(s)	305, 340, 908, 1053
Sau96I	GGNCC	4 cut(s)	218, 532, 596, 726
ScaI	AGTACT	1 cut(s)	568
SchI	GAGTC	4 cut(s)	319, 1155, 1196, 1274
ScrFI	CCNGG	1 cut(s)	1168
SfaNI	GCATC	6 cut(s)	153, 168, 241, 510, 566, 1102
SfcI	CTRYAG	2 cut(s)	480, 505
SfuI	TTCGAA	1 cut(s)	809
SgrAI	CRCCGGYG	1 cut(s)	392
SinI	GGWCC	4 cut(s)	218, 532, 596, 726
SmiMI	CAYNNNNRTG	1 cut(s)	198
SnaBI	TACGTA	1 cut(s)	422
Sse9I	AATT	2 cut(s)	1085, 1303
SsiI	CCGC	4 cut(s)	53, 146, 149, 978
SspI	AATATT	1 cut(s)	969
StyD4I	CCNGG	1 cut(s)	1166
StyI	CCWWGG	1 cut(s)	921
TaaI	ACNGT	5 cut(s)	117, 302, 806, 1138, 1156
TaiI	ACGT	4 cut(s)	32, 424, 478, 648
TaqI	TCGA	3 cut(s)	26, 809, 1119
TasI	AATT	2 cut(s)	1085, 1303
TatI	WGTACW	1 cut(s)	566
TauI	GCSGC	3 cut(s)	149, 152, 981
TfiI	GAWTC	5 cut(s)	23, 58, 710, 889, 950
TscAI	CASTG	9 cut(s)	92, 122, 522, 591, 646, 1053, 1159, 1196, 1220
TseFI	GTSAC	1 cut(s)	637
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	4 cut(s)	338, 774, 806, 1017
TspGWI	ACGGA	2 cut(s)	195, 533
TspRI	CASTG	9 cut(s)	92, 122, 522, 591, 646, 1053, 1159, 1196, 1220
VpaK11BI	GGWCC	4 cut(s)	218, 532, 596, 726
XcmI	CCANNNNNNNNNTGG	2 cut(s)	84, 1188
XmnI	GAANNNNTTC	2 cut(s)	492, 495
ZrmI	AGTACT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.