pycom05g06950

polyadenylate-binding protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
9837342 .. 9843089
5748 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g06950.2

Sequence Viewer

Length: 1344 bp
ATGGCCCAGCAATCTAACGGCGGCGCCGATCTGGGCACTCAGCAGCAGCATCTGCAACAACAACAGCAACAACAGCAGCAGCAGCAATGGATGCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATGGATGGCCATGCAGTACCCGGCCGCGGCGATGGCGATGATGCAGCAGCAGATGATGGTGTACCCGCAGCATTACATGCCATACGCGGCGACTCCCCATCATCCTCACCACAATCCATACCAGCAGCAACCTCAGGCTGTGGCGTATCAGCAGCAGCAGCCGCCGAAGCAGCAGCATTCGCCGTCCCAGAAACAGGGGCCCACCGACGAGGTCAGGACCATCTGGGTCGGCGACCTTCATCATTGGATGGACGAGACTTACCTTCACGGATGCTTTGCTCACACTGGACAGGTTTCCTCAGTAAAGGTTATACGCAATAAGCAAACTGGTCAGTCAGAGGGATATGGATTTGTTGAGTTCTATTCACGTGAAGTAGCTGAAGAAGTTTTGCAGAACTGTAACGGAGTTCCCATGCCGAATACAGAGCAGCCTTTTCGTTTGAACTGGGCAACCTTCAGTGCTGGTGATAGACGAGCAGACCCTAGTTCTGATCTATCTATCTTTGTAGGAGATTTGGCTACAGATGTGACTGACACTATGTTGCAGGAGACTTTTTCTAGTAGATATTCATCTGTTAAGGGAGCAAAAGTTGTTCTAGATGCAAATACTGGACGTTCAAAAGGTTATGGTTTTGTTAGGTTTGGTGATGAAAATGAGAGGTCAAGGGCCATTGCCGAAATGAATGGTGCGTATTGTTCAAGCAGGGCCATGCGCATAGGTGTTGCAACACCCAAAAAATCACCTGCATATCAACAACAGTATTCTTCACAAGCATTGGTATTGGCTGGTGGTGGACATGCATCAAATGTTGCTGTCGCCCAAGGGTCCCAGTTTGACAGTGAGCCCAATAACACAACTATATTTGTTGGAGGGCTTGATTCTGAGGTCAATGATGAAGACCTCCGGCAGCCTTTTTCTCATTTCGGTGAAGTTGTCTCTGTGAAAATACCAGTTGGAAAAGCTTGTGGTTTTGTTCAGTTTGCTAATAGGAAGGATGCTGAGAACGCAATACAGATGTTGAATGGAACAGTTATTGGCAAGCAAACAGTTCGACTTTCTTGGGGTCGCAGTCAGGGGAACAAGCAGTGGAGGTCGGATTCAAGTAACCAGTGGAACGGAGCACATTATGGAGGACAGGGCTATGGTGGGTATGGACATGTGCCACAGGGTCAGGACCTGAGCATGCACACCGCAGCTGCAGTTAACGGGACTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

448

Amino Acids

49.6

Weight (kDa)

6.49

Isoelectric Point (pI)

