Rroxscaffold_7G00206030

polyadenylate-binding protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
55697044 .. 55702661
5618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00206030.1

Sequence Viewer

Length: 1341 bp
ATGGCCCAACAGACCAACGGCGGCGGCGGCGGCGATCTGAGCACGACTCAACAGGCCCAGCCCAACCAGCAACAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGTGGATGCATCAGCACCAGCAGCAATGGATGGCGATGCAGTACCCGGCGGCGGCCATGGCGATGATGCAGCAGCAGATGATGGTGTACCCGCAGCATTACATGCCTACTTACGCCGCGCATCCGCATCACAATCCCTACCAGCAGGCTCAGGCGGCCGCCGCCGTGGCCTATCAGCAGCAGCCGCCGCTCAAGCAGCAGCAGCAGTCTCAGTCGCAGCAGAAGATGGGGCCTACTGATGAGGTCAGGACCATCTGGGCTGGCGACCTGCACCATTGGATGGACGAGGCTTACCTTCATGGCTGCTTCGCCTACACCGGCCAGGTTTCTTCAGTAAAGGTTATACGCAATAAGCAAACAGGTCAGACAGAAGGGTATGGTTTTGTTGAGTTCTATTCACGTGAAGCAGCTGAGGAAGTTCTGCAGACCTATAATGGTACTCCTATGCCAAATACAGAGCAGCCTTTTCGTCTGAACTGGGCAACCTTTAGTGCGGGTGACAGACGAGCAGATACTAGTTCTGATCTATCTATATTTGTAGGAGATTTAGCTACAGATGTGACTGACACTATGTTGCAAGAAACCTTTGCTAGTAGATATACATCTGTTAAGGGGGCAAAAGTTGTTCAAGATGCAAATACTGGTCGTTCAAAGGGTTATGGTTTTGTTAGGTTTGGGGATGAAAATGAGAGGACAAAGGCCATTGTGGAAATGAATGGTGCGTATTGTTCGAGCAGGCCCATGCGTATAGGTGTTGCAACGCCCAAAAAATCATCTGGATATCAACAACAATACTCTTCACAAGGTGGTGGACATGCAAATGGTGCCATTGCCCAAGGTTCTCAGTCTGATGGCGAGCCCAATAACACAACTATATTTGTTGGAGGGCTTGATTCTGATGTCAATGAGGAAGACCTCAGGCAGCCGTTTTCTCAATTTGGTGAAGTTGTCTCTGTGAAAATACCGGTTGGAAAAGCATGCGGTTTTGTTCAGTTCGCTAATAGGAAGGATGCTGAGAATGCAATGAATATGCTGAATGCAACTGTTATTGGAAAGCAAACAGTTCGTCTGTCTTGGGGTCGCAGTCAAGGCAACAAGCAGTGGAGATCGGACTCAAGTAACCAGTGGAACAATGGAGGACATTATGGAGGGCAGGGGTATGGTGGGTACGCAAATGCTGCGCCACAGAATCCAGATCTGAGTATGCATGCTGCAGCTGCGATTAACGGGTCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

446

Amino Acids

49.09

Weight (kDa)

6.31

Isoelectric Point (pI)

