Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004565

Physical Location & Seq

Genomic Coordinates Forward (+)

78013942 .. 78014737

Gene Structure 796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0583000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTCATCAACACAAAATGCATCCCAAAGTTTAAGCTCCGAATCCGATTCCGATTCCGATTCCATTCATTCCAATTCAAATTCAAAAGCAATCGTTCCAAGACCAACACCAACTCCAACCGATGCTTTGAGGGTTCAGACAATTCCCAAAACATTCAAGGCCCAGAAGAAAAAGCGAGCTGTTGGGGGAAAGAGAAAGCGAGCTGCAGATGCAGAGGAAGAGGAAGGAGAAAAGTCTGAAAAACCAGCTGGAAGATCCTGGGTGTGGGAGCACTTCAAGAAGATCGACAAGCCTGTATTCGAGCTTGAATTCTTGAAACTTAAAGCATTTGGAGCAGTTGCAGCAGCTGGAGTTGGTGATGAAAGCATGTGGAGCAGCTGGACCCAGCTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

131

Amino Acids

14.41

Weight (kDa)

9.19

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49600 AT1G49600 AT1G49600 AT3G19130
fragaria_vesca	FvH4_2g06660 FvH4_2g06660 FvH4_2g06660
malus_domestica	MD05G1076000.v1.1 MD10G1090700.v1.1
prunus_persica	Prupe.8G119500_v2.0.a1 Prupe.8G119500_v2.0.a1
pyrus_communis	pycom05g06950 pycom10g07420
rosa_chinensis	RchiOBHm_Chr4g0407821 RchiOBHm_Chr6g0258701
rosa_laevigata	RLG00000014588
rosa_multiflora	Rmu_ssc0000014.1_g000001
rosa_roxburghii	Rroxscaffold_5G00352380 Rroxscaffold_7G00206030
rosa_rugosa	Rorug04G0081300 Rorug05G0582900 Rorug05G0583000 Rorug05G0583100
rosa_samantha	Rh4AG146600 Rh4BG144100 Rh4CG153100 Rh4DG140600 Rh6BG091100 Rh6DG082700
rosa_wichuraiana	Rw0G022700 Rw6G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	249
AcsI	RAATTY	2 cut(s)	79, 308
AfiI	CCNNNNNNNGG	1 cut(s)	264
AgsI	TTSAA	6 cut(s)	78, 84, 157, 277, 308, 316
AjnI	CCWGG	1 cut(s)	257
AluBI	AGCT	8 cut(s)	36, 179, 203, 248, 304, 347, 378, 388
AluI	AGCT	8 cut(s)	36, 179, 203, 248, 304, 347, 378, 388
Alw21I	GWGCWC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	249
AlwNI	CAGNNNCTG	1 cut(s)	347
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	5 cut(s)	203, 341, 344, 375, 388
ApoI	RAATTY	2 cut(s)	79, 308
AspS9I	GGNCC	2 cut(s)	160, 381
AsuHPI	GGTGA	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	5 cut(s)	190, 353, 356, 375, 387
BciT130I	CCWGG	1 cut(s)	259
BfmI	CTRYAG	2 cut(s)	204, 389
BisI	GCNGC	5 cut(s)	204, 342, 345, 376, 389
BlsI	GCNGC	5 cut(s)	205, 343, 346, 377, 390
Bme1390I	CCNGG	1 cut(s)	259
Bme18I	GGWCC	1 cut(s)	381
BmgT120I	GGNCC	2 cut(s)	160, 381
BmiI	GGNNCC	1 cut(s)	383
BmrFI	CCNGG	1 cut(s)	259
BmsI	GCATC	3 cut(s)	29, 112, 199
BpmI	CTGGAG	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	258
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bsc4I	CCNNNNNNNGG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	259
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	264
BseXI	GCAGC	5 cut(s)	190, 353, 356, 375, 387
BseYI	CCCAGC	1 cut(s)	384
BshFI	GGCC	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	273
BslI	CCNNNNNNNGG	1 cut(s)	264
BsnI	GGCC	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	2 cut(s)	254, 282
BspANI	GGCC	1 cut(s)	161
BspLI	GGNNCC	1 cut(s)	383
BspMAI	CTGCAG	2 cut(s)	208, 393
BspPI	GGATC	1 cut(s)	249
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	2 cut(s)	254, 282
Bst2UI	CCWGG	1 cut(s)	259
Bst6I	CTCTTC	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	177, 201
BstF5I	GGATG	1 cut(s)	20
BstKTI	GATC	2 cut(s)	257, 285
BstMBI	GATC	2 cut(s)	254, 282