60.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 877
Acc16I TGCGCA 1 cut(s) 839
Acc36I ACCTGC 1 cut(s) 877
AccB1I GGYRCC 1 cut(s) 23
AccII CGCG 2 cut(s) 152, 212
AciI CCGC 7 cut(s) 21, 150, 152, 191, 212, 287, 1317
AcoI YGGCCR 2 cut(s) 132, 147
AcuI CTGAAG 2 cut(s) 525, 565
AcvI CACGTG 1 cut(s) 494
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 2 cut(s) 143, 188
AfiI CCNNNNNNNGG 2 cut(s) 151, 319
AflIII ACRYGT 1 cut(s) 1282
AgsI TTSAA 5 cut(s) 568, 744, 825, 1147, 1227
AluBI AGCT 3 cut(s) 503, 1088, 1322
AluI AGCT 3 cut(s) 503, 1088, 1322
Alw21I GWGCWC 1 cut(s) 1249
Alw26I GTCTC 3 cut(s) 374, 668, 1066
AlwNI CAGNNNCTG 2 cut(s) 52, 1303
AoxI GGCC 6 cut(s) 3, 132, 147, 323, 792, 831
ApaI GGGCCC 1 cut(s) 327
AspLEI GCGC 2 cut(s) 26, 840
AspS9I GGNCC 8 cut(s) 4, 323, 324, 342, 792, 831, 951, 1300
AsuC2I CCSGG 1 cut(s) 146
AsuHPI GGTGA 5 cut(s) 224, 602, 782, 858, 1064
AvaII GGWCC 3 cut(s) 342, 951, 1300
AxyI CCTNAGG 1 cut(s) 258
BaeGI GKGCMC 2 cut(s) 38, 327
BalI TGGCCA 1 cut(s) 134
BanI GGYRCC 1 cut(s) 23
BanII GRGCYC 2 cut(s) 327, 972
BbrPI CACGTG 1 cut(s) 494
BbsI GAAGAC 1 cut(s) 1029
Bbv12I GWGCWC 1 cut(s) 1249
BccI CCATC 6 cut(s) 124, 151, 175, 231, 353, 367
BceAI ACGGC 2 cut(s) 34, 292
BcgI CGANNNNNNTGC 4 cut(s) 542, 576, 1157, 1191
BcnI CCSGG 1 cut(s) 146
BcoDI GTCTC 3 cut(s) 374, 668, 1066
BfaI CTAG 3 cut(s) 609, 684, 722
BfmI CTRYAG 2 cut(s) 645, 1323
BfoI RGCGCY 1 cut(s) 27
BfuAI ACCTGC 1 cut(s) 877
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 3 cut(s) 342, 951, 1300
BmgT120I GGNCC 8 cut(s) 4, 323, 324, 342, 792, 831, 951, 1300
BmiI GGNNCC 5 cut(s) 25, 324, 325, 952, 953
BmrFI CCNGG 1 cut(s) 146
BmrI ACTGGG 2 cut(s) 580, 949
BmsI GCATC 7 cut(s) 58, 81, 156, 386, 715, 935, 1111
BmuI ACTGGG 2 cut(s) 580, 949
BpiI GAAGAC 1 cut(s) 1029
Bpu10I CCTNAGC 1 cut(s) 1304
BpuMI CCSGG 1 cut(s) 146
BsaAI YACGTR 1 cut(s) 494
BsaBI GATNNNNATC 1 cut(s) 694
BsaHI GRCGYC 1 cut(s) 24
BsaJI CCNNGG 2 cut(s) 150, 946
BsaXI ACNNNNNCTCC 2 cut(s) 699, 729
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 319
Bse1I ACTGG 7 cut(s) 415, 457, 575, 739, 955, 1076, 1234
Bse21I CCTNAGG 1 cut(s) 258
Bse3DI GCAATG 3 cut(s) 92, 131, 795
Bse8I GATNNNNATC 1 cut(s) 694
BseDI CCNNGG 2 cut(s) 150, 946
BseGI GGATG 6 cut(s) 96, 135, 226, 378, 401, 1126
BseJI GATNNNNATC 1 cut(s) 694
BseLI CCNNNNNNNGG 2 cut(s) 151, 319
BseMI GCAATG 3 cut(s) 92, 131, 795
BseMII CTCAG 6 cut(s) 53, 272, 438, 999, 1116, 1295
BseNI ACTGG 7 cut(s) 415, 457, 575, 739, 955, 1076, 1234
BseSI GKGCMC 2 cut(s) 38, 327
BseX3I CGGCCG 1 cut(s) 147
BseYI CCCAGC 1 cut(s) 6
Bsh1236I CGCG 2 cut(s) 152, 212