55.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 122 - 186 3.2e-11 RNA recognition motif
RRM_1 PF00076 212 - 282 4.8e-16 RNA recognition motif
RRM_1 PF00076 326 - 389 1.3e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 378
AccB1I GGYRCC 1 cut(s) 926
AccB7I CCANNNNNTGG 1 cut(s) 382
AccBSI CCGCTC 1 cut(s) 292
AccII CGCG 1 cut(s) 221
AcoI YGGCCR 3 cut(s) 156, 258, 421
AcuI CTGAAG 1 cut(s) 417
AcvI CACGTG 1 cut(s) 503
AdeI CACNNNGTG 1 cut(s) 908
AfaI GTAC 4 cut(s) 146, 191, 541, 1271
AfiI CCNNNNNNNGG 2 cut(s) 154, 382
AgeI ACCGGT 1 cut(s) 1066
AgsI TTSAA 2 cut(s) 731, 753
AhlI ACTAGT 1 cut(s) 617
AjnI CCWGG 1 cut(s) 423
AluBI AGCT 3 cut(s) 512, 653, 1319
AluI AGCT 3 cut(s) 512, 653, 1319
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 2 cut(s) 315, 1057
AoxI GGCC 9 cut(s) 3, 54, 156, 258, 270, 332, 421, 801, 839
ArsI GACNNNNNNTTYG 2 cut(s) 1153, 1185
AsiGI ACCGGT 1 cut(s) 1066
AspLEI GCGC 2 cut(s) 223, 1285
AspS9I GGNCC 5 cut(s) 4, 55, 332, 351, 840
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 2 cut(s) 611, 1055
AvaII GGWCC 1 cut(s) 351
AxyI CCTNAGG 1 cut(s) 1019
BanI GGYRCC 1 cut(s) 926
BanII GRGCYC 1 cut(s) 963
BbrPI CACGTG 1 cut(s) 503
BbsI GAAGAC 2 cut(s) 1020, 1326
Bbv12I GWGCWC 1 cut(s) 44
BbvCI CCTCAGC 1 cut(s) 513
BccI CCATC 6 cut(s) 127, 178, 322, 362, 376, 947
BceAI ACGGC 3 cut(s) 34, 251, 1012
BcgI CGANNNNNNTGC 4 cut(s) 551, 585, 1148, 1182
BciT130I CCWGG 1 cut(s) 425
BcnI CCSGG 1 cut(s) 149
BcoDI GTCTC 2 cut(s) 315, 1057
BcuI ACTAGT 1 cut(s) 617
BfaI CTAG 2 cut(s) 618, 693
BfmI CTRYAG 3 cut(s) 524, 654, 1314
BfuAI ACCTGC 1 cut(s) 378
BglI GCCNNNNNGGC 1 cut(s) 269
BglII AGATCT 1 cut(s) 1297
Bme1390I CCNGG 2 cut(s) 149, 425
Bme18I GGWCC 1 cut(s) 351
BmgT120I GGNCC 5 cut(s) 4, 55, 332, 351, 840
BmiI GGNNCC 2 cut(s) 333, 928
BmrFI CCNGG 2 cut(s) 149, 425
BmrI ACTGGG 1 cut(s) 589
BmsI GCATC 8 cut(s) 99, 121, 129, 159, 232, 238, 724, 1102
BmuI ACTGGG 1 cut(s) 589
BpiI GAAGAC 2 cut(s) 1020, 1326
BplI GAGNNNNNCTC 2 cut(s) 31, 63
Bpu10I CCTNAGC 2 cut(s) 252, 513
BpuEI CTTGAG 2 cut(s) 278, 1201
BpuMI CCSGG 1 cut(s) 149
BsaAI YACGTR 1 cut(s) 503
BsaBI GATNNNNATC 1 cut(s) 703
BsaJI CCNNGG 3 cut(s) 159, 267, 937
BsaWI WCCGGW 1 cut(s) 1066
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 382
Bse118I RCCGGY 2 cut(s) 419, 1066
Bse1I ACTGG 3 cut(s) 584, 748, 1225
Bse21I CCTNAGG 1 cut(s) 1019
Bse3DI GCAATG 3 cut(s) 134, 930, 1131
Bse8I GATNNNNATC 1 cut(s) 703
BseBI CCWGG 1 cut(s) 425
BseDI CCNNGG 3 cut(s) 159, 267, 937
BseGI GGATG 6 cut(s) 114, 138, 223, 387, 787, 1117
BseJI GATNNNNATC 1 cut(s) 703
