Rorug04G0081300

polyadenylate-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004565
Physical Location & Seq
Reverse (-)
12452885 .. 12454981
2097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0081300.1

Sequence Viewer

Length: 603 bp
ATGGATTCACTTCAAGGATTTGGTAGCCCTTCAGACACAAACAGTTCCTCAAGCAACATCAACCTCAACTCTTCTTCCTCATCCTCAACCCCAAGCTCTCCTACTGCCACTCTCAGCCGCTACGAAAACCAAAAGCGGCGAGACTGGAACACCTTCGGTCAGTACCTCAGGAACCACCGGCCGCCGCTATCCCTGTCCCGGTGCAGCGGGGCCCACGTCCTGGAGTTCCTGAGGTACCTTGACCAGTTCGGGAAGACCAAAGTCCACACCCAAATGTGTCCCTTCTTTGGGCACCCAAACCCTCCTGCGCCGTGCCCCTGCCCTCTGCGCCAAGCTTGGGGCAGCCTTGACGCCCTCATCGGCCGCCTCCGTGCCGCCTTTGAAGAGCACGGTGGTAAGCCTGAGGCAAACCCTTTCGGGGCTAGAGCCGTGAGGCTCTATCTCCGCGAGGTTCGCGACTCACAGGCCAAAGCTAGAGGAATCAGCTATGACAAGAAGAAGCGCAAGAGGCCACCGCAGTCAGCTAGTACTACTTCTCTTCAAGCATTAATGCCTCCAACTCCTCCTCCAGCTCCTCCTCCTTCTAGTAGTGCAAGTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

200

Amino Acids

21.92

Weight (kDa)

10.13

Isoelectric Point (pI)

