FvH4_2g06660

polyadenylate-binding protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
5520990 .. 5527433
6444 bp
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UTR
Exon/CDS
Intron
FvH4_2g06660.t1

Sequence Viewer

Length: 1386 bp
ATGGCCCAGCAGACCAACGGCGGCAGCGGCGATCTGAGCACGGCTCAGCAGGCCCAGCCCAATCAGCAACAGCAACAGCAGCAGCAACAACAACAGCAGTGGATGCATCAGCATCAGCAGCAATGGATGGCGATGCAGTACCCGGCGGCGGCCATGGCGATGATGCAGCAGCAGATGATGGTGTACCCGCAGCATTACATGCCTGCTTACGCCGCGCATCCGCATCACAATCCCTACCAGCAGGCTCAGGCGGCCGCCGCCGCGGTTGCGTATCAGCAGCAGCAGCAGCCGCCTAAGCAGCAACTGCAGCAGTCGCAGTCGCAGTCGCAGAAGATGGGGCCTACTGATGAGGTCAGGACCATCTGGGCTGGCGACCTGCACCACTGGATGGACGAGGCCTACCTTCACGGCTGCTTCGCTTACACCGGCCAGGTTTCTTCAGTAAAGGTTATACGCAATAAGCAAACAGGTCAGACAGAAGGGTATGGTTTTGTTGAGTTCTATTCACGTGAAGCAGCTGAGGAAGTTCTGCAGACCTATAATGGTACTCCTATGCCAAATACAGAGCAGCCTTTTCGTTTGAACTGGGCAACCTTTAGTGCGGGTGACAGACGGGCAGATACTAGTTCTGATCTATCTATATTCGTAGGAGATTTAGCTACAGATGTTACTGACACTATGTTGCAAGAAACTTTTGCTAGTAGATATTCATCTGTTAAGGGGGCTAAAGTTGTTCAAGATGCAAATACTGGTCGTTCAAAGGGTTATGGTTTTGTTAGGTTTGGGGATGAAAATGAGAGGACAAAGGCCATTGTGGAAATGAATGGTGCGTATTGTTCAAGTAGGCCCATGCGTATAGGTGTTGCAACACCCAAAAAATCATCTGGATATCAACAACAGTACTCTTCACAAGCATTGGTATTGGCTGGAGGTGGTGGACATGCAAATGGTGGCGTTGCCCAAGGTTCTCAGTCCGATGGCGAGCCCAATAACACAACTATATTTGTTGGAGGGCTTGATTCCGATGTCAATGAGGAAGACCTCAGGCAGCCATTTTCTCAATTTGGTGAAGTTATCTCTGTGAAAATACCGGTTGGAAAAGCATGCGGTTTTGTTCAGTTTGCTAACAGCCATGTTCTTTTGGTTTGTAGGAAGGATGCTGAGAATGCAATGAATATGCTGAATGCGACTGTTATTGGAAAGCAAACAGTTCGTCTTTCTTGGGGTCGCAGCCAAGGCAACAAGCAGTGGAGATCGGACTCAAATAACCAGTGGAACAATGGGGGACATTATGGAGGGCAGGGGTATGGTGGGTATGCAAATGCCGCGCCACAGAATCCTGATATGAGTATGCATGCTTCAGCTGCGGTTAACGGGTCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

462

Amino Acids

50.59

Weight (kDa)

6.35

Isoelectric Point (pI)

