RchiOBHm_Chr6g0258701

polyadenylate-binding protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
14059845 .. 14066548
6704 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23195

Sequence Viewer

Length: 1356 bp
ATGGCCCAACAGAGCAACGGCGGCAGCGGCGATCTGAGCACGACTCAACAGGCCCAGCCCAACCAGCAACAGCAGCAACAGCAGCAGCAGCAGTGGATGCATCAGCACCAGCAGCAATGGATGGCGATGCAGTACCCGGCGGCGGCCATGGCGATGATGCAGCAGCAGATGATGGTGTACCCGCAGCATTACATGCCTACTTACGCCGCGCATCCGCATCACAATCCCTACCAGCAGGCTCAGGCCGCCGCCGCCGTGGCCTATCAGCAGCAGCCGCCGCTCAAGCAGCAGCAGCAGCAGCAGCAGTCTCAGTCGCAGCAGAAGATGGGGCCTACTGATGAGGTCAGGACCATCTGGGCTGGCGACCTGCACCATTGGATGGACGAGGCTTACCTTCATGGCTGCTTCGCCTACACCGGCCAGGTCTCTTCAGTAAAGGTTATACGCAATAAGCAAACAGGTCAGACAGAAGGGTATGGTTTTGTTGAGTTCTATTCACGTGAAGCAGCTGAGGAAGTTCTGCAGACCTATAATGGTACTCCTATGCCAAATACAGAGCAGCCTTTTCGTCTGAACTGGGCAACCTTTAGTGCGGGTGACAGACGAGCAGATACTAGTTCTGATCTATCTATCTTTGTAGGAGATTTAGCTACAGATGTGACTGACACTATGTTGCAAGAAACCTTTGCTAGTAGATATACATCTGTTAAGGGGGCAAAAGTTGTTCAAGATGCAAATACCGGTCGTTCAAAGGGTTATGGTTTTGTTAGGTTTGGGGATGAAAATGAGAGGACAAAGGCCATTGTGGAAATGAATGGTGCGTATTGTTCGAGCAGGCCCATGCGTATAGGTGTTGCAACGCCCAAAAAATCATCTGGATATCAACAACAGTACTCTTCACAAGCATTGGTATTGGCTGGAGGTGGTGGACATGCAAATGGTGCCATTGCCCAAGGTTCTCAGTCTGATGGCGAGCCCAATAACACAACTATATTTGTTGGAGGGCTTGATTCTGATGTCAATGAGGAAGACCTCAGGCAGCCATTTTCTCAATTTGGTGAAGTTGTCTCTGTGAAAATACCGGTTGGAAAAGCATGCGGTTTTGTTCAGTTCGCTAATAGGAAGGATGCTGAGAATGCAATGAATATGCTGAATGCAACTGTTATTGGAAAGCAAACAGTTCGTCTGTCTTGGGGTCGCAGTCAAGGCAACAAGCAGTGGAGATCGGACTCAAGTAACCAGTGGAACAATGGAGGACATTATGGAGGGCAGGGGTATGGTGGGTACGCAAATGCTGCGCCACAGAATCCAGATCTGAGTATGCATGCTGCAGCTGCGATTAATGGGTCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

451

Amino Acids

49.58

Weight (kDa)

6.31

Isoelectric Point (pI)