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 6 cut(s) 5, 134, 149, 325, 794, 833
BshNI GGYRCC 1 cut(s) 23
BsiEI CGRYCG 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 1249
BsiSI CCGG 2 cut(s) 146, 1030
BslFI GGGAC 2 cut(s) 295, 937
BslI CCNNNNNNNGG 2 cut(s) 151, 319
BsmAI GTCTC 3 cut(s) 374, 668, 1066
BsmFI GGGAC 2 cut(s) 295, 937
BsmI GAATGC 1 cut(s) 301
BsnI GGCC 6 cut(s) 5, 134, 149, 325, 794, 833
Bsp120I GGGCCC 1 cut(s) 323
Bsp1286I GDGCHC 4 cut(s) 38, 327, 972, 1249
Bsp143I GATC 2 cut(s) 28, 616
BspACI CCGC 7 cut(s) 21, 150, 152, 191, 212, 287, 1317
BspANI GGCC 6 cut(s) 5, 134, 149, 325, 794, 833
BspCNI CTCAG 6 cut(s) 52, 271, 437, 1000, 1117, 1296
BspFNI CGCG 2 cut(s) 152, 212
BspLI GGNNCC 5 cut(s) 25, 324, 325, 952, 953
BspMAI CTGCAG 1 cut(s) 1327
BspMI ACCTGC 1 cut(s) 877
BspT107I GGYRCC 1 cut(s) 23
BsrDI GCAATG 3 cut(s) 92, 131, 795
BsrI ACTGG 7 cut(s) 415, 457, 575, 739, 955, 1076, 1234
BssECI CCNNGG 2 cut(s) 150, 946
BssMI GATC 2 cut(s) 28, 616
BssNI GRCGYC 1 cut(s) 24
BssT1I CCWWGG 1 cut(s) 946
Bst4CI ACNGT 5 cut(s) 524, 885, 965, 1156, 1174
BstACI GRCGYC 1 cut(s) 24
BstAPI GCANNNNNTGC 3 cut(s) 52, 91, 202
BstBAI YACGTR 1 cut(s) 494
BstC8I GCNNGC 2 cut(s) 1166, 1310
BstDEI CTNAG 6 cut(s) 39, 258, 424, 1008, 1125, 1304
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 6 cut(s) 96, 135, 226, 378, 401, 1126
BstFNI CGCG 2 cut(s) 152, 212
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 2 cut(s) 26, 840
BstKTI GATC 2 cut(s) 31, 619
BstMAI GTCTC 3 cut(s) 374, 668, 1066
BstMBI GATC 2 cut(s) 28, 616
BstMCI CGRYCG 1 cut(s) 150
BstNSI RCATGY 4 cut(s) 205, 926, 1286, 1312
BstSCI CCNGG 1 cut(s) 144
BstSFI CTRYAG 2 cut(s) 645, 1323
BstSLI GKGCMC 2 cut(s) 38, 327
BstUI CGCG 2 cut(s) 152, 212
BstV2I GAAGAC 1 cut(s) 1029
BstZI CGGCCG 1 cut(s) 147
Bsu36I CCTNAGG 1 cut(s) 258
BsuRI GGCC 6 cut(s) 5, 134, 149, 325, 794, 833
BtgI CCRYGG 1 cut(s) 150
BtgZI GCGATG 2 cut(s) 170, 176
BtsCI GGATG 6 cut(s) 96, 135, 226, 378, 401, 1126
BtsI GCAGTG 1 cut(s) 1217
BtsIMutI CAGTG 5 cut(s) 408, 589, 970, 1217, 1241
BveI ACCTGC 1 cut(s) 877
Cac8I GCNNGC 2 cut(s) 1166, 1310
CaiI CAGNNNCTG 2 cut(s) 52, 1303
CfoI GCGC 2 cut(s) 26, 840
Cfr13I GGNCC 8 cut(s) 4, 323, 324, 342, 792, 831, 951, 1300
Cfr42I CCGCGG 1 cut(s) 153
Csp6I GTAC 2 cut(s) 142, 187
CviAII CATG 7 cut(s) 136, 202, 538, 835, 923, 1283, 1309
CviQI GTAC 2 cut(s) 142, 187
DdeI CTNAG 6 cut(s) 39, 258, 424, 1008, 1125, 1304
DinI GGCGCC 1 cut(s) 25
DpnI GATC 2 cut(s) 30, 618
DpnII GATC 2 cut(s) 28, 616
EaeI YGGCCR 2 cut(s) 132, 147
EagI CGGCCG 1 cut(s) 147
EclXI CGGCCG 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 946
Eco24I GRGCYC 2 cut(s) 327, 972