BseLI CCNNNNNNNGG 2 cut(s) 154, 382
BseMI GCAATG 3 cut(s) 134, 930, 1131
BseMII CTCAG 8 cut(s) 29, 266, 326, 504, 959, 1033, 1107, 1292
BseNI ACTGG 3 cut(s) 584, 748, 1225
BseX3I CGGCCG 1 cut(s) 258
BseYI CCCAGC 1 cut(s) 57
BsgI GTGCAG 1 cut(s) 356
Bsh1236I CGCG 1 cut(s) 221
Bsh1285I CGRYCG 1 cut(s) 261
BshFI GGCC 9 cut(s) 5, 56, 158, 260, 272, 334, 423, 803, 841
BshNI GGYRCC 1 cut(s) 926
BshTI ACCGGT 1 cut(s) 1066
BsiEI CGRYCG 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 44
BsiSI CCGG 3 cut(s) 149, 420, 1067
BslI CCNNNNNNNGG 2 cut(s) 154, 382
BsmAI GTCTC 2 cut(s) 315, 1057
BsmI GAATGC 2 cut(s) 1126, 1144
BsnI GGCC 9 cut(s) 5, 56, 158, 260, 272, 334, 423, 803, 841
Bsp1286I GDGCHC 2 cut(s) 44, 963
Bsp143I GATC 4 cut(s) 34, 625, 1208, 1297
Bsp19I CCATGG 1 cut(s) 159
BspANI GGCC 9 cut(s) 5, 56, 158, 260, 272, 334, 423, 803, 841
BspCNI CTCAG 8 cut(s) 30, 265, 325, 505, 958, 1032, 1108, 1293
BspFNI CGCG 1 cut(s) 221
BspLI GGNNCC 2 cut(s) 333, 928
BspMAI CTGCAG 2 cut(s) 528, 1318
BspMI ACCTGC 1 cut(s) 378
BspT107I GGYRCC 1 cut(s) 926
BsrBI CCGCTC 1 cut(s) 292
BsrDI GCAATG 3 cut(s) 134, 930, 1131
BsrFI RCCGGY 2 cut(s) 419, 1066
BsrI ACTGG 3 cut(s) 584, 748, 1225
BssAI RCCGGY 2 cut(s) 419, 1066
BssECI CCNNGG 3 cut(s) 159, 267, 937
BssMI GATC 4 cut(s) 34, 625, 1208, 1297
BssT1I CCWWGG 2 cut(s) 159, 937
Bst2UI CCWGG 1 cut(s) 425
Bst4CI ACNGT 2 cut(s) 1147, 1165
Bst6I CTCTTC 1 cut(s) 904
BstAPI GCANNNNNTGC 4 cut(s) 109, 205, 926, 1280
BstBAI YACGTR 1 cut(s) 503
BstC8I GCNNGC 6 cut(s) 249, 364, 839, 959, 1081, 1311
BstDEI CTNAG 8 cut(s) 38, 252, 312, 513, 945, 1019, 1116, 1301
BstDSI CCRYGG 2 cut(s) 159, 267
BstF5I GGATG 6 cut(s) 114, 138, 223, 387, 787, 1117
BstFNI CGCG 1 cut(s) 221
BstHHI GCGC 2 cut(s) 223, 1285
BstKTI GATC 4 cut(s) 37, 628, 1211, 1300
BstMAI GTCTC 2 cut(s) 315, 1057
BstMBI GATC 4 cut(s) 34, 625, 1208, 1297
BstMCI CGRYCG 1 cut(s) 261
BstNI CCWGG 1 cut(s) 425
BstNSI RCATGY 4 cut(s) 208, 920, 1083, 1313
BstSCI CCNGG 2 cut(s) 147, 423
BstSFI CTRYAG 3 cut(s) 524, 654, 1314
BstUI CGCG 1 cut(s) 221
BstV2I GAAGAC 2 cut(s) 1020, 1326
BstX2I RGATCY 1 cut(s) 1297
BstYI RGATCY 1 cut(s) 1297
BstZI CGGCCG 1 cut(s) 258
Bsu36I CCTNAGG 1 cut(s) 1019
BsuRI GGCC 9 cut(s) 5, 56, 158, 260, 272, 334, 423, 803, 841
BtgI CCRYGG 2 cut(s) 159, 267
BtgZI GCGATG 2 cut(s) 152, 179
BtsCI GGATG 6 cut(s) 114, 138, 223, 387, 787, 1117
BtsI GCAGTG 2 cut(s) 110, 1208
BtsIMutI CAGTG 3 cut(s) 110, 1208, 1232
BveI ACCTGC 1 cut(s) 378
Cac8I GCNNGC 6 cut(s) 249, 364, 839, 959, 1081, 1311
CciNI GCGGCCGC 1 cut(s) 258
CfoI GCGC 2 cut(s) 223, 1285
