MD05G1076000.v1.1

polyadenylate-binding protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
16290360 .. 16296580
6221 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1076000.v1.1.491

Sequence Viewer

Length: 1344 bp
ATGGCCCAGCAATCTAATGGAGGCACCGATCTGGGCACTCAGCAGCAGCAGCTGCAACAACAACAGCAACAACAGCAGCAGCAGCAGCAACATCAATGGATGCACCAGCAGCAGCAGCAGCAATGGATGGCCATGCAGTACCCGGCCGCGGCGATGGCGATGATGCAGCAGCAGATGATGGTGTACCCGCAGCATTACATGCCATATGCGGCGACTCCCCATCATCCTCACCACAATCCATACCAGCAGCAGCCTCAGGCTGTGGCGTATCAGCAGCATCAGCCGCCGAAGCAGCAGCATTCGCCGTCCCAGAAACAGGGGCCCACCGAGGAGGTCAGGACCATCTGGGTCGGCGACCTTCATCATTGGATGGACGAGACTTACCTTCACGGATGCTTTGCTCACACTGGACAGGTTTCCTCAGTAAAGGTTATACGCAATAAGCAAACTGGTCAGTCAGAGGGATACGGATTTGTTGAGTTCTATTCACGTGAAGTAGCTGAAGAAGTTTTGCAGAACTGTAACGGAGCTCCCATGCCGAATACAGAGCAGCCTTTTCGTTTGAACTGGGCAACCTTCAGTGCTGGTGATAGACGAGCAGAACCTAGTTCTGATCTATCTATCTTTGTAGGAGATTTGGCTACAGATGTGACTGACACTATGTTGCAGGAGACTTTTTCTAGTAGATATTCATCTGTTAAGGGAGCAAAAGTTGTTCTAGATGCAAATACTGGACGTTCAAAAGGTTATGGTTTTGTTAGGTTTGGTGATGAAAATGAGAGGTCAAGGGCCATTGCTGAAATGAATGGTGCGTATTGTTCAAGCAGGGCCATGCGCATAGGTGTTGCAACACCCAAAAAATCACCTGCATATCAGCAACAGTATTCTTCACAAGCATTGGTATTGGCTGGTGGTGGACATGCATCAAATGTTGCCGTCGCCCAAGGGTCCCAGTTTGACAGTGAGCCCAATAACACAACTATATTTGTTGGAGGGCTTGATTCTGAGGTCAATGATGAAGACCTCCGGCAGCCTTTTTCTCATTTCGGTGAAGTTGTCTCTGTGAAAATACCAGTTGGAAAAGCTTGTGGTTTTGTTCAGTTTGCTAATAGGAAGGATGCTGAGAACGCAATACAGATGCTGAATGGAACGGTTATTGGCAAGCAAACAGTTCGACTTTCTTGGGGTCGCAGTCAGGGGAACAAGCAGTGGAGGTCGGATTCAAGTAACCAGTGGAACGGAGCACATTATGGAGGACAGGGCTATGGTGGGTATGGACATGTTGTGCCACAGGGTCAAGACCTGAGCATGCACACTGCAGCTGCAGTTAACGGGACTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

448

Amino Acids

49.61

Weight (kDa)

6.52

Isoelectric Point (pI)