55.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 121 - 185 3.2e-11 RNA recognition motif
RRM_1 PF00076 211 - 281 4.8e-16 RNA recognition motif
RRM_1 PF00076 331 - 394 1.3e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 375
AccB1I GGYRCC 1 cut(s) 941
AccB7I CCANNNNNTGG 1 cut(s) 379
AccBSI CCGCTC 1 cut(s) 280
AccII CGCG 1 cut(s) 209
AcoI YGGCCR 2 cut(s) 144, 418
AcuI CTGAAG 1 cut(s) 414
AcvI CACGTG 1 cut(s) 500
AfaI GTAC 5 cut(s) 134, 179, 538, 893, 1286
AfiI CCNNNNNNNGG 2 cut(s) 142, 379
AgeI ACCGGT 2 cut(s) 740, 1081
AgsI TTSAA 2 cut(s) 728, 750
AhlI ACTAGT 1 cut(s) 614
AjnI CCWGG 1 cut(s) 420
AluBI AGCT 3 cut(s) 509, 650, 1334
AluI AGCT 3 cut(s) 509, 650, 1334
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 3 cut(s) 312, 430, 1072
AoxI GGCC 9 cut(s) 3, 51, 144, 243, 258, 329, 418, 798, 836
ArsI GACNNNNNNTTYG 2 cut(s) 1168, 1200
AseI ATTAAT 1 cut(s) 1341
AsiGI ACCGGT 2 cut(s) 740, 1081
AspLEI GCGC 2 cut(s) 211, 1300
AspS9I GGNCC 5 cut(s) 4, 52, 329, 348, 837
AsuC2I CCSGG 1 cut(s) 137
AsuHPI GGTGA 2 cut(s) 608, 1070
AvaII GGWCC 1 cut(s) 348
AxyI CCTNAGG 1 cut(s) 1034
BanI GGYRCC 1 cut(s) 941
BanII GRGCYC 1 cut(s) 978
BbrPI CACGTG 1 cut(s) 500
BbsI GAAGAC 2 cut(s) 1035, 1341
Bbv12I GWGCWC 1 cut(s) 41
BbvCI CCTCAGC 1 cut(s) 510
BccI CCATC 6 cut(s) 115, 166, 319, 359, 373, 962
BceAI ACGGC 2 cut(s) 34, 239
BcgI CGANNNNNNTGC 4 cut(s) 548, 582, 1163, 1197
BciT130I CCWGG 1 cut(s) 422
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 3 cut(s) 312, 430, 1072
BcuI ACTAGT 1 cut(s) 614
BfaI CTAG 2 cut(s) 615, 690
BfmI CTRYAG 3 cut(s) 521, 651, 1329
BfuAI ACCTGC 1 cut(s) 375
BglI GCCNNNNNGGC 1 cut(s) 257
BglII AGATCT 1 cut(s) 1312
BmcAI AGTACT 1 cut(s) 893
Bme1390I CCNGG 2 cut(s) 137, 422
Bme18I GGWCC 1 cut(s) 348
BmgT120I GGNCC 5 cut(s) 4, 52, 329, 348, 837
BmiI GGNNCC 2 cut(s) 330, 943
BmrFI CCNGG 2 cut(s) 137, 422
BmrI ACTGGG 1 cut(s) 586
BmsI GCATC 8 cut(s) 87, 109, 117, 147, 220, 226, 721, 1117
BmuI ACTGGG 1 cut(s) 586
BpiI GAAGAC 2 cut(s) 1035, 1341
BplI GAGNNNNNCTC 2 cut(s) 28, 60
BpmI CTGGAG 1 cut(s) 939
Bpu10I CCTNAGC 2 cut(s) 240, 510
BpuEI CTTGAG 2 cut(s) 266, 1216
BpuMI CCSGG 1 cut(s) 137
BsaAI YACGTR 1 cut(s) 500
BsaBI GATNNNNATC 1 cut(s) 700
BsaI GGTCTC 1 cut(s) 430
BsaJI CCNNGG 3 cut(s) 147, 255, 952
BsaWI WCCGGW 2 cut(s) 740, 1081
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 379
Bse118I RCCGGY 3 cut(s) 416, 740, 1081
Bse1I ACTGG 2 cut(s) 581, 1240
Bse21I CCTNAGG 1 cut(s) 1034
Bse3DI GCAATG 3 cut(s) 122, 945, 1146
Bse8I GATNNNNATC 1 cut(s) 700
BseBI CCWGG 1 cut(s) 422
BseDI CCNNGG 3 cut(s) 147, 255, 952