57.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 124 - 188 3.3e-11 RNA recognition motif
RRM_1 PF00076 214 - 284 1.8e-16 RNA recognition motif
RRM_1 PF00076 334 - 404 8.2e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 384
AccB7I CCANNNNNTGG 1 cut(s) 388
AccII CGCG 3 cut(s) 215, 263, 1328
AcoI YGGCCR 3 cut(s) 150, 252, 427
AcuI CTGAAG 2 cut(s) 423, 1344
AcvI CACGTG 1 cut(s) 509
AfaI GTAC 4 cut(s) 140, 185, 547, 902
AfiI CCNNNNNNNGG 2 cut(s) 148, 388
AgeI ACCGGT 1 cut(s) 1090
AgsI TTSAA 4 cut(s) 583, 737, 759, 840
AhlI ACTAGT 1 cut(s) 623
AjnI CCWGG 1 cut(s) 429
AluBI AGCT 3 cut(s) 518, 659, 1364
AluI AGCT 3 cut(s) 518, 659, 1364
Alw21I GWGCWC 1 cut(s) 41
AlwNI CAGNNNCTG 1 cut(s) 304
AoxI GGCC 9 cut(s) 3, 51, 150, 252, 338, 396, 427, 807, 845
ArsI GACNNNNNNTTYG 2 cut(s) 1198, 1230
AsiGI ACCGGT 1 cut(s) 1090
AspLEI GCGC 2 cut(s) 217, 1330
AspS9I GGNCC 5 cut(s) 4, 52, 338, 357, 846
AsuC2I CCSGG 1 cut(s) 143
AsuHPI GGTGA 2 cut(s) 617, 1079
AvaII GGWCC 1 cut(s) 357
AxyI CCTNAGG 1 cut(s) 1043
BanII GRGCYC 1 cut(s) 987
BarI GAAGNNNNNNTAC 2 cut(s) 1342, 1374
BbrPI CACGTG 1 cut(s) 509
BbsI GAAGAC 2 cut(s) 1044, 1371
Bbv12I GWGCWC 1 cut(s) 41
BbvCI CCTCAGC 1 cut(s) 519
BccI CCATC 6 cut(s) 121, 172, 328, 368, 382, 971
BceAI ACGGC 3 cut(s) 34, 57, 424
BcgI CGANNNNNNTGC 4 cut(s) 557, 591, 1193, 1227
BciT130I CCWGG 1 cut(s) 431
BcnI CCSGG 1 cut(s) 143
BcuI ACTAGT 1 cut(s) 623
BfaI CTAG 2 cut(s) 624, 699
BfmI CTRYAG 3 cut(s) 305, 530, 660
BfuAI ACCTGC 1 cut(s) 384
BlpI GCTNAGC 1 cut(s) 45
BmcAI AGTACT 1 cut(s) 902
Bme1390I CCNGG 2 cut(s) 143, 431
Bme18I GGWCC 1 cut(s) 357
BmgT120I GGNCC 5 cut(s) 4, 52, 338, 357, 846
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 2 cut(s) 143, 431
BmrI ACTGGG 1 cut(s) 595
BmsI GCATC 9 cut(s) 93, 115, 121, 123, 153, 226, 232, 730, 1147
BmuI ACTGGG 1 cut(s) 595
BpiI GAAGAC 2 cut(s) 1044, 1371
BplI GAGNNNNNCTC 2 cut(s) 28, 60
BpmI CTGGAG 1 cut(s) 948
Bpu10I CCTNAGC 3 cut(s) 246, 294, 519
Bpu1102I GCTNAGC 1 cut(s) 45
BpuMI CCSGG 1 cut(s) 143
BsaAI YACGTR 1 cut(s) 509
BsaBI GATNNNNATC 1 cut(s) 709
BsaJI CCNNGG 4 cut(s) 153, 261, 961, 1234
BsaWI WCCGGW 1 cut(s) 1090
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 388
Bse118I RCCGGY 2 cut(s) 425, 1090
Bse1I ACTGG 4 cut(s) 389, 590, 754, 1270
Bse21I CCTNAGG 1 cut(s) 1043
Bse3DI GCAATG 2 cut(s) 128, 1176
Bse8I GATNNNNATC 1 cut(s) 709
BseBI CCWGG 1 cut(s) 431
BseDI CCNNGG 4 cut(s) 153, 261, 961, 1234
BseGI GGATG 6 cut(s) 108, 132, 217, 393, 793, 1162
BseJI GATNNNNATC 1 cut(s) 709
BseLI CCNNNNNNNGG 2 cut(s) 148, 388
BseMI GCAATG 2 cut(s) 128, 1176
BseMII CTCAG 7 cut(s) 26, 59, 260, 510, 983, 1057, 1152