60.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 115 - 182 3.7e-13 RNA recognition motif
RRM_1 PF00076 208 - 278 2.3e-16 RNA recognition motif
RRM_1 PF00076 328 - 391 2e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 874
Acc16I TGCGCA 1 cut(s) 836
Acc36I ACCTGC 1 cut(s) 874
AccB1I GGYRCC 1 cut(s) 23
AccII CGCG 1 cut(s) 149
AciI CCGC 5 cut(s) 147, 149, 188, 209, 284
AcoI YGGCCR 2 cut(s) 129, 144
AcuI CTGAAG 2 cut(s) 522, 562
AcvI CACGTG 1 cut(s) 491
AfaI GTAC 2 cut(s) 140, 185
AfiI CCNNNNNNNGG 2 cut(s) 148, 316
AflIII ACRYGT 1 cut(s) 1279
AgsI TTSAA 4 cut(s) 565, 741, 822, 1224
AluBI AGCT 5 cut(s) 52, 500, 530, 1085, 1322
AluI AGCT 5 cut(s) 52, 500, 530, 1085, 1322
Alw21I GWGCWC 2 cut(s) 532, 1246
Alw26I GTCTC 3 cut(s) 371, 665, 1063
AlwNI CAGNNNCTG 2 cut(s) 52, 1141
AoxI GGCC 6 cut(s) 3, 129, 144, 320, 789, 828
ApaI GGGCCC 1 cut(s) 324
AspLEI GCGC 1 cut(s) 837
AspS9I GGNCC 7 cut(s) 4, 320, 321, 339, 789, 828, 948
AsuC2I CCSGG 1 cut(s) 143
AsuHPI GGTGA 5 cut(s) 221, 599, 779, 855, 1061
AvaII GGWCC 2 cut(s) 339, 948
AxyI CCTNAGG 1 cut(s) 255
BaeGI GKGCMC 2 cut(s) 38, 324
BalI TGGCCA 1 cut(s) 131
BanI GGYRCC 1 cut(s) 23
BanII GRGCYC 3 cut(s) 324, 532, 969
BbrPI CACGTG 1 cut(s) 491
BbsI GAAGAC 1 cut(s) 1026
Bbv12I GWGCWC 2 cut(s) 532, 1246
BccI CCATC 6 cut(s) 121, 148, 172, 228, 350, 364
BceAI ACGGC 2 cut(s) 289, 920
BcgI CGANNNNNNTGC 4 cut(s) 539, 573, 1154, 1188
BciVI GTATCC 1 cut(s) 458
BcnI CCSGG 1 cut(s) 143
BcoDI GTCTC 3 cut(s) 371, 665, 1063
BfaI CTAG 3 cut(s) 606, 681, 719
BfmI CTRYAG 3 cut(s) 642, 1317, 1323
BfuAI ACCTGC 1 cut(s) 874
BfuI GTATCC 1 cut(s) 458
Bme1390I CCNGG 1 cut(s) 143
Bme18I GGWCC 2 cut(s) 339, 948
BmgT120I GGNCC 7 cut(s) 4, 320, 321, 339, 789, 828, 948
BmiI GGNNCC 5 cut(s) 25, 321, 322, 949, 950
BmrFI CCNGG 1 cut(s) 143
BmrI ACTGGG 2 cut(s) 577, 946
BmsI GCATC 8 cut(s) 90, 153, 286, 383, 712, 932, 1108, 1128
BmuI ACTGGG 2 cut(s) 577, 946
BpiI GAAGAC 1 cut(s) 1026
Bpu10I CCTNAGC 1 cut(s) 1304
BpuMI CCSGG 1 cut(s) 143
BsaAI YACGTR 1 cut(s) 491
BsaBI GATNNNNATC 1 cut(s) 691
BsaJI CCNNGG 3 cut(s) 147, 327, 943
BsaXI ACNNNNNCTCC 2 cut(s) 696, 726
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 316
Bse1I ACTGG 7 cut(s) 412, 454, 572, 736, 952, 1073, 1231
Bse21I CCTNAGG 1 cut(s) 255
Bse3DI GCAATG 2 cut(s) 128, 792
Bse8I GATNNNNATC 1 cut(s) 691
BseDI CCNNGG 3 cut(s) 147, 327, 943
BseGI GGATG 6 cut(s) 105, 132, 223, 375, 398, 1123
BseJI GATNNNNATC 1 cut(s) 691
BseLI CCNNNNNNNGG 2 cut(s) 148, 316
BseMI GCAATG 2 cut(s) 128, 792
BseMII CTCAG 6 cut(s) 53, 269, 435, 996, 1113, 1295
BseNI ACTGG 7 cut(s) 412, 454, 572, 736, 952, 1073, 1231