BseGI GGATG 6 cut(s) 102, 126, 211, 384, 784, 1132
BseJI GATNNNNATC 1 cut(s) 700
BseLI CCNNNNNNNGG 2 cut(s) 142, 379
BseMI GCAATG 3 cut(s) 122, 945, 1146
BseMII CTCAG 8 cut(s) 26, 254, 323, 501, 974, 1048, 1122, 1307
BseNI ACTGG 2 cut(s) 581, 1240
BseYI CCCAGC 1 cut(s) 54
BsgI GTGCAG 1 cut(s) 353
Bsh1236I CGCG 1 cut(s) 209
Bsh1285I CGRYCG 1 cut(s) 745
BshFI GGCC 9 cut(s) 5, 53, 146, 245, 260, 331, 420, 800, 838
BshNI GGYRCC 1 cut(s) 941
BshTI ACCGGT 2 cut(s) 740, 1081
BsiEI CGRYCG 1 cut(s) 745
BsiHKAI GWGCWC 1 cut(s) 41
BsiSI CCGG 4 cut(s) 137, 417, 741, 1082
BslI CCNNNNNNNGG 2 cut(s) 142, 379
BsmAI GTCTC 3 cut(s) 312, 430, 1072
BsmI GAATGC 2 cut(s) 1141, 1159
BsnI GGCC 9 cut(s) 5, 53, 146, 245, 260, 331, 420, 800, 838
Bso31I GGTCTC 1 cut(s) 430
Bsp1286I GDGCHC 2 cut(s) 41, 978
Bsp143I GATC 4 cut(s) 31, 622, 1223, 1312
Bsp19I CCATGG 1 cut(s) 147
BspANI GGCC 9 cut(s) 5, 53, 146, 245, 260, 331, 420, 800, 838
BspCNI CTCAG 8 cut(s) 27, 253, 322, 502, 973, 1047, 1123, 1308
BspFNI CGCG 1 cut(s) 209
BspLI GGNNCC 2 cut(s) 330, 943
BspMAI CTGCAG 2 cut(s) 525, 1333
BspMI ACCTGC 1 cut(s) 375
BspT107I GGYRCC 1 cut(s) 941
BspTNI GGTCTC 1 cut(s) 430
BsrBI CCGCTC 1 cut(s) 280
BsrDI GCAATG 3 cut(s) 122, 945, 1146
BsrFI RCCGGY 3 cut(s) 416, 740, 1081
BsrI ACTGG 2 cut(s) 581, 1240
BssAI RCCGGY 3 cut(s) 416, 740, 1081
BssECI CCNNGG 3 cut(s) 147, 255, 952
BssMI GATC 4 cut(s) 31, 622, 1223, 1312
BssT1I CCWWGG 2 cut(s) 147, 952
Bst2UI CCWGG 1 cut(s) 422
Bst4CI ACNGT 3 cut(s) 891, 1162, 1180
Bst6I CTCTTC 2 cut(s) 433, 901
BstAPI GCANNNNNTGC 4 cut(s) 97, 193, 941, 1295
BstBAI YACGTR 1 cut(s) 500
BstC8I GCNNGC 6 cut(s) 237, 361, 836, 974, 1096, 1326
BstDEI CTNAG 8 cut(s) 35, 240, 309, 510, 960, 1034, 1131, 1316
BstDSI CCRYGG 2 cut(s) 147, 255
BstF5I GGATG 6 cut(s) 102, 126, 211, 384, 784, 1132
BstFNI CGCG 1 cut(s) 209
BstHHI GCGC 2 cut(s) 211, 1300
BstKTI GATC 4 cut(s) 34, 625, 1226, 1315
BstMAI GTCTC 3 cut(s) 312, 430, 1072
BstMBI GATC 4 cut(s) 31, 622, 1223, 1312
BstMCI CGRYCG 1 cut(s) 745
BstNI CCWGG 1 cut(s) 422
BstNSI RCATGY 4 cut(s) 196, 935, 1098, 1328
BstSCI CCNGG 2 cut(s) 135, 420
BstSFI CTRYAG 3 cut(s) 521, 651, 1329
BstUI CGCG 1 cut(s) 209
BstV2I GAAGAC 2 cut(s) 1035, 1341
BstX2I RGATCY 1 cut(s) 1312
BstYI RGATCY 1 cut(s) 1312
Bsu36I CCTNAGG 1 cut(s) 1034
BsuRI GGCC 9 cut(s) 5, 53, 146, 245, 260, 331, 420, 800, 838
BtgI CCRYGG 2 cut(s) 147, 255
BtgZI GCGATG 2 cut(s) 140, 167
BtsCI GGATG 6 cut(s) 102, 126, 211, 384, 784, 1132
BtsI GCAGTG 2 cut(s) 98, 1223
BtsIMutI CAGTG 3 cut(s) 98, 1223, 1247
BveI ACCTGC 1 cut(s) 375
Cac8I GCNNGC 6 cut(s) 237, 361, 836, 974, 1096, 1326