BseNI ACTGG 4 cut(s) 389, 590, 754, 1270
BseX3I CGGCCG 1 cut(s) 252
BseYI CCCAGC 2 cut(s) 6, 54
BsgI GTGCAG 1 cut(s) 362
Bsh1236I CGCG 3 cut(s) 215, 263, 1328
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 9 cut(s) 5, 53, 152, 254, 340, 398, 429, 809, 847
BshTI ACCGGT 1 cut(s) 1090
BsiEI CGRYCG 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 41
BsiSI CCGG 3 cut(s) 143, 426, 1091
BslFI GGGAC 1 cut(s) 1299
BslI CCNNNNNNNGG 2 cut(s) 148, 388
BsmFI GGGAC 1 cut(s) 1299
BsmI GAATGC 2 cut(s) 1171, 1189
BsnI GGCC 9 cut(s) 5, 53, 152, 254, 340, 398, 429, 809, 847
Bsp1286I GDGCHC 2 cut(s) 41, 987
Bsp143I GATC 3 cut(s) 31, 631, 1253
Bsp1720I GCTNAGC 1 cut(s) 45
Bsp19I CCATGG 1 cut(s) 153
BspANI GGCC 9 cut(s) 5, 53, 152, 254, 340, 398, 429, 809, 847
BspCNI CTCAG 7 cut(s) 27, 58, 259, 511, 982, 1056, 1153
BspFNI CGCG 3 cut(s) 215, 263, 1328
BspLI GGNNCC 1 cut(s) 339
BspMAI CTGCAG 2 cut(s) 309, 534
BspMI ACCTGC 1 cut(s) 384
BsrDI GCAATG 2 cut(s) 128, 1176
BsrFI RCCGGY 2 cut(s) 425, 1090
BsrI ACTGG 4 cut(s) 389, 590, 754, 1270
BssAI RCCGGY 2 cut(s) 425, 1090
BssECI CCNNGG 4 cut(s) 153, 261, 961, 1234
BssMI GATC 3 cut(s) 31, 631, 1253
BssT1I CCWWGG 3 cut(s) 153, 961, 1234
Bst2UI CCWGG 1 cut(s) 431
Bst4CI ACNGT 3 cut(s) 900, 1192, 1210
Bst6I CTCTTC 1 cut(s) 910
BstAPI GCANNNNNTGC 3 cut(s) 103, 199, 304
BstBAI YACGTR 1 cut(s) 509
BstC8I GCNNGC 7 cut(s) 51, 204, 243, 370, 983, 1105, 1356
BstDEI CTNAG 8 cut(s) 35, 45, 246, 294, 519, 969, 1043, 1161
BstDSI CCRYGG 2 cut(s) 153, 261
BstF5I GGATG 6 cut(s) 108, 132, 217, 393, 793, 1162
BstFNI CGCG 3 cut(s) 215, 263, 1328
BstHHI GCGC 2 cut(s) 217, 1330
BstKTI GATC 3 cut(s) 34, 634, 1256
BstMBI GATC 3 cut(s) 31, 631, 1253
BstMCI CGRYCG 1 cut(s) 255
BstNI CCWGG 1 cut(s) 431
BstNSI RCATGY 4 cut(s) 202, 944, 1107, 1358
BstSCI CCNGG 2 cut(s) 141, 429
BstSFI CTRYAG 3 cut(s) 305, 530, 660
BstUI CGCG 3 cut(s) 215, 263, 1328
BstV2I GAAGAC 2 cut(s) 1044, 1371
BstZI CGGCCG 1 cut(s) 252
Bsu36I CCTNAGG 1 cut(s) 1043
BsuRI GGCC 9 cut(s) 5, 53, 152, 254, 340, 398, 429, 809, 847
BtgI CCRYGG 2 cut(s) 153, 261
BtgZI GCGATG 2 cut(s) 146, 173
BtsCI GGATG 6 cut(s) 108, 132, 217, 393, 793, 1162
BtsI GCAGTG 2 cut(s) 104, 1253
BtsIMutI CAGTG 4 cut(s) 104, 382, 1253, 1277
BveI ACCTGC 1 cut(s) 384
Cac8I GCNNGC 7 cut(s) 51, 204, 243, 370, 983, 1105, 1356
CaiI CAGNNNCTG 1 cut(s) 304
CciNI GCGGCCGC 1 cut(s) 252
CfoI GCGC 2 cut(s) 217, 1330
Cfr10I RCCGGY 2 cut(s) 425, 1090
Cfr13I GGNCC 5 cut(s) 4, 52, 338, 357, 846
Cfr42I CCGCGG 1 cut(s) 264
Csp6I GTAC 4 cut(s) 139, 184, 546, 901
CspAI ACCGGT 1 cut(s) 1090
CspCI CAANNNNNGTGG 2 cut(s) 80, 115