70.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALOG_dom PF04852 29 - 153 2.5e-67 ALOG domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 234
AccB1I GGYRCC 2 cut(s) 234, 291
AccB7I CCANNNNNTGG 1 cut(s) 220
AccII CGCG 2 cut(s) 447, 456
AciI CCGC 9 cut(s) 118, 136, 182, 185, 207, 364, 375, 445, 515
AcoI YGGCCR 2 cut(s) 179, 361
AcuI CTGAAG 1 cut(s) 15
AcyI GRCGYC 1 cut(s) 351
AfaI GTAC 3 cut(s) 164, 236, 529
AfiI CCNNNNNNNGG 6 cut(s) 198, 220, 287, 288, 337, 418
AgsI TTSAA 3 cut(s) 14, 383, 542
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 6 cut(s) 96, 335, 473, 486, 524, 572
AluI AGCT 6 cut(s) 96, 335, 473, 486, 524, 572
Alw21I GWGCWC 1 cut(s) 390
Alw26I GTCTC 1 cut(s) 135
AoxI GGCC 5 cut(s) 179, 210, 361, 465, 509
ApaI GGGCCC 1 cut(s) 214
ApeKI GCWGC 2 cut(s) 204, 342
AseI ATTAAT 1 cut(s) 548
Asp700I GAANNNNTTC 1 cut(s) 152
Asp718I GGTACC 1 cut(s) 234
AspLEI GCGC 3 cut(s) 310, 330, 504
AspS9I GGNCC 2 cut(s) 210, 211
AsuC2I CCSGG 1 cut(s) 199
AxyI CCTNAGG 3 cut(s) 167, 230, 402
BaeGI GKGCMC 3 cut(s) 214, 294, 317
BanI GGYRCC 2 cut(s) 234, 291
BanII GRGCYC 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 390
BbvI GCAGC 2 cut(s) 216, 354
BceAI ACGGC 2 cut(s) 295, 413
BciT130I CCWGG 1 cut(s) 221
BcnI CCSGG 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 4 cut(s) 423, 474, 525, 585
BisI GCNGC 8 cut(s) 118, 137, 182, 185, 205, 343, 364, 375
BlsI GCNGC 8 cut(s) 119, 138, 183, 186, 206, 344, 365, 376
BmcAI AGTACT 1 cut(s) 529
Bme1390I CCNGG 2 cut(s) 199, 221
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 2 cut(s) 210, 211
BmiI GGNNCC 5 cut(s) 173, 211, 212, 236, 293
BmrFI CCNGG 2 cut(s) 199, 221
BoxI GACNNNNGTC 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 260
BpmI CTGGAG 2 cut(s) 242, 552
BpuEI CTTGAG 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 199
BsaHI GRCGYC 1 cut(s) 351
BsaXI ACNNNNNCTCC 2 cut(s) 550, 580
Bsc4I CCNNNNNNNGG 6 cut(s) 198, 220, 287, 288, 337, 418
Bse118I RCCGGY 1 cut(s) 177
Bse1I ACTGG 2 cut(s) 149, 244
Bse21I CCTNAGG 3 cut(s) 167, 230, 402
BseBI CCWGG 1 cut(s) 221
BseGI GGATG 1 cut(s) 80
BseLI CCNNNNNNNGG 6 cut(s) 198, 220, 287, 288, 337, 418
BseMII CTCAG 4 cut(s) 127, 181, 221, 393
BseNI ACTGG 2 cut(s) 149, 244
BseRI GAGGAG 4 cut(s) 552, 555, 564, 567
BseSI GKGCMC 3 cut(s) 214, 294, 317
BseX3I CGGCCG 2 cut(s) 179, 361
BseXI GCAGC 2 cut(s) 216, 354
BsgI GTGCAG 1 cut(s) 223
Bsh1236I CGCG 2 cut(s) 447, 456
Bsh1285I CGRYCG 2 cut(s) 182, 364
BshFI GGCC 5 cut(s) 181, 212, 363, 467, 511
BshNI GGYRCC 2 cut(s) 234, 291
BsiEI CGRYCG 2 cut(s) 182, 364
BsiHKAI GWGCWC 1 cut(s) 390
BsiSI CCGG 2 cut(s) 178, 199
BslFI GGGAC 2 cut(s) 181, 264