CfoI GCGC 2 cut(s) 211, 1300
Cfr10I RCCGGY 3 cut(s) 416, 740, 1081
Cfr13I GGNCC 5 cut(s) 4, 52, 329, 348, 837
Csp6I GTAC 5 cut(s) 133, 178, 537, 892, 1285
CspAI ACCGGT 2 cut(s) 740, 1081
CviAII CATG 7 cut(s) 148, 193, 398, 841, 932, 1095, 1325
CviQI GTAC 5 cut(s) 133, 178, 537, 892, 1285
DdeI CTNAG 8 cut(s) 35, 240, 309, 510, 960, 1034, 1131, 1316
DpnI GATC 4 cut(s) 33, 624, 1225, 1314
DpnII GATC 4 cut(s) 31, 622, 1223, 1312
EaeI YGGCCR 2 cut(s) 144, 418
Eam1104I CTCTTC 2 cut(s) 433, 901
EarI CTCTTC 2 cut(s) 433, 901
Eco130I CCWWGG 2 cut(s) 147, 952
Eco24I GRGCYC 1 cut(s) 978
Eco31I GGTCTC 1 cut(s) 430
Eco32I GATATC 1 cut(s) 881
Eco47I GGWCC 1 cut(s) 348
Eco57I CTGAAG 1 cut(s) 414
Eco72I CACGTG 1 cut(s) 500
Eco81I CCTNAGG 1 cut(s) 1034
EcoO109I RGGNCCY 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 420
EcoRV GATATC 1 cut(s) 881
EcoT14I CCWWGG 2 cut(s) 147, 952
EcoT22I ATGCAT 2 cut(s) 102, 1326
EcoT38I GRGCYC 1 cut(s) 978
ErhI CCWWGG 2 cut(s) 147, 952
FaeI CATG 7 cut(s) 151, 196, 401, 844, 935, 1098, 1328
FatI CATG 7 cut(s) 147, 192, 397, 840, 931, 1094, 1324
FauI CCCGC 2 cut(s) 189, 586
FokI GGATG 6 cut(s) 109, 133, 198, 391, 791, 1139
FriOI GRGCYC 1 cut(s) 978
FspBI CTAG 2 cut(s) 615, 690
GlaI GCGC 2 cut(s) 210, 1299
GsaI CCCAGC 1 cut(s) 58
GsuI CTGGAG 1 cut(s) 939
HaeIII GGCC 9 cut(s) 5, 53, 146, 245, 260, 331, 420, 800, 838
HapII CCGG 4 cut(s) 137, 417, 741, 1082
HhaI GCGC 2 cut(s) 211, 1300
Hin1II CATG 7 cut(s) 151, 196, 401, 844, 935, 1098, 1328
Hin6I GCGC 2 cut(s) 209, 1298
HinP1I GCGC 2 cut(s) 209, 1298
HinfI GANTC 4 cut(s) 43, 1010, 1229, 1306
HpaII CCGG 4 cut(s) 137, 417, 741, 1082
HphI GGTGA 2 cut(s) 608, 1070
Hpy166II GTNNAC 2 cut(s) 178, 929
Hpy188I TCNGA 8 cut(s) 36, 465, 573, 622, 967, 1015, 1228, 1317
Hpy188III TCNNGA 4 cut(s) 346, 728, 876, 1310
Hpy8I GTNNAC 2 cut(s) 178, 929
HpyAV CCTTC 3 cut(s) 404, 464, 1117
HpyCH4III ACNGT 3 cut(s) 891, 1162, 1180
HpyCH4IV ACGT 1 cut(s) 499
HpyF3I CTNAG 8 cut(s) 35, 240, 309, 510, 960, 1034, 1131, 1316
HpySE526I ACGT 1 cut(s) 499
Hsp92II CATG 7 cut(s) 151, 196, 401, 844, 935, 1098, 1328
HspAI GCGC 2 cut(s) 209, 1298
Kzo9I GATC 4 cut(s) 31, 622, 1223, 1312
LweI GCATC 8 cut(s) 87, 109, 117, 147, 220, 226, 721, 1117
MaeI CTAG 2 cut(s) 615, 690
MaeII ACGT 1 cut(s) 499
MaeIII GTNAC 3 cut(s) 596, 658, 1235
MalI GATC 4 cut(s) 33, 624, 1225, 1314
MbiI CCGCTC 1 cut(s) 280
MboI GATC 4 cut(s) 31, 622, 1223, 1312
MboII GAAGA 5 cut(s) 334, 420, 888, 1040, 1341
MflI RGATCY 1 cut(s) 1312
MhlI GDGCHC 2 cut(s) 41, 978
MluCI AATT 1 cut(s) 1052
MlyI GAGTC 2 cut(s) 37, 1223
MmeI TCCRAC 2 cut(s) 979, 1066