CviAII CATG 7 cut(s) 154, 199, 850, 941, 1104, 1133, 1355
CviQI GTAC 4 cut(s) 139, 184, 546, 901
DdeI CTNAG 8 cut(s) 35, 45, 246, 294, 519, 969, 1043, 1161
DpnI GATC 3 cut(s) 33, 633, 1255
DpnII GATC 3 cut(s) 31, 631, 1253
EaeI YGGCCR 3 cut(s) 150, 252, 427
EagI CGGCCG 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 910
EarI CTCTTC 1 cut(s) 910
EclXI CGGCCG 1 cut(s) 252
Eco130I CCWWGG 3 cut(s) 153, 961, 1234
Eco147I AGGCCT 1 cut(s) 398
Eco24I GRGCYC 1 cut(s) 987
Eco32I GATATC 1 cut(s) 890
Eco47I GGWCC 1 cut(s) 357
Eco52I CGGCCG 1 cut(s) 252
Eco57I CTGAAG 2 cut(s) 423, 1344
Eco72I CACGTG 1 cut(s) 509
Eco81I CCTNAGG 1 cut(s) 1043
EcoO109I RGGNCCY 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 429
EcoRV GATATC 1 cut(s) 890
EcoT14I CCWWGG 3 cut(s) 153, 961, 1234
EcoT22I ATGCAT 2 cut(s) 108, 1356
EcoT38I GRGCYC 1 cut(s) 987
ErhI CCWWGG 3 cut(s) 153, 961, 1234
FaeI CATG 7 cut(s) 157, 202, 853, 944, 1107, 1136, 1358
FaqI GGGAC 1 cut(s) 1299
FatI CATG 7 cut(s) 153, 198, 849, 940, 1103, 1132, 1354
FauI CCCGC 2 cut(s) 195, 595
FokI GGATG 6 cut(s) 115, 139, 204, 400, 800, 1169
FriOI GRGCYC 1 cut(s) 987
FspBI CTAG 2 cut(s) 624, 699
GlaI GCGC 2 cut(s) 216, 1329
GsaI CCCAGC 2 cut(s) 10, 58
GsuI CTGGAG 1 cut(s) 948
HaeIII GGCC 9 cut(s) 5, 53, 152, 254, 340, 398, 429, 809, 847
HapII CCGG 3 cut(s) 143, 426, 1091
HhaI GCGC 2 cut(s) 217, 1330
Hin1II CATG 7 cut(s) 157, 202, 853, 944, 1107, 1136, 1358
Hin6I GCGC 2 cut(s) 215, 1328
HinP1I GCGC 2 cut(s) 215, 1328
HincII GTYRAC 1 cut(s) 1372
HindII GTYRAC 1 cut(s) 1372
HinfI GANTC 3 cut(s) 1019, 1259, 1336
HpaI GTTAAC 1 cut(s) 1372
HpaII CCGG 3 cut(s) 143, 426, 1091
HphI GGTGA 2 cut(s) 617, 1079
Hpy166II GTNNAC 3 cut(s) 184, 938, 1372
Hpy188I TCNGA 6 cut(s) 36, 474, 631, 976, 1024, 1258
Hpy188III TCNNGA 4 cut(s) 355, 737, 885, 1340
Hpy8I GTNNAC 3 cut(s) 184, 938, 1372
HpyAV CCTTC 3 cut(s) 413, 473, 1147
HpyCH4III ACNGT 3 cut(s) 900, 1192, 1210
HpyCH4IV ACGT 1 cut(s) 508
HpyF3I CTNAG 8 cut(s) 35, 45, 246, 294, 519, 969, 1043, 1161
HpySE526I ACGT 1 cut(s) 508
Hsp92II CATG 7 cut(s) 157, 202, 853, 944, 1107, 1136, 1358
HspAI GCGC 2 cut(s) 215, 1328
KspAI GTTAAC 1 cut(s) 1372
KspI CCGCGG 1 cut(s) 264
Kzo9I GATC 3 cut(s) 31, 631, 1253
LweI GCATC 9 cut(s) 93, 115, 121, 123, 153, 226, 232, 730, 1147
MaeI CTAG 2 cut(s) 624, 699
MaeII ACGT 1 cut(s) 508
MaeIII GTNAC 2 cut(s) 605, 667
MalI GATC 3 cut(s) 33, 633, 1255
MboI GATC 3 cut(s) 31, 631, 1253
MboII GAAGA 5 cut(s) 343, 429, 897, 1049, 1371
MhlI GDGCHC 2 cut(s) 41, 987
MluCI AATT 1 cut(s) 1061
MlyI GAGTC 1 cut(s) 1253
MmeI TCCRAC 2 cut(s) 988, 1075
MnlI CCTC 9 cut(s) 343, 388, 514, 792, 923, 1004, 1027, 1052, 1289