Cfr10I RCCGGY 2 cut(s) 419, 1066
Cfr13I GGNCC 5 cut(s) 4, 55, 332, 351, 840
Csp6I GTAC 4 cut(s) 145, 190, 540, 1270
CspAI ACCGGT 1 cut(s) 1066
CviAII CATG 7 cut(s) 160, 205, 401, 844, 917, 1080, 1310
CviQI GTAC 4 cut(s) 145, 190, 540, 1270
DdeI CTNAG 8 cut(s) 38, 252, 312, 513, 945, 1019, 1116, 1301
DpnI GATC 4 cut(s) 36, 627, 1210, 1299
DpnII GATC 4 cut(s) 34, 625, 1208, 1297
DraIII CACNNNGTG 1 cut(s) 908
EaeI YGGCCR 3 cut(s) 156, 258, 421
EagI CGGCCG 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 904
EarI CTCTTC 1 cut(s) 904
EclXI CGGCCG 1 cut(s) 258
Eco130I CCWWGG 2 cut(s) 159, 937
Eco24I GRGCYC 1 cut(s) 963
Eco32I GATATC 1 cut(s) 884
Eco47I GGWCC 1 cut(s) 351
Eco52I CGGCCG 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 417
Eco72I CACGTG 1 cut(s) 503
Eco81I CCTNAGG 1 cut(s) 1019
EcoO109I RGGNCCY 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 423
EcoRV GATATC 1 cut(s) 884
EcoT14I CCWWGG 2 cut(s) 159, 937
EcoT22I ATGCAT 2 cut(s) 114, 1311
EcoT38I GRGCYC 1 cut(s) 963
ErhI CCWWGG 2 cut(s) 159, 937
FaeI CATG 7 cut(s) 163, 208, 404, 847, 920, 1083, 1313
FatI CATG 7 cut(s) 159, 204, 400, 843, 916, 1079, 1309
FauI CCCGC 2 cut(s) 201, 589
FokI GGATG 6 cut(s) 121, 145, 210, 394, 794, 1124
FriOI GRGCYC 1 cut(s) 963
FspBI CTAG 2 cut(s) 618, 693
GlaI GCGC 2 cut(s) 222, 1284
GsaI CCCAGC 1 cut(s) 61
HaeIII GGCC 9 cut(s) 5, 56, 158, 260, 272, 334, 423, 803, 841
HapII CCGG 3 cut(s) 149, 420, 1067
HhaI GCGC 2 cut(s) 223, 1285
Hin1II CATG 7 cut(s) 163, 208, 404, 847, 920, 1083, 1313
Hin6I GCGC 2 cut(s) 221, 1283
HinP1I GCGC 2 cut(s) 221, 1283
HinfI GANTC 4 cut(s) 46, 995, 1214, 1291
HpaII CCGG 3 cut(s) 149, 420, 1067
HphI GGTGA 2 cut(s) 611, 1055
Hpy166II GTNNAC 2 cut(s) 190, 914
Hpy188I TCNGA 8 cut(s) 39, 468, 576, 625, 952, 1000, 1213, 1302
Hpy188III TCNNGA 4 cut(s) 349, 731, 879, 1295
Hpy8I GTNNAC 2 cut(s) 190, 914
HpyAV CCTTC 3 cut(s) 407, 467, 1102
HpyCH4III ACNGT 2 cut(s) 1147, 1165
HpyCH4IV ACGT 1 cut(s) 502
HpyF3I CTNAG 8 cut(s) 38, 252, 312, 513, 945, 1019, 1116, 1301
HpySE526I ACGT 1 cut(s) 502
Hsp92II CATG 7 cut(s) 163, 208, 404, 847, 920, 1083, 1313
HspAI GCGC 2 cut(s) 221, 1283
Kzo9I GATC 4 cut(s) 34, 625, 1208, 1297
LweI GCATC 8 cut(s) 99, 121, 129, 159, 232, 238, 724, 1102
MaeI CTAG 2 cut(s) 618, 693
MaeII ACGT 1 cut(s) 502
MaeIII GTNAC 3 cut(s) 599, 661, 1220
MalI GATC 4 cut(s) 36, 627, 1210, 1299
MbiI CCGCTC 1 cut(s) 292
MboI GATC 4 cut(s) 34, 625, 1208, 1297
MboII GAAGA 5 cut(s) 337, 423, 891, 1025, 1326
MflI RGATCY 1 cut(s) 1297
MhlI GDGCHC 2 cut(s) 44, 963
MluCI AATT 1 cut(s) 1037
MlyI GAGTC 2 cut(s) 40, 1208