BslI CCNNNNNNNGG 6 cut(s) 198, 220, 287, 288, 337, 418
BsmAI GTCTC 1 cut(s) 135
BsmFI GGGAC 2 cut(s) 181, 264
BsnI GGCC 5 cut(s) 181, 212, 363, 467, 511
Bsp120I GGGCCC 1 cut(s) 210
Bsp1286I GDGCHC 4 cut(s) 214, 294, 317, 390
Bsp68I TCGCGA 1 cut(s) 456
BspACI CCGC 9 cut(s) 118, 136, 182, 185, 207, 364, 375, 445, 515
BspANI GGCC 5 cut(s) 181, 212, 363, 467, 511
BspCNI CTCAG 4 cut(s) 126, 180, 222, 394
BspFNI CGCG 2 cut(s) 447, 456
BspLI GGNNCC 5 cut(s) 173, 211, 212, 236, 293
BspQI GCTCTTC 1 cut(s) 378
BspT107I GGYRCC 2 cut(s) 234, 291
BsrFI RCCGGY 1 cut(s) 177
BsrI ACTGG 2 cut(s) 149, 244
BssAI RCCGGY 1 cut(s) 177
BssNI GRCGYC 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 2 cut(s) 44, 392
Bst6I CTCTTC 3 cut(s) 76, 378, 543
BstACI GRCGYC 1 cut(s) 351
BstDEI CTNAG 4 cut(s) 113, 167, 230, 402
BstF5I GGATG 1 cut(s) 80
BstFNI CGCG 2 cut(s) 447, 456
BstHHI GCGC 3 cut(s) 310, 330, 504
BstMAI GTCTC 1 cut(s) 135
BstMCI CGRYCG 2 cut(s) 182, 364
BstMWI GCNNNNNNNGC 3 cut(s) 327, 453, 508
BstNI CCWGG 1 cut(s) 221
BstPAI GACNNNNGTC 1 cut(s) 260
BstSCI CCNGG 2 cut(s) 197, 219
BstSLI GKGCMC 3 cut(s) 214, 294, 317
BstUI CGCG 2 cut(s) 447, 456
BstV1I GCAGC 2 cut(s) 216, 354
BstV2I GAAGAC 1 cut(s) 260
BstZI CGGCCG 2 cut(s) 179, 361
Bsu36I CCTNAGG 3 cut(s) 167, 230, 402
BsuRI GGCC 5 cut(s) 181, 212, 363, 467, 511
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 1 cut(s) 80
BtuMI TCGCGA 1 cut(s) 456
CfoI GCGC 3 cut(s) 310, 330, 504
Cfr10I RCCGGY 1 cut(s) 177
Cfr13I GGNCC 2 cut(s) 210, 211
CseI GACGC 1 cut(s) 359
Csp6I GTAC 3 cut(s) 163, 235, 528
CviQI GTAC 3 cut(s) 163, 235, 528
DdeI CTNAG 4 cut(s) 113, 167, 230, 402
EaeI YGGCCR 2 cut(s) 179, 361
EagI CGGCCG 2 cut(s) 179, 361
Eam1104I CTCTTC 3 cut(s) 76, 378, 543
EarI CTCTTC 3 cut(s) 76, 378, 543
EclXI CGGCCG 2 cut(s) 179, 361
Eco24I GRGCYC 1 cut(s) 214
Eco52I CGGCCG 2 cut(s) 179, 361
Eco57I CTGAAG 1 cut(s) 15
Eco81I CCTNAGG 3 cut(s) 167, 230, 402
EcoO109I RGGNCCY 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 219
EcoT38I GRGCYC 1 cut(s) 214
FaiI YATR 1 cut(s) 489
FaqI GGGAC 2 cut(s) 181, 264
FauI CCCGC 1 cut(s) 200
Fnu4HI GCNGC 8 cut(s) 118, 137, 182, 185, 205, 343, 364, 375
FokI GGATG 1 cut(s) 67
FriOI GRGCYC 1 cut(s) 214
Fsp4HI GCNGC 8 cut(s) 118, 137, 182, 185, 205, 343, 364, 375
FspBI CTAG 4 cut(s) 423, 474, 525, 585
GlaI GCGC 3 cut(s) 309, 329, 503
GluI GCNGC 8 cut(s) 118, 137, 182, 185, 205, 343, 364, 375
GsuI CTGGAG 2 cut(s) 242, 552
HaeIII GGCC 5 cut(s) 181, 212, 363, 467, 511
HapII CCGG 2 cut(s) 178, 199
HgaI GACGC 1 cut(s) 359
HhaI GCGC 3 cut(s) 310, 330, 504
Hin1I GRCGYC 1 cut(s) 351
Hin6I GCGC 3 cut(s) 308, 328, 502
HinP1I GCGC 3 cut(s) 308, 328, 502
HindIII AAGCTT 1 cut(s) 333