BseRI GAGGAG 1 cut(s) 344
BseSI GKGCMC 2 cut(s) 38, 324
BseX3I CGGCCG 1 cut(s) 144
BseYI CCCAGC 1 cut(s) 6
Bsh1236I CGCG 1 cut(s) 149
Bsh1285I CGRYCG 1 cut(s) 147
BshFI GGCC 6 cut(s) 5, 131, 146, 322, 791, 830
BshNI GGYRCC 1 cut(s) 23
BsiEI CGRYCG 1 cut(s) 147
BsiHKAI GWGCWC 2 cut(s) 532, 1246
BsiSI CCGG 2 cut(s) 143, 1027
BslFI GGGAC 2 cut(s) 292, 934
BslI CCNNNNNNNGG 2 cut(s) 148, 316
BsmAI GTCTC 3 cut(s) 371, 665, 1063
BsmFI GGGAC 2 cut(s) 292, 934
BsmI GAATGC 1 cut(s) 298
BsnI GGCC 6 cut(s) 5, 131, 146, 322, 791, 830
Bsp120I GGGCCC 1 cut(s) 320
Bsp1286I GDGCHC 5 cut(s) 38, 324, 532, 969, 1246
Bsp143I GATC 2 cut(s) 28, 613
BspACI CCGC 5 cut(s) 147, 149, 188, 209, 284
BspANI GGCC 6 cut(s) 5, 131, 146, 322, 791, 830
BspCNI CTCAG 6 cut(s) 52, 268, 434, 997, 1114, 1296
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 5 cut(s) 25, 321, 322, 949, 950
BspMAI CTGCAG 2 cut(s) 1321, 1327
BspMI ACCTGC 1 cut(s) 874
BspT107I GGYRCC 1 cut(s) 23
BsrDI GCAATG 2 cut(s) 128, 792
BsrI ACTGG 7 cut(s) 412, 454, 572, 736, 952, 1073, 1231
BssECI CCNNGG 3 cut(s) 147, 327, 943
BssMI GATC 2 cut(s) 28, 613
BssT1I CCWWGG 1 cut(s) 943
Bst4CI ACNGT 5 cut(s) 521, 882, 962, 1153, 1171
BstAPI GCANNNNNTGC 2 cut(s) 52, 199
BstBAI YACGTR 1 cut(s) 491
BstC8I GCNNGC 2 cut(s) 1163, 1310
BstDEI CTNAG 6 cut(s) 39, 255, 421, 1005, 1122, 1304
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 6 cut(s) 105, 132, 223, 375, 398, 1123
BstFNI CGCG 1 cut(s) 149
BstHHI GCGC 1 cut(s) 837
BstKTI GATC 2 cut(s) 31, 616
BstMAI GTCTC 3 cut(s) 371, 665, 1063
BstMBI GATC 2 cut(s) 28, 613
BstMCI CGRYCG 1 cut(s) 147
BstNSI RCATGY 4 cut(s) 202, 923, 1283, 1312
BstSCI CCNGG 1 cut(s) 141
BstSFI CTRYAG 3 cut(s) 642, 1317, 1323
BstSLI GKGCMC 2 cut(s) 38, 324
BstUI CGCG 1 cut(s) 149
BstV2I GAAGAC 1 cut(s) 1026
BstZI CGGCCG 1 cut(s) 144
Bsu36I CCTNAGG 1 cut(s) 255
BsuI GTATCC 1 cut(s) 458
BsuRI GGCC 6 cut(s) 5, 131, 146, 322, 791, 830
BtgI CCRYGG 1 cut(s) 147
BtgZI GCGATG 2 cut(s) 167, 173
BtsCI GGATG 6 cut(s) 105, 132, 223, 375, 398, 1123
BtsI GCAGTG 2 cut(s) 1214, 1314
BtsIMutI CAGTG 6 cut(s) 405, 586, 967, 1214, 1238, 1314
BveI ACCTGC 1 cut(s) 874
Cac8I GCNNGC 2 cut(s) 1163, 1310
CaiI CAGNNNCTG 2 cut(s) 52, 1141
CfoI GCGC 1 cut(s) 837
Cfr13I GGNCC 7 cut(s) 4, 320, 321, 339, 789, 828, 948
Cfr42I CCGCGG 1 cut(s) 150
Csp6I GTAC 2 cut(s) 139, 184
CviAII CATG 7 cut(s) 133, 199, 535, 832, 920, 1280, 1309
CviQI GTAC 2 cut(s) 139, 184
DdeI CTNAG 6 cut(s) 39, 255, 421, 1005, 1122, 1304
DpnI GATC 2 cut(s) 30, 615
DpnII GATC 2 cut(s) 28, 613
EaeI YGGCCR 2 cut(s) 129, 144