Mph1103I ATGCAT 2 cut(s) 108, 1356
MseI TTAA 3 cut(s) 717, 1371, 1384
MslI CAYNNNNRTG 2 cut(s) 158, 945
MspA1I CMGCKG 4 cut(s) 27, 263, 518, 1364
MspI CCGG 3 cut(s) 143, 426, 1091
MspR9I CCNGG 2 cut(s) 143, 431
Mva1269I GAATGC 2 cut(s) 1171, 1189
MvaI CCWGG 1 cut(s) 431
MvnI CGCG 3 cut(s) 215, 263, 1328
NciI CCSGG 1 cut(s) 143
NcoI CCATGG 1 cut(s) 153
NdeII GATC 3 cut(s) 31, 631, 1253
NlaIII CATG 7 cut(s) 157, 202, 853, 944, 1107, 1136, 1358
NlaIV GGNNCC 1 cut(s) 339
NmuCI GTSAC 1 cut(s) 605
NotI GCGGCCGC 1 cut(s) 252
NsiI ATGCAT 2 cut(s) 108, 1356
NspI RCATGY 4 cut(s) 202, 944, 1107, 1358
PaeI GCATGC 2 cut(s) 1107, 1358
PceI AGGCCT 1 cut(s) 398
PctI GAATGC 2 cut(s) 1171, 1189
PfeI GAWTC 2 cut(s) 1019, 1336
PflMI CCANNNNNTGG 1 cut(s) 388
PinAI ACCGGT 1 cut(s) 1090
PleI GAGTC 1 cut(s) 1253
PmaCI CACGTG 1 cut(s) 509
PmlI CACGTG 1 cut(s) 509
PpsI GAGTC 1 cut(s) 1253
Ppu21I YACGTR 1 cut(s) 509
Psp6I CCWGG 1 cut(s) 429
PspCI CACGTG 1 cut(s) 509
PspFI CCCAGC 2 cut(s) 6, 54
PspGI CCWGG 1 cut(s) 429
PspN4I GGNNCC 1 cut(s) 339
PspPI GGNCC 5 cut(s) 4, 52, 338, 357, 846
PstI CTGCAG 2 cut(s) 309, 534
PstNI CAGNNNCTG 1 cut(s) 304
PvuII CAGCTG 2 cut(s) 518, 1364
RsaI GTAC 4 cut(s) 140, 185, 547, 902
RsaNI GTAC 4 cut(s) 139, 184, 546, 901
RseI CAYNNNNRTG 2 cut(s) 158, 945
SacII CCGCGG 1 cut(s) 264
SaqAI TTAA 3 cut(s) 717, 1371, 1384
Sau3AI GATC 3 cut(s) 31, 631, 1253
Sau96I GGNCC 5 cut(s) 4, 52, 338, 357, 846
ScaI AGTACT 1 cut(s) 902
SchI GAGTC 1 cut(s) 1253
ScrFI CCNGG 2 cut(s) 143, 431
SduI GDGCHC 2 cut(s) 41, 987
SfaNI GCATC 9 cut(s) 93, 115, 121, 123, 153, 226, 232, 730, 1147
SfcI CTRYAG 3 cut(s) 305, 530, 660
Sfr303I CCGCGG 1 cut(s) 264
SgrBI CCGCGG 1 cut(s) 264
SinI GGWCC 1 cut(s) 357
SmiMI CAYNNNNRTG 2 cut(s) 158, 945
SpeI ACTAGT 1 cut(s) 623
SphI GCATGC 2 cut(s) 1107, 1358
Sse9I AATT 1 cut(s) 1061
SseBI AGGCCT 1 cut(s) 398
SspMI CTAG 2 cut(s) 624, 699
StuI AGGCCT 1 cut(s) 398
StyD4I CCNGG 2 cut(s) 141, 429
StyI CCWWGG 3 cut(s) 153, 961, 1234
TaaI ACNGT 3 cut(s) 900, 1192, 1210
TaiI ACGT 1 cut(s) 511
TasI AATT 1 cut(s) 1061
TatI WGTACW 1 cut(s) 900
TfiI GAWTC 2 cut(s) 1019, 1336
Tru1I TTAA 3 cut(s) 717, 1371, 1384
Tru9I TTAA 3 cut(s) 717, 1371, 1384
TscAI CASTG 4 cut(s) 104, 389, 1253, 1277
TseFI GTSAC 1 cut(s) 605
Tsp45I GTSAC 1 cut(s) 605
TspDTI ATGAA 4 cut(s) 699, 804, 836, 1187
TspRI CASTG 4 cut(s) 104, 389, 1253, 1277
Van91I CCANNNNNTGG 1 cut(s) 388
VpaK11BI GGWCC 1 cut(s) 357
XceI RCATGY 4 cut(s) 202, 944, 1107, 1358
XcmI CCANNNNNNNNNTGG 1 cut(s) 1277
XspI CTAG 2 cut(s) 624, 699
ZrmI AGTACT 1 cut(s) 902
Zsp2I ATGCAT 2 cut(s) 108, 1356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.