HinfI GANTC 3 cut(s) 5, 458, 480
HpaII CCGG 2 cut(s) 178, 199
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 4 cut(s) 169, 229, 250, 455
Hpy8I GTNNAC 1 cut(s) 265
HpyAV CCTTC 4 cut(s) 39, 163, 292, 591
HpyCH4III ACNGT 2 cut(s) 44, 392
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 2 cut(s) 204, 593
HpyF10VI GCNNNNNNNGC 3 cut(s) 327, 453, 508
HpyF3I CTNAG 4 cut(s) 113, 167, 230, 402
HpySE526I ACGT 1 cut(s) 216
Hsp92I GRCGYC 1 cut(s) 351
HspAI GCGC 3 cut(s) 308, 328, 502
KpnI GGTACC 1 cut(s) 238
LguI GCTCTTC 1 cut(s) 378
LmnI GCTCC 1 cut(s) 577
Lsp1109I GCAGC 2 cut(s) 216, 354
MaeI CTAG 4 cut(s) 423, 474, 525, 585
MaeII ACGT 1 cut(s) 216
MboII GAAGA 6 cut(s) 63, 66, 265, 395, 508, 530
MhlI GDGCHC 4 cut(s) 214, 294, 317, 390
MlyI GAGTC 1 cut(s) 452
MmeI TCCRAC 1 cut(s) 581
MroXI GAANNNNTTC 1 cut(s) 152
MseI TTAA 1 cut(s) 548
MslI CAYNNNNRTG 1 cut(s) 272
MspA1I CMGCKG 1 cut(s) 207
MspI CCGG 2 cut(s) 178, 199
MspR9I CCNGG 2 cut(s) 199, 221
MvaI CCWGG 1 cut(s) 221
MvnI CGCG 2 cut(s) 447, 456
MwoI GCNNNNNNNGC 3 cut(s) 327, 453, 508
NciI CCSGG 1 cut(s) 199
NlaIV GGNNCC 5 cut(s) 173, 211, 212, 236, 293
NruI TCGCGA 1 cut(s) 456
PciSI GCTCTTC 1 cut(s) 378
PdmI GAANNNNTTC 1 cut(s) 152
PfeI GAWTC 2 cut(s) 5, 480
PflMI CCANNNNNTGG 1 cut(s) 220
PfoI TCCNGGA 1 cut(s) 219
PkrI GCNGC 8 cut(s) 119, 138, 183, 186, 206, 344, 365, 376
PleI GAGTC 1 cut(s) 452
PpsI GAGTC 1 cut(s) 452
PshAI GACNNNNGTC 1 cut(s) 260
PshBI ATTAAT 1 cut(s) 548
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 5 cut(s) 173, 211, 212, 236, 293
PspOMI GGGCCC 1 cut(s) 210
PspPI GGNCC 2 cut(s) 210, 211
RruI TCGCGA 1 cut(s) 456
RsaI GTAC 3 cut(s) 164, 236, 529
RsaNI GTAC 3 cut(s) 163, 235, 528
RseI CAYNNNNRTG 1 cut(s) 272
SapI GCTCTTC 1 cut(s) 378
SaqAI TTAA 1 cut(s) 548
SatI GCNGC 8 cut(s) 118, 137, 182, 185, 205, 343, 364, 375
Sau96I GGNCC 2 cut(s) 210, 211
ScaI AGTACT 1 cut(s) 529
SchI GAGTC 1 cut(s) 452
ScrFI CCNGG 2 cut(s) 199, 221
SduI GDGCHC 4 cut(s) 214, 294, 317, 390
SmiMI CAYNNNNRTG 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
SsiI CCGC 9 cut(s) 118, 136, 182, 185, 207, 364, 375, 445, 515
SspMI CTAG 4 cut(s) 423, 474, 525, 585
StyD4I CCNGG 2 cut(s) 197, 219
TaaI ACNGT 2 cut(s) 44, 392
TaiI ACGT 1 cut(s) 219
TaqII GACCGA 1 cut(s) 146
TatI WGTACW 1 cut(s) 527
TauI GCSGC 6 cut(s) 120, 139, 184, 187, 366, 377
TfiI GAWTC 2 cut(s) 5, 480
Tru1I TTAA 1 cut(s) 548
Tru9I TTAA 1 cut(s) 548
TseI GCWGC 2 cut(s) 204, 342
TspGWI ACGGA 1 cut(s) 359
Van91I CCANNNNNTGG 1 cut(s) 220
VspI ATTAAT 1 cut(s) 548
XmnI GAANNNNTTC 1 cut(s) 152
XspI CTAG 4 cut(s) 423, 474, 525, 585
ZrmI AGTACT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.