EagI CGGCCG 1 cut(s) 144
Ecl136II GAGCTC 1 cut(s) 530
EclXI CGGCCG 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 943
Eco24I GRGCYC 3 cut(s) 324, 532, 969
Eco47I GGWCC 2 cut(s) 339, 948
Eco52I CGGCCG 1 cut(s) 144
Eco53kI GAGCTC 1 cut(s) 530
Eco57I CTGAAG 2 cut(s) 522, 562
Eco72I CACGTG 1 cut(s) 491
Eco81I CCTNAGG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 530
EcoO109I RGGNCCY 2 cut(s) 320, 948
EcoT14I CCWWGG 1 cut(s) 943
EcoT22I ATGCAT 1 cut(s) 925
EcoT38I GRGCYC 3 cut(s) 324, 532, 969
ErhI CCWWGG 1 cut(s) 943
FaeI CATG 7 cut(s) 136, 202, 538, 835, 923, 1283, 1312
FaqI GGGAC 2 cut(s) 292, 934
FatI CATG 7 cut(s) 132, 198, 534, 831, 919, 1279, 1308
FauI CCCGC 1 cut(s) 195
FauNDI CATATG 1 cut(s) 205
FokI GGATG 6 cut(s) 112, 139, 210, 382, 405, 1130
FriOI GRGCYC 3 cut(s) 324, 532, 969
FspAI RTGCGCAY 1 cut(s) 836
FspBI CTAG 3 cut(s) 606, 681, 719
FspI TGCGCA 1 cut(s) 836
GlaI GCGC 1 cut(s) 836
GsaI CCCAGC 1 cut(s) 10
HaeIII GGCC 6 cut(s) 5, 131, 146, 322, 791, 830
HapII CCGG 2 cut(s) 143, 1027
HhaI GCGC 1 cut(s) 837
Hin1II CATG 7 cut(s) 136, 202, 538, 835, 923, 1283, 1312
Hin6I GCGC 1 cut(s) 835
HinP1I GCGC 1 cut(s) 835
HincII GTYRAC 1 cut(s) 1330
HindII GTYRAC 1 cut(s) 1330
HindIII AAGCTT 1 cut(s) 1083
HinfI GANTC 3 cut(s) 214, 1001, 1220
HpaI GTTAAC 1 cut(s) 1330
HpaII CCGG 2 cut(s) 143, 1027
HphI GGTGA 5 cut(s) 221, 599, 779, 855, 1061
Hpy166II GTNNAC 3 cut(s) 184, 917, 1330
Hpy188I TCNGA 4 cut(s) 460, 613, 1006, 1219
Hpy188III TCNNGA 3 cut(s) 337, 719, 1298
Hpy8I GTNNAC 3 cut(s) 184, 917, 1330
Hpy99I CGWCG 1 cut(s) 941
HpyAV CCTTC 4 cut(s) 368, 395, 586, 1108
HpyCH4III ACNGT 5 cut(s) 521, 882, 962, 1153, 1171
HpyCH4IV ACGT 2 cut(s) 490, 736
HpyF3I CTNAG 6 cut(s) 39, 255, 421, 1005, 1122, 1304
HpySE526I ACGT 2 cut(s) 490, 736
Hsp92II CATG 7 cut(s) 136, 202, 538, 835, 923, 1283, 1312
HspAI GCGC 1 cut(s) 835
KflI GGGWCCC 1 cut(s) 948
KspAI GTTAAC 1 cut(s) 1330
KspI CCGCGG 1 cut(s) 150
Kzo9I GATC 2 cut(s) 28, 613
LmnI GCTCC 4 cut(s) 527, 535, 704, 1241
LweI GCATC 8 cut(s) 90, 153, 286, 383, 712, 932, 1108, 1128
MaeI CTAG 3 cut(s) 606, 681, 719
MaeII ACGT 2 cut(s) 490, 736
MaeIII GTNAC 3 cut(s) 521, 649, 1226
MalI GATC 2 cut(s) 30, 615
MboI GATC 2 cut(s) 28, 613
MboII GAAGA 3 cut(s) 515, 879, 1031
MhlI GDGCHC 5 cut(s) 38, 324, 532, 969, 1246
MlsI TGGCCA 1 cut(s) 131
MluNI TGGCCA 1 cut(s) 131
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 3 cut(s) 970, 1057, 1197
Mox20I TGGCCA 1 cut(s) 131
Mph1103I ATGCAT 1 cut(s) 925
MscI TGGCCA 1 cut(s) 131
MseI TTAA 3 cut(s) 699, 1329, 1342
MslI CAYNNNNRTG 1 cut(s) 1047
Msp20I TGGCCA 1 cut(s) 131