Mph1103I ATGCAT 2 cut(s) 102, 1326
MseI TTAA 3 cut(s) 708, 1341, 1354
MslI CAYNNNNRTG 2 cut(s) 152, 936
MspA1I CMGCKG 3 cut(s) 27, 509, 1334
MspI CCGG 4 cut(s) 137, 417, 741, 1082
MspR9I CCNGG 2 cut(s) 137, 422
Mva1269I GAATGC 2 cut(s) 1141, 1159
MvaI CCWGG 1 cut(s) 422
MvnI CGCG 1 cut(s) 209
NciI CCSGG 1 cut(s) 137
NcoI CCATGG 1 cut(s) 147
NdeII GATC 4 cut(s) 31, 622, 1223, 1312
NlaIII CATG 7 cut(s) 151, 196, 401, 844, 935, 1098, 1328
NlaIV GGNNCC 2 cut(s) 330, 943
NmuCI GTSAC 2 cut(s) 596, 658
NsiI ATGCAT 2 cut(s) 102, 1326
NspI RCATGY 4 cut(s) 196, 935, 1098, 1328
PaeI GCATGC 2 cut(s) 1098, 1328
PctI GAATGC 2 cut(s) 1141, 1159
PfeI GAWTC 2 cut(s) 1010, 1306
PflMI CCANNNNNTGG 1 cut(s) 379
PinAI ACCGGT 2 cut(s) 740, 1081
PleI GAGTC 2 cut(s) 37, 1223
PmaCI CACGTG 1 cut(s) 500
PmlI CACGTG 1 cut(s) 500
PpsI GAGTC 2 cut(s) 37, 1223
Ppu21I YACGTR 1 cut(s) 500
PshBI ATTAAT 1 cut(s) 1341
Psp6I CCWGG 1 cut(s) 420
PspCI CACGTG 1 cut(s) 500
PspFI CCCAGC 1 cut(s) 54
PspGI CCWGG 1 cut(s) 420
PspN4I GGNNCC 2 cut(s) 330, 943
PspPI GGNCC 5 cut(s) 4, 52, 329, 348, 837
PstI CTGCAG 2 cut(s) 525, 1333
PsuI RGATCY 1 cut(s) 1312
PvuII CAGCTG 2 cut(s) 509, 1334
RsaI GTAC 5 cut(s) 134, 179, 538, 893, 1286
RsaNI GTAC 5 cut(s) 133, 178, 537, 892, 1285
RseI CAYNNNNRTG 2 cut(s) 152, 936
SaqAI TTAA 3 cut(s) 708, 1341, 1354
Sau3AI GATC 4 cut(s) 31, 622, 1223, 1312
Sau96I GGNCC 5 cut(s) 4, 52, 329, 348, 837
ScaI AGTACT 1 cut(s) 893
SchI GAGTC 2 cut(s) 37, 1223
ScrFI CCNGG 2 cut(s) 137, 422
SduI GDGCHC 2 cut(s) 41, 978
SfaNI GCATC 8 cut(s) 87, 109, 117, 147, 220, 226, 721, 1117
SfcI CTRYAG 3 cut(s) 521, 651, 1329
SinI GGWCC 1 cut(s) 348
SmiMI CAYNNNNRTG 2 cut(s) 152, 936
SmlI CTYRAG 2 cut(s) 281, 1231
SmoI CTYRAG 2 cut(s) 281, 1231
SpeI ACTAGT 1 cut(s) 614
SphI GCATGC 2 cut(s) 1098, 1328
Sse9I AATT 1 cut(s) 1052
SspMI CTAG 2 cut(s) 615, 690
StyD4I CCNGG 2 cut(s) 135, 420
StyI CCWWGG 2 cut(s) 147, 952
TaaI ACNGT 3 cut(s) 891, 1162, 1180
TaiI ACGT 1 cut(s) 502
TaqI TCGA 1 cut(s) 830
TasI AATT 1 cut(s) 1052
TatI WGTACW 1 cut(s) 891
TfiI GAWTC 2 cut(s) 1010, 1306
Tru1I TTAA 3 cut(s) 708, 1341, 1354
Tru9I TTAA 3 cut(s) 708, 1341, 1354
TscAI CASTG 3 cut(s) 98, 1223, 1247
TseFI GTSAC 2 cut(s) 596, 658
Tsp45I GTSAC 2 cut(s) 596, 658
TspDTI ATGAA 4 cut(s) 386, 795, 827, 1157
TspRI CASTG 3 cut(s) 98, 1223, 1247
Van91I CCANNNNNTGG 1 cut(s) 379
VpaK11BI GGWCC 1 cut(s) 348
VspI ATTAAT 1 cut(s) 1341
XceI RCATGY 4 cut(s) 196, 935, 1098, 1328
XcmI CCANNNNNNNNNTGG 1 cut(s) 1247
XspI CTAG 2 cut(s) 615, 690
ZrmI AGTACT 1 cut(s) 893
Zsp2I ATGCAT 2 cut(s) 102, 1326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.