Eco47I GGWCC 3 cut(s) 342, 951, 1300
Eco52I CGGCCG 1 cut(s) 147
Eco57I CTGAAG 2 cut(s) 525, 565
Eco72I CACGTG 1 cut(s) 494
Eco81I CCTNAGG 1 cut(s) 258
EcoO109I RGGNCCY 3 cut(s) 323, 951, 1300
EcoT14I CCWWGG 1 cut(s) 946
EcoT22I ATGCAT 1 cut(s) 928
EcoT38I GRGCYC 2 cut(s) 327, 972
EgeI GGCGCC 1 cut(s) 25
EheI GGCGCC 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 946
FaeI CATG 7 cut(s) 139, 205, 541, 838, 926, 1286, 1312
FaqI GGGAC 2 cut(s) 295, 937
FatI CATG 7 cut(s) 135, 201, 537, 834, 922, 1282, 1308
FauI CCCGC 1 cut(s) 198
FokI GGATG 6 cut(s) 103, 142, 213, 385, 408, 1133
FriOI GRGCYC 2 cut(s) 327, 972
FspAI RTGCGCAY 1 cut(s) 839
FspBI CTAG 3 cut(s) 609, 684, 722
FspI TGCGCA 1 cut(s) 839
GlaI GCGC 2 cut(s) 25, 839
GsaI CCCAGC 1 cut(s) 10
HaeII RGCGCY 1 cut(s) 27
HaeIII GGCC 6 cut(s) 5, 134, 149, 325, 794, 833
HapII CCGG 2 cut(s) 146, 1030
HhaI GCGC 2 cut(s) 26, 840
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 7 cut(s) 139, 205, 541, 838, 926, 1286, 1312
Hin6I GCGC 2 cut(s) 24, 838
HinP1I GCGC 2 cut(s) 24, 838
HincII GTYRAC 1 cut(s) 1330
HindII GTYRAC 1 cut(s) 1330
HindIII AAGCTT 1 cut(s) 1086
HinfI GANTC 3 cut(s) 217, 1004, 1223
HpaI GTTAAC 1 cut(s) 1330
HpaII CCGG 2 cut(s) 146, 1030
HphI GGTGA 5 cut(s) 224, 602, 782, 858, 1064
Hpy166II GTNNAC 3 cut(s) 187, 920, 1330
Hpy188I TCNGA 4 cut(s) 463, 616, 1009, 1222
Hpy188III TCNNGA 3 cut(s) 340, 722, 1298
Hpy8I GTNNAC 3 cut(s) 187, 920, 1330
Hpy99I CGWCG 1 cut(s) 335
HpyAV CCTTC 4 cut(s) 371, 398, 589, 1111
HpyCH4III ACNGT 5 cut(s) 524, 885, 965, 1156, 1174
HpyCH4IV ACGT 2 cut(s) 493, 739
HpyF3I CTNAG 6 cut(s) 39, 258, 424, 1008, 1125, 1304
HpySE526I ACGT 2 cut(s) 493, 739
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 7 cut(s) 139, 205, 541, 838, 926, 1286, 1312
HspAI GCGC 2 cut(s) 24, 838
KasI GGCGCC 1 cut(s) 23
KflI GGGWCCC 1 cut(s) 951
KspAI GTTAAC 1 cut(s) 1330
KspI CCGCGG 1 cut(s) 153
Kzo9I GATC 2 cut(s) 28, 616
LmnI GCTCC 2 cut(s) 707, 1244
LweI GCATC 7 cut(s) 58, 81, 156, 386, 715, 935, 1111
MaeI CTAG 3 cut(s) 609, 684, 722
MaeII ACGT 2 cut(s) 493, 739
MaeIII GTNAC 3 cut(s) 524, 652, 1229
MalI GATC 2 cut(s) 30, 618
MboI GATC 2 cut(s) 28, 616
MboII GAAGA 3 cut(s) 518, 882, 1034
MhlI GDGCHC 4 cut(s) 38, 327, 972, 1249
MlsI TGGCCA 1 cut(s) 134
MluNI TGGCCA 1 cut(s) 134
Mly113I GGCGCC 1 cut(s) 24
MlyI GAGTC 1 cut(s) 211
MmeI TCCRAC 3 cut(s) 973, 1060, 1200
Mox20I TGGCCA 1 cut(s) 134
Mph1103I ATGCAT 1 cut(s) 928
MscI TGGCCA 1 cut(s) 134
MseI TTAA 3 cut(s) 702, 1329, 1342
MslI CAYNNNNRTG 1 cut(s) 1050
Msp20I TGGCCA 1 cut(s) 134
MspA1I CMGCKG 2 cut(s) 152, 1322
MspI CCGG 2 cut(s) 146, 1030
MspR9I CCNGG 1 cut(s) 146
Mva1269I GAATGC 1 cut(s) 301
MvnI CGCG 2 cut(s) 152, 212
NarI GGCGCC 1 cut(s) 24
NciI CCSGG 1 cut(s) 146
NdeII GATC 2 cut(s) 28, 616
NlaIII CATG 7 cut(s) 139, 205, 541, 838, 926, 1286, 1312
NlaIV GGNNCC 5 cut(s) 25, 324, 325, 952, 953
NmuCI GTSAC 1 cut(s) 652
NsbI TGCGCA 1 cut(s) 839
NsiI ATGCAT 1 cut(s) 928
NspI RCATGY 4 cut(s) 205, 926, 1286, 1312
PaeI GCATGC 1 cut(s) 1312
PaqCI CACCTGC 1 cut(s) 877
PciI ACATGT 1 cut(s) 1282
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PctI GAATGC 1 cut(s) 301
PfeI GAWTC 2 cut(s) 1004, 1223
PflFI GACNNNGTC 1 cut(s) 335
PleI GAGTC 1 cut(s) 211
PluTI GGCGCC 1 cut(s) 27
PmaCI CACGTG 1 cut(s) 494
PmlI CACGTG 1 cut(s) 494
PpsI GAGTC 1 cut(s) 211
Ppu21I YACGTR 1 cut(s) 494
PpuMI RGGWCCY 2 cut(s) 951, 1300
PscI ACATGT 1 cut(s) 1282
Psp5II RGGWCCY 2 cut(s) 951, 1300
PspCI CACGTG 1 cut(s) 494
PspFI CCCAGC 1 cut(s) 6
PspN4I GGNNCC 5 cut(s) 25, 324, 325, 952, 953
PspOMI GGGCCC 1 cut(s) 323
PspPI GGNCC 8 cut(s) 4, 323, 324, 342, 792, 831, 951, 1300
PspPPI RGGWCCY 2 cut(s) 951, 1300
PstI CTGCAG 1 cut(s) 1327
PstNI CAGNNNCTG 2 cut(s) 52, 1303
PsyI GACNNNGTC 1 cut(s) 335
PvuII CAGCTG 1 cut(s) 1322
RsaI GTAC 2 cut(s) 143, 188
RsaNI GTAC 2 cut(s) 142, 187
RseI CAYNNNNRTG 1 cut(s) 1050
SacII CCGCGG 1 cut(s) 153
SaqAI TTAA 3 cut(s) 702, 1329, 1342
Sau3AI GATC 2 cut(s) 28, 616
Sau96I GGNCC 8 cut(s) 4, 323, 324, 342, 792, 831, 951, 1300
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 4 cut(s) 38, 327, 972, 1249
SfaNI GCATC 7 cut(s) 58, 81, 156, 386, 715, 935, 1111
SfcI CTRYAG 2 cut(s) 645, 1323
SfoI GGCGCC 1 cut(s) 25
Sfr303I CCGCGG 1 cut(s) 153
SgrBI CCGCGG 1 cut(s) 153
SinI GGWCC 3 cut(s) 342, 951, 1300
SmiMI CAYNNNNRTG 1 cut(s) 1050
SphI GCATGC 1 cut(s) 1312
SsiI CCGC 7 cut(s) 21, 150, 152, 191, 212, 287, 1317
SspDI GGCGCC 1 cut(s) 23
SspMI CTAG 3 cut(s) 609, 684, 722
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 1 cut(s) 946
TaaI ACNGT 5 cut(s) 524, 885, 965, 1156, 1174
TaiI ACGT 2 cut(s) 496, 742
TaqI TCGA 1 cut(s) 1177
TauI GCSGC 5 cut(s) 24, 152, 155, 215, 289
TfiI GAWTC 2 cut(s) 1004, 1223
Tru1I TTAA 3 cut(s) 702, 1329, 1342
Tru9I TTAA 3 cut(s) 702, 1329, 1342
TscAI CASTG 5 cut(s) 415, 589, 970, 1217, 1241
TseFI GTSAC 1 cut(s) 652
Tsp45I GTSAC 1 cut(s) 652
TspDTI ATGAA 5 cut(s) 353, 684, 789, 821, 1035
TspGWI ACGGA 3 cut(s) 408, 543, 1257
TspRI CASTG 5 cut(s) 415, 589, 970, 1217, 1241
Tth111I GACNNNGTC 1 cut(s) 335
VpaK11BI GGWCC 3 cut(s) 342, 951, 1300
XbaI TCTAGA 1 cut(s) 721
XceI RCATGY 4 cut(s) 205, 926, 1286, 1312
XspI CTAG 3 cut(s) 609, 684, 722
Zsp2I ATGCAT 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.