MspA1I CMGCKG 3 cut(s) 52, 149, 1322
MspI CCGG 2 cut(s) 143, 1027
MspR9I CCNGG 1 cut(s) 143
Mva1269I GAATGC 1 cut(s) 298
MvnI CGCG 1 cut(s) 149
NciI CCSGG 1 cut(s) 143
NdeI CATATG 1 cut(s) 205
NdeII GATC 2 cut(s) 28, 613
NlaIII CATG 7 cut(s) 136, 202, 538, 835, 923, 1283, 1312
NlaIV GGNNCC 5 cut(s) 25, 321, 322, 949, 950
NmuCI GTSAC 1 cut(s) 649
NsbI TGCGCA 1 cut(s) 836
NsiI ATGCAT 1 cut(s) 925
NspI RCATGY 4 cut(s) 202, 923, 1283, 1312
PaeI GCATGC 1 cut(s) 1312
PaqCI CACCTGC 1 cut(s) 874
PciI ACATGT 1 cut(s) 1279
PctI GAATGC 1 cut(s) 298
PfeI GAWTC 2 cut(s) 1001, 1220
PleI GAGTC 1 cut(s) 208
PmaCI CACGTG 1 cut(s) 491
PmlI CACGTG 1 cut(s) 491
PpsI GAGTC 1 cut(s) 208
Ppu21I YACGTR 1 cut(s) 491
PpuMI RGGWCCY 1 cut(s) 948
PscI ACATGT 1 cut(s) 1279
Psp124BI GAGCTC 1 cut(s) 532
Psp5II RGGWCCY 1 cut(s) 948
PspCI CACGTG 1 cut(s) 491
PspFI CCCAGC 1 cut(s) 6
PspN4I GGNNCC 5 cut(s) 25, 321, 322, 949, 950
PspOMI GGGCCC 1 cut(s) 320
PspPI GGNCC 7 cut(s) 4, 320, 321, 339, 789, 828, 948
PspPPI RGGWCCY 1 cut(s) 948
PstI CTGCAG 2 cut(s) 1321, 1327
PstNI CAGNNNCTG 2 cut(s) 52, 1141
PvuII CAGCTG 2 cut(s) 52, 1322
RsaI GTAC 2 cut(s) 140, 185
RsaNI GTAC 2 cut(s) 139, 184
RseI CAYNNNNRTG 1 cut(s) 1047
SacI GAGCTC 1 cut(s) 532
SacII CCGCGG 1 cut(s) 150
SaqAI TTAA 3 cut(s) 699, 1329, 1342
Sau3AI GATC 2 cut(s) 28, 613
Sau96I GGNCC 7 cut(s) 4, 320, 321, 339, 789, 828, 948
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 5 cut(s) 38, 324, 532, 969, 1246
SfaNI GCATC 8 cut(s) 90, 153, 286, 383, 712, 932, 1108, 1128
SfcI CTRYAG 3 cut(s) 642, 1317, 1323
Sfr303I CCGCGG 1 cut(s) 150
SgrBI CCGCGG 1 cut(s) 150
SinI GGWCC 2 cut(s) 339, 948
SmiMI CAYNNNNRTG 1 cut(s) 1047
SphI GCATGC 1 cut(s) 1312
SsiI CCGC 5 cut(s) 147, 149, 188, 209, 284
SspMI CTAG 3 cut(s) 606, 681, 719
SstI GAGCTC 1 cut(s) 532
StyD4I CCNGG 1 cut(s) 141
StyI CCWWGG 1 cut(s) 943
TaaI ACNGT 5 cut(s) 521, 882, 962, 1153, 1171
TaiI ACGT 2 cut(s) 493, 739
TaqI TCGA 1 cut(s) 1174
TauI GCSGC 4 cut(s) 149, 152, 212, 286
TfiI GAWTC 2 cut(s) 1001, 1220
Tru1I TTAA 3 cut(s) 699, 1329, 1342
Tru9I TTAA 3 cut(s) 699, 1329, 1342
TscAI CASTG 6 cut(s) 412, 586, 967, 1214, 1238, 1321
TseFI GTSAC 1 cut(s) 649
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 5 cut(s) 350, 681, 786, 818, 1032
TspGWI ACGGA 4 cut(s) 405, 483, 540, 1254
TspRI CASTG 6 cut(s) 412, 586, 967, 1214, 1238, 1321
VpaK11BI GGWCC 2 cut(s) 339, 948
XbaI TCTAGA 1 cut(s) 718
XceI RCATGY 4 cut(s) 202, 923, 1283, 1312
XcmI CCANNNNNNNNNTGG 1 cut(s) 14
XspI CTAG 3 cut(s) 606, 681, 719
Zsp2I ATGCAT 1 cut(s) 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.