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 332, 341, 372
BstNI	CCWGG	1 cut(s)	259
BstNSI	RCATGY	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	257
BstSFI	CTRYAG	2 cut(s)	204, 389
BstV1I	GCAGC	5 cut(s)	190, 353, 356, 375, 387
BstX2I	RGATCY	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	20
Cac8I	GCNNGC	2 cut(s)	177, 201
CaiI	CAGNNNCTG	1 cut(s)	347
Cfr13I	GGNCC	2 cut(s)	160, 381
CviAII	CATG	1 cut(s)	367
DpnI	GATC	2 cut(s)	256, 284
DpnII	GATC	2 cut(s)	254, 282
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	381
EcoRI	GAATTC	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	257
EcoT22I	ATGCAT	1 cut(s)	22
FaeI	CATG	1 cut(s)	370
FaiI	YATR	1 cut(s)	368
FatI	CATG	1 cut(s)	366
Fnu4HI	GCNGC	5 cut(s)	204, 342, 345, 376, 389
FokI	GGATG	1 cut(s)	7
Fsp4HI	GCNGC	5 cut(s)	204, 342, 345, 376, 389
GluI	GCNGC	5 cut(s)	204, 342, 345, 376, 389
GsaI	CCCAGC	1 cut(s)	388
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	1 cut(s)	161
Hin1II	CATG	1 cut(s)	370
HinfI	GANTC	4 cut(s)	41, 47, 53, 59
HphI	GGTGA	1 cut(s)	368
Hpy188I	TCNGA	6 cut(s)	40, 46, 52, 58, 138, 238
Hpy188III	TCNNGA	2 cut(s)	277, 313
HpyAV	CCTTC	1 cut(s)	218
HpyCH4V	TGCA	5 cut(s)	20, 206, 212, 341, 391
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 332, 341, 372
Hsp92II	CATG	1 cut(s)	370
Kzo9I	GATC	2 cut(s)	254, 282
LmnI	GCTCC	4 cut(s)	41, 268, 332, 372
LpnPI	CCDG	8 cut(s)	176, 234, 244, 258, 271, 306, 333, 364
Lsp1109I	GCAGC	5 cut(s)	190, 353, 356, 375, 387
LweI	GCATC	3 cut(s)	29, 112, 199
MalI	GATC	2 cut(s)	256, 284
MboI	GATC	2 cut(s)	254, 282
MboII	GAAGA	4 cut(s)	178, 230, 264, 292
MflI	RGATCY	1 cut(s)	254
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	4 cut(s)	73, 79, 141, 308
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	3 cut(s)	123, 208, 214
Mph1103I	ATGCAT	1 cut(s)	22
MseI	TTAA	2 cut(s)	32, 321
MspA1I	CMGCKG	4 cut(s)	248, 347, 378, 388
MspR9I	CCNGG	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	259
MwoI	GCNNNNNNNGC	4 cut(s)	209, 332, 341, 372
NdeII	GATC	2 cut(s)	254, 282
NlaIII	CATG	1 cut(s)	370
NlaIV	GGNNCC	1 cut(s)	383
NsiI	ATGCAT	1 cut(s)	22
NspI	RCATGY	1 cut(s)	370
PfeI	GAWTC	4 cut(s)	41, 47, 53, 59
PkrI	GCNGC	5 cut(s)	205, 343, 346, 377, 390
Psp6I	CCWGG	1 cut(s)	257
PspFI	CCCAGC	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	257
PspN4I	GGNNCC	1 cut(s)	383
PspPI	GGNCC	2 cut(s)	160, 381
PstI	CTGCAG	2 cut(s)	208, 393
PstNI	CAGNNNCTG	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	254
PvuII	CAGCTG	4 cut(s)	248, 347, 378, 388
SaqAI	TTAA	2 cut(s)	32, 321
SatI	GCNGC	5 cut(s)	204, 342, 345, 376, 389
Sau3AI	GATC	2 cut(s)	254, 282
Sau96I	GGNCC	2 cut(s)	160, 381
ScrFI	CCNGG	1 cut(s)	259
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	8 cut(s)	38, 181, 205, 250, 306, 349, 380, 390
SfaNI	GCATC	3 cut(s)	29, 112, 199
SfcI	CTRYAG	2 cut(s)	204, 389
SinI	GGWCC	1 cut(s)	381
Sse9I	AATT	4 cut(s)	73, 79, 141, 308
StyD4I	CCNGG	1 cut(s)	257
TaqI	TCGA	2 cut(s)	285, 300
TasI	AATT	4 cut(s)	73, 79, 141, 308
TfiI	GAWTC	4 cut(s)	41, 47, 53, 59
Tru1I	TTAA	2 cut(s)	32, 321
Tru9I	TTAA	2 cut(s)	32, 321
TseI	GCWGC	5 cut(s)	203, 341, 344, 375, 388
TspDTI	ATGAA	2 cut(s)	56, 375
VpaK11BI	GGWCC	1 cut(s)	381
XapI	RAATTY	2 cut(s)	79, 308
XceI	RCATGY	1 cut(s)	370
Zsp2I	ATGCAT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.