MmeI TCCRAC 2 cut(s) 964, 1051
MnlI CCTC 9 cut(s) 337, 382, 508, 786, 980, 1003, 1028, 1232, 1244
Mph1103I ATGCAT 2 cut(s) 114, 1311
MseI TTAA 3 cut(s) 711, 1326, 1339
MslI CAYNNNNRTG 2 cut(s) 164, 921
MspA1I CMGCKG 2 cut(s) 512, 1319
MspI CCGG 3 cut(s) 149, 420, 1067
MspR9I CCNGG 2 cut(s) 149, 425
Mva1269I GAATGC 2 cut(s) 1126, 1144
MvaI CCWGG 1 cut(s) 425
MvnI CGCG 1 cut(s) 221
NciI CCSGG 1 cut(s) 149
NcoI CCATGG 1 cut(s) 159
NdeII GATC 4 cut(s) 34, 625, 1208, 1297
NlaIII CATG 7 cut(s) 163, 208, 404, 847, 920, 1083, 1313
NlaIV GGNNCC 2 cut(s) 333, 928
NmuCI GTSAC 2 cut(s) 599, 661
NotI GCGGCCGC 1 cut(s) 258
NsiI ATGCAT 2 cut(s) 114, 1311
NspI RCATGY 4 cut(s) 208, 920, 1083, 1313
PaeI GCATGC 2 cut(s) 1083, 1313
PctI GAATGC 2 cut(s) 1126, 1144
PfeI GAWTC 2 cut(s) 995, 1291
PflMI CCANNNNNTGG 1 cut(s) 382
PinAI ACCGGT 1 cut(s) 1066
PleI GAGTC 2 cut(s) 40, 1208
PmaCI CACGTG 1 cut(s) 503
PmlI CACGTG 1 cut(s) 503
PpsI GAGTC 2 cut(s) 40, 1208
Ppu21I YACGTR 1 cut(s) 503
Psp6I CCWGG 1 cut(s) 423
PspCI CACGTG 1 cut(s) 503
PspFI CCCAGC 1 cut(s) 57
PspGI CCWGG 1 cut(s) 423
PspN4I GGNNCC 2 cut(s) 333, 928
PspPI GGNCC 5 cut(s) 4, 55, 332, 351, 840
PstI CTGCAG 2 cut(s) 528, 1318
PsuI RGATCY 1 cut(s) 1297
PvuII CAGCTG 2 cut(s) 512, 1319
RsaI GTAC 4 cut(s) 146, 191, 541, 1271
RsaNI GTAC 4 cut(s) 145, 190, 540, 1270
RseI CAYNNNNRTG 2 cut(s) 164, 921
SaqAI TTAA 3 cut(s) 711, 1326, 1339
Sau3AI GATC 4 cut(s) 34, 625, 1208, 1297
Sau96I GGNCC 5 cut(s) 4, 55, 332, 351, 840
SchI GAGTC 2 cut(s) 40, 1208
ScrFI CCNGG 2 cut(s) 149, 425
SduI GDGCHC 2 cut(s) 44, 963
SfaNI GCATC 8 cut(s) 99, 121, 129, 159, 232, 238, 724, 1102
SfcI CTRYAG 3 cut(s) 524, 654, 1314
SinI GGWCC 1 cut(s) 351
SmiMI CAYNNNNRTG 2 cut(s) 164, 921
SmlI CTYRAG 2 cut(s) 293, 1216
SmoI CTYRAG 2 cut(s) 293, 1216
SpeI ACTAGT 1 cut(s) 617
SphI GCATGC 2 cut(s) 1083, 1313
Sse9I AATT 1 cut(s) 1037
SspMI CTAG 2 cut(s) 618, 693
StyD4I CCNGG 2 cut(s) 147, 423
StyI CCWWGG 2 cut(s) 159, 937
TaaI ACNGT 2 cut(s) 1147, 1165
TaiI ACGT 1 cut(s) 505
TaqI TCGA 1 cut(s) 833
TasI AATT 1 cut(s) 1037
TfiI GAWTC 2 cut(s) 995, 1291
Tru1I TTAA 3 cut(s) 711, 1326, 1339
Tru9I TTAA 3 cut(s) 711, 1326, 1339
TscAI CASTG 3 cut(s) 110, 1208, 1232
TseFI GTSAC 2 cut(s) 599, 661
Tsp45I GTSAC 2 cut(s) 599, 661
TspDTI ATGAA 4 cut(s) 389, 798, 830, 1142
TspRI CASTG 3 cut(s) 110, 1208, 1232
Van91I CCANNNNNTGG 1 cut(s) 382
VpaK11BI GGWCC 1 cut(s) 351
XceI RCATGY 4 cut(s) 208, 920, 1083, 1313
XcmI CCANNNNNNNNNTGG 1 cut(s) 1232
XspI CTAG 2 cut(s) 618, 693
Zsp2I ATGCAT 2 cut(s) 114